A model for quantifying oceanic transport and mesoscale variability in the Coral Triangle of the Indonesian/Philippines Archipelago

[1] The Indonesian Throughflow region (ITF) continues to pose significant research challenges with respect to its role in the global ocean circulation, the climate system, and the ecosystem sustainability in this region of maximum marine biodiversity. Complex geography and circulation features imply difficulties in both observational and numerical studies. In this work, results are presented from a newly developed high-resolution model for the Coral Triangle (CT) of the Indonesian/Philippines Archipelago specifically designed to address regional physical and ecological questions. Here, the model is used to quantify the transport through the various passages, sea surface temperature and mesoscale variability in the CT. Beyond extensive skill assessment exhibiting the model ability to represent many conspicuous features of the ITF