Current approaches to predicting molecular organic crystal structures
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[1] G. Pawley,et al. On the lattice dynamics of solid nitrogen , 1974 .
[2] A. Stone,et al. Electrostatic predictions of shapes and properties of Van der Waals molecules , 1986 .
[4] A. Dzyabchenko. Theoretical structures of crystalline benzene: The search for a global minimum of the lattice energy in four space groups , 1984 .
[5] William Jones,et al. Beyond the isotropic atom model in crystal structure prediction of rigid molecules: atomic multipoles versus point charges , 2005 .
[6] F. Leusen. Crystal Structure Prediction of Diastereomeric Salts: A Step toward Rationalization of Racemate Resolution , 2003 .
[7] James A. Chisholm,et al. COMPACK: a program for identifying crystal structure similarity using distances , 2005 .
[8] Frank J. J. Leusen,et al. A study of different approaches to the electrostatic interaction in force field methods for organic crystals , 2003 .
[9] Kroon,et al. Structure predictions allowing more than one molecule in the asymmetric unit , 2000, Acta crystallographica. Section B, Structural science.
[10] B. Kariuki,et al. Characterization of complicated new polymorphs of chlorothalonil by X-ray diffraction and computer crystal structure prediction. , 2004, Journal of the American Chemical Society.
[11] W. Motherwell. Crystal Structure Prediction and the Cambridge Structural Database , 2001 .
[12] William Jones,et al. An Assessment of Lattice Energy Minimization for the Prediction of Molecular Organic Crystal Structures , 2004 .
[13] I. Sobol. On the distribution of points in a cube and the approximate evaluation of integrals , 1967 .
[14] Jan Kroon,et al. Upack program package for crystal structure prediction: Force fields and crystal structure generation for small carbohydrate molecules , 1999, J. Comput. Chem..
[15] J. Dunitz. Are crystal structures predictable? , 2003, Chemical communications.
[16] Sarah L. Price,et al. A first principles prediction of the crystal structure of C6Br2ClFH2 , 2008 .
[17] J. Chisholm,et al. An ab initio study of observed and hypothetical polymorphs of glycine , 2005 .
[18] T. C. Lewis,et al. Which organic crystal structures are predictable by lattice energy minimisation?Electronic supplementary information (ESI) available: downloadable version of Table 2. See http://www.rsc.org/suppdata/ce/b1/b108135g/ , 2001 .
[19] E. Venuti,et al. Pressure-induced phase transitions in 9,10-anthracene derivatives: anthraquinone , 1995 .
[20] A. Gavezzotti. A Molecular Dynamics Test of the Different Stability of Crystal Polymorphs under Thermal Strain , 2000 .
[21] Donald E. Williams,et al. Molecular packing analysis: prediction of experimental crystal structures of benzene starting from unreasonable initial structures , 1994 .
[22] W. D. Sam Motherwell,et al. An Experiment in Crystal Structure Prediction by Popular Vote , 2006 .
[23] Jaroslaw Pillardy,et al. Conformation-Family Monte Carlo (CFMC): An Efficient Computational Method for Identifying the Low-Energy States of a Macromolecule , 2000 .
[24] J. Bauer,et al. Ritonavir: An Extraordinary Example of Conformational Polymorphism , 2001, Pharmaceutical Research.
[25] A. Dzyabchenko,et al. Theoretical structure of crystalline benzene. III. Hydrostatic pressure effect , 1986 .
[26] Michele Parrinello,et al. The thermal stability of lattice-energy minima of 5-fluorouracil: metadynamics as an aid to polymorph prediction. , 2008, The journal of physical chemistry. B.
[27] W. Mooij,et al. Multipoles versus charges in the 1999 crystal structure prediction test , 2001 .
[28] J. Novoa,et al. A First-Principles Computation of the Low-Energy Polymorphic Forms of the Acetic Acid Crystal. A Test of the Atom−Atom Force Field Predictions , 2001 .
[29] P. Karamertzanis,et al. Is the Induction Energy Important for Modeling Organic Crystals? , 2008, Journal of chemical theory and computation.
[30] H. Scheraga,et al. Derivation of a New Force Field for Crystal-Structure Prediction Using Global Optimization: Nonbonded Potential Parameters for Hydrocarbons and Alcohols , 2003 .
[31] Adam Liwo,et al. Diffusion Equation and Distance Scaling Methods of Global Optimization: Applications to Crystal Structure Prediction , 1998 .
[32] Thomas Lengauer,et al. Prediction of crystal structures of organic molecules , 1999 .
[33] D. Sorescu,et al. Assessing a Generalized CHNO Intermolecular Potential through ab Initio Crystal Structure Prediction , 2004 .
[34] T. C. Lewis,et al. A third blind test of crystal structure prediction. , 2005, Acta crystallographica. Section B, Structural science.
[35] G. Day,et al. Predicting stoichiometry and structure of solvates. , 2010, Chemical communications.
[36] D. E. Williams,et al. Ab initio molecular packing analysis , 1996 .
[37] G. Desiraju,et al. Crystal structure prediction of aminols: advantages of a supramolecular synthon approach with experimental structures. , 2005, Journal of the American Chemical Society.
[38] G. B. Suffritti,et al. Lattice dynamics in crystals of ‘rigid’ hydrocarbons , 1973 .
[39] A. Laio,et al. Simulation of structural phase transitions by metadynamics , 2004, cond-mat/0411559.
[40] G. Scuseria,et al. An ab Initio Study of Solid Nitromethane, HMX, RDX, and CL20: Successes and Failures of DFT , 2004 .
[41] S. Price. The computational prediction of pharmaceutical crystal structures and polymorphism. , 2004, Advanced drug delivery reviews.
[42] A. Gavezzotti,et al. X-ray diffraction and molecular simulation study of the crystalline and liquid states of succinic anhydride. , 2002, Chemistry.
[43] Bouke P. van Eijck,et al. Ab initio crystal structure predictions for flexible hydrogen-bonded molecules. Part III. Effect of lattice vibrations , 2001, J. Comput. Chem..
[44] Sarah L. Price,et al. Toward More Accurate Model Intermolecular Potentials for Organic Molecules , 2007 .
[45] M. Parrinello,et al. Exploring polymorphism: the case of benzene. , 2005, Angewandte Chemie.
[46] E. Venuti,et al. Inherent structures of crystalline pentacene , 2003 .
[47] John Maddox,et al. Waves caused by extreme dilution , 1988, Nature.
[48] G. Day,et al. Realizing Predicted Crystal Structures at Extreme Conditions: The Low-Temperature and High-Pressure Crystal Structures of 2-Chlorophenol and 4-Fluorophenol , 2005 .
[49] Valery A. Davydov,et al. A Theoretical Study of the Pressure-Induced Dimerization of C60 Fullerene , 1999 .
[50] A. Gavezzotti,et al. Molecular Shape and Crystal Packing: a Study of C12H12 Isomers, Real and Imaginary , 2000 .
[51] David J. Willock,et al. The relaxation of molecular crystal structures using a distributed multipole electrostatic model , 1995, J. Comput. Chem..
[52] A. Gavezzotti,et al. Generation of possible crystal structures from molecular structure for low-polarity organic compounds , 1991 .
[53] G. Day,et al. Sensitivity of morphology prediction to the force field: Paracetamol as an example , 2004 .
[54] A. Gavezzotti,et al. Calculation of Intermolecular Interaction Energies by Direct Numerical Integration over Electron Densities. 2. An Improved Polarization Model and the Evaluation of Dispersion and Repulsion Energies , 2003 .
[55] A. V. Dzyabchenko. Method of crystal-structure similarity searching , 1994 .
[56] P. Bennema,et al. The attachment energy as a habit controlling factor: I. Theoretical considerations , 1980 .
[57] Constantinos C. Pantelides,et al. Optimal Site Charge Models for Molecular Electrostatic Potentials , 2004 .
[58] A I Kitaigorodskii,et al. Organic chemical crystallography , 1961 .
[59] C. Faerman,et al. A revision of van der Waals atomic radii for molecular crystals: N, O, F, S, Cl, Se, Br and I bonded to carbon , 1985 .
[60] A. Spek,et al. Hypothetical Crystal Structures of Benzene at 0 and 30 kbar , 1998 .
[61] V. Bazterra,et al. Modified genetic algorithm to model crystal structures. II. Determination of a polymorphic structure of benzene using enthalpy minimization , 2002 .
[62] R. Gdanitz,et al. Ab Initio prediction of possible crystal structures for general organic molecules , 1992 .
[63] G. Day. Crystal structure prediction , 2012 .
[64] Anthony J. Stone,et al. Distributed multipole analysis, or how to describe a molecular charge distribution , 1981 .
[65] G. Pawley. Analytic formulation of molecular lattice dynamics based on pair potential functions , 1972 .
[66] Sarah L Price,et al. A nonempirical anisotropic atom-atom model potential for chlorobenzene crystals. , 2003, Journal of the American Chemical Society.
[67] G. Day,et al. Pseudoracemic amino acid complexes: blind predictions for flexible two-component crystals. , 2010, Physical Chemistry, Chemical Physics - PCCP.
[68] T. Steiner. Frequency of Z' values in organic and organometallic crystal structures. , 2000, Acta crystallographica. Section B, Structural science.
[69] P Verwer,et al. A test of crystal structure prediction of small organic molecules. , 2000, Acta crystallographica. Section B, Structural science.
[70] Stefan Grimme,et al. Semiempirical GGA‐type density functional constructed with a long‐range dispersion correction , 2006, J. Comput. Chem..
[71] S. J. Cyvin,et al. Structure and barrier of internal rotation of biphenyl derivatives in the gaseous state: Part 1. The molecular structure and normal coordinate analysis of normal biphenyl and pedeuterated biphenyl , 1985 .
[72] A. Gavezzotti,et al. Ten years of experience in polymorph prediction: what next? , 2002 .
[73] Constantinos C. Pantelides,et al. Ab initio crystal structure prediction—I. Rigid molecules , 2005, J. Comput. Chem..
[74] William Jones,et al. Prediction and observation of isostructurality induced by solvent incorporation in multicomponent crystals. , 2006, Journal of the American Chemical Society.
[75] Graeme M. Day,et al. Elastic Constant Calculations for Molecular Organic Crystals , 2001 .
[76] K. Brose. Lattice Dynamics of Molecular Crystals. , 1988 .
[77] P. Bennema,et al. Crystal growth and morphology: New developments in an integrated Hartman-Perdok-connected net-roughening transition theory, supported by computer simulations , 2004 .
[78] Ulli Englert,et al. Prediction of crystal structures , 1996 .
[79] W. G. Perdok,et al. On the relations between structure and morphology of crystals. I , 1955 .
[80] M. Sanquer,et al. Structural phase transition in polyphenyls. VIII. The modulated structure of phase III of biphenyl (T∝ 20 K) from neutron diffraction data , 1983 .
[81] Victor E Bazterra,et al. A Distributed Computing Method for Crystal Structure Prediction of Flexible Molecules: An Application to N-(2-Dimethyl-4,5-dinitrophenyl) Acetamide. , 2007, Journal of chemical theory and computation.
[82] F. Leusen,et al. A major advance in crystal structure prediction. , 2008, Angewandte Chemie.
[83] N. Metropolis,et al. Equation of State Calculations by Fast Computing Machines , 1953, Resonance.
[84] P. Karamertzanis,et al. A computationally inspired investigation of the solid forms of (R)-1-phenylethylammonium-(S)-2-phenylbutyrate. , 2009, Chirality.
[85] Jan Kroon,et al. TRANSFERABLE AB INITIO INTERMOLECULAR POTENTIALS. 2. VALIDATION AND APPLICATION TO CRYSTAL STRUCTURE PREDICTION , 1999 .
[86] A. Brillante,et al. LATTICE DYNAMICS OF HALOGENATED ANTHRACENE DERIVATIVES UNDER PRESSURE , 1994 .
[87] S. Chemburkar,et al. Dealing with the Impact of Ritonavir Polymorphs on the Late Stages of Bulk Drug Process Development , 2000 .
[88] Thomas Lengauer,et al. A Discrete Algorithm for Crystal Structure Prediction of Organic Molecules , 1997 .
[89] G. Day,et al. A strategy for predicting the crystal structures of flexible molecules: the polymorphism of phenobarbital. , 2007, Physical chemistry chemical physics : PCCP.
[90] Aleksandr Isaakovich Kitaĭgorodskiĭ,et al. Molecular Crystals and Molecules , 1973 .
[91] E. Venuti,et al. Pressure and temperature effects in lattice dynamics: the case of naphthalene , 1995 .
[92] Gautam R. Desiraju,et al. The Supramolecular Synthon Approach to Crystal Structure Prediction , 2002 .
[93] M. Colapietro,et al. Molecular structure of p-diaminobenzene in the gaseous phase and in the crystal , 1987 .
[94] Sarah L Price,et al. Toward the Prediction of Organic Hydrate Crystal Structures. , 2007, Journal of chemical theory and computation.
[95] A. Pertsin,et al. The Atom-Atom Potential Method: Applications to Organic Molecular Solids , 1987 .
[96] G. Day,et al. Dynamics in crystals of rigid organic molecules: contrasting the phonon frequencies calculated by molecular dynamics with harmonic lattice dynamics for imidazole and 5-azauracil , 2004 .
[97] E. Venuti,et al. Quasi harmonic lattice dynamics: the phase diagram of benzene , 1996 .
[98] J. Sherwood,et al. Explanation for the Supersaturation-Dependent Morphology of Monoclinic Paracetamol , 2002 .
[99] Sarah L Price,et al. Modeling the interplay of inter- and intramolecular hydrogen bonding in conformational polymorphs. , 2008, The Journal of chemical physics.
[100] A. Warshel,et al. Examination of intramolecular potential surfaces of flexible conjugated molecules by calculation of crystal structures. equilibrium geometries of chalc , 1974 .
[101] Tejender S. Thakur,et al. Significant progress in predicting the crystal structures of small organic molecules--a report on the fourth blind test. , 2009, Acta crystallographica. Section B, Structural science.
[102] James R. Holden,et al. Prediction of possible crystal structures for C‐, H‐, N‐, O‐, and F‐containing organic compounds , 1993, J. Comput. Chem..
[103] M. Alderton,et al. Distributed multipole analysis Methods and applications , 1985 .
[104] G. Day,et al. Crystal packing predictions of the alpha-amino acids: methods assessment and structural observations , 2010 .
[105] Sarah L. Price,et al. Quantifying intermolecular interactions and their use in computational crystal structure prediction , 2004 .
[106] Julian D. Gale,et al. Calculation of Attachment Energies and Relative Volume Growth Rates As an Aid to Polymorph Prediction , 2005 .
[107] Jan Kroon,et al. Crystal structure predictions for acetic acid , 1998, J. Comput. Chem..
[108] Sarah L. Price,et al. Role of electrostatic interactions in determining the crystal structures of polar organic molecules. A distributed multipole study , 1996 .
[109] F. Leusen,et al. The ab initio prediction of yet unknown molecular crystal structures by solving the crystal packing problem , 1994 .
[110] D. E. Williams,et al. Nonbonded potentials for azahydrocarbons: the importance of the Coulombic interaction , 1984 .
[111] Bouke P. van Eijck,et al. Transferable ab Initio Intermolecular Potentials. 1. Derivation from Methanol Dimer and Trimer Calculations , 1999 .
[112] S. Walmsley. Lattice Vibrations and Elastic Constants of Molecular Crystals in the Pair Potential Approximation , 1968 .
[113] S. Price,et al. Use of molecular overlap to predict intermolecular repulsion in N ··· H—O hydrogen bonds , 1998 .
[114] A. Gavezzotti,et al. Empirical intermolecular potentials for organic crystals: the `6‐exp' approximation revisited , 1993 .
[115] S. Price,et al. The errors in lattice energy minimisation studies: sensitivity to experimental variations in the molecular structure of paracetamol , 2000 .
[116] Donald E. Williams,et al. Lone-pair electronic effects on the calculated ab initio SCF-MO electric potential and the crystal structures of azabenzenes , 1983 .
[117] G. Day,et al. The prediction, morphology, and mechanical properties of the polymorphs of paracetamol. , 2001, Journal of the American Chemical Society.
[118] Sarah L. Price,et al. Energy minimization of crystal structures containing flexible molecules , 2006 .
[119] Jan Kroon,et al. Ab initio crystal structure predictions for flexible hydrogen‐bonded molecules. Part II. Accurate energy minimization , 2001, J. Comput. Chem..
[120] A. Stone,et al. Atom–atom potentials from ab initio calculations , 2007 .
[121] Jan Kroon,et al. Crystal Structure Prediction for Six Monosaccharides Revisited , 2001 .
[122] R. Gdanitz. Prediction of molecular crystal structures by Monte Carlo simulated annealing without reference to diffraction data , 1992 .
[123] J. Dunitz,et al. Towards a Grammar of Crystal Packing , 1994 .
[124] Peddy Vishweshwar,et al. The predictably elusive form II of aspirin. , 2005, Journal of the American Chemical Society.
[125] A. Gavezzotti. Towards a realistic model for the quantitative evaluation of intermolecular potentials and for the rationalization of organic crystal structures. Part I. Philosophy , 2003 .
[126] Sarah L Price,et al. Can the Formation of Pharmaceutical Cocrystals Be Computationally Predicted? 2. Crystal Structure Prediction. , 2009, Journal of chemical theory and computation.
[127] G. Day,et al. Atomistic calculations of phonon frequencies and thermodynamic quantities for crystals of rigid organic molecules , 2003 .
[128] P. Hartman. The attachment energy as a habit controlling factor: III. Application to corundum , 1980 .
[129] M. Alderton,et al. Distributed multipole analysis , 2006 .
[130] Julio C. Facelli,et al. Modified genetic algorithms to model cluster structures in medium-sized silicon clusters: Si18-Si60 , 2006 .
[131] Patrick W. Fowler,et al. A model for the geometries of Van der Waals complexes , 1985 .
[132] M. Neumann. Tailor-made force fields for crystal-structure prediction. , 2008, The journal of physical chemistry. B.
[133] P. Ugliengo,et al. B3LYP augmented with an empirical dispersion term (B3LYP-D*) as applied to molecular crystals , 2008 .
[134] G. Day,et al. Towards prediction of stoichiometry in crystalline multicomponent complexes. , 2008, Chemistry.
[135] Harold A Scheraga,et al. Exercises in prognostication: crystal structures and protein folding. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[136] Stefan Grimme,et al. Accurate description of van der Waals complexes by density functional theory including empirical corrections , 2004, J. Comput. Chem..
[137] Lattice dynamical calculations on azabenzene crystals: The distributed dipole model , 1981 .
[138] Marc-Antoine Perrin,et al. Energy ranking of molecular crystals using density functional theory calculations and an empirical van der waals correction. , 2005, The journal of physical chemistry. B.
[139] Sarah L. Price,et al. A systematic intermolecular potential method applied to chlorine , 1990 .
[140] V. Bazterra,et al. Modified genetic algorithm to model crystal structures. I. Benzene, naphthalene and anthracene , 2002 .
[141] Julio C. Facelli,et al. Modified genetic algorithms to model cluster structures in medium-size silicon clusters , 2004 .
[142] Joannis Apostolakis,et al. Crystal structure prediction by data mining , 2003 .
[143] J. Dunitz,et al. Conformational polymorphism of dimethyl 3,6-dichloro-2,5-dihydroxyterephthalate. II, Structural, thermodynamic, kinetic and mechanistic aspects of phase transformations among the three crystal forms , 1990 .
[144] Jaroslaw Pillardy,et al. Conformation-family Monte Carlo: A new method for crystal structure prediction , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[145] Jaroslaw Pillardy,et al. Global optimization-based method for deriving intermolecular potential parameters for crystals , 2003 .
[146] Jan Kroon,et al. Ab Initio Crystal Structure Predictions for Flexible Hydrogen-Bonded Molecules , 2000 .
[147] Jan Kroon,et al. Fast clustering of equivalent structures in crystal structure prediction , 1997, J. Comput. Chem..
[148] J. Maddox. Crystals from first principles , 1988, Nature.
[149] A. Gavezzotti. Towards a realistic model for the quantitative evaluation of intermolecular potentials and for the rationalization of organic crystal structures. Part II. Crystal energy landscapes , 2003 .
[150] M. Simonetta,et al. The molecular structure of biphenyl in the gas and solid phases , 1968 .
[151] Robin Taylor,et al. Comparison of conformer distributions in the crystalline state with conformational energies calculated by ab initio techniques , 1996, J. Comput. Aided Mol. Des..
[152] Frank J. J. Leusen,et al. Computer Simulation to Predict Possible Crystal Polymorphs , 2007 .
[153] Ulf Ryde,et al. Comparison of methods for deriving atomic charges from the electrostatic potential and moments , 1998, J. Comput. Chem..
[154] Henry Margenau,et al. Theory of intermolecular forces , 1969 .
[155] A. Gavezzotti,et al. Polymorphic Forms of Organic Crystals at Room Conditions: Thermodynamic and Structural Implications , 1995 .
[156] Julio C. Facelli,et al. Modified genetic algorithm to model crystal structures: III. Determination of crystal structures allowing simultaneous molecular geometry relaxation , 2004 .
[157] S. Colson,et al. A critical evaluation of isotropic potential functions for chlorine , 1977 .
[158] W. Busing. Modeling the phase change in crystalline biphenyl by using a temperature‐dependent potential , 1983 .
[159] H. Scheraga,et al. Model for the crystal packing and conformational changes of biphenyl in incommensurate phase transitions. , 2004, Acta crystallographica. Section B, Structural science.
[160] M. Born,et al. Dynamical Theory of Crystal Lattices , 1954 .
[161] The,et al. A NEW LAW OF CRYSTAL MORPHOLOGY EXTENDING THE LAW OF BRAVAIS , 2007 .
[162] Sarah L Price,et al. Crystal structure prediction of small organic molecules: a second blind test. , 2002, Acta crystallographica. Section B, Structural science.
[163] A. Gavezzotti. Structure and intermolecular potentials in molecular crystals , 2002 .
[164] G. Day,et al. A study of the known and hypothetical crystal structures of pyridine: why are there four molecules in the asymmetric unit cell? , 2002 .
[165] S. Price,et al. Validation of a search technique for crystal structure prediction of flexible molecules by application to piracetam. , 2005, Acta crystallographica. Section B, Structural science.
[166] Nathan J. Harris and,et al. Ab Initio Density Functional Computations of Conformations and Bond Dissociation Energies for Hexahydro-1,3,5-trinitro-1,3,5-triazine , 1997 .
[167] F. Allen. The Cambridge Structural Database: a quarter of a million crystal structures and rising. , 2002, Acta crystallographica. Section B, Structural science.
[168] Sarah L. Price,et al. Toward Crystal Structure Prediction for Conformationally Flexible Molecules: The Headaches Illustrated by Aspirin , 2004 .
[169] P. Karamertzanis,et al. Spontaneous Resolution of Enantiomers by Crystallization: Insights from Computed Crystal Energy Landscapes , 2010 .
[170] A. Gavezzotti. Calculation of Intermolecular Interaction Energies by Direct Numerical Integration over Electron Densities. I. Electrostatic and Polarization Energies in Molecular Crystals , 2002 .
[171] H. Scheraga,et al. Derivation of a new force field for crystal-structure prediction using global optimization: Nonbonded potential parameters for amines, imidazoles, amides, and carboxylic acids , 2004 .
[172] F. Leusen,et al. Rationalization of Racemate Resolution: Predicting Spontaneous Resolution through Crystal Structure Prediction , 2007 .
[173] S. Price,et al. A Systematic Nonempirical Method of Deriving Model Intermolecular Potentials for Organic Molecules: Application To Amides , 2000 .
[174] Sarah L Price,et al. Modelling organic crystal structures using distributed multipole and polarizability-based model intermolecular potentials. , 2010, Physical chemistry chemical physics : PCCP.
[175] E. Halac,et al. Lattice dynamics, thermodynamic functions, and phase transitions of p‐dichloro‐ and 1,2,4,5‐tetrachlorobenzene , 1978 .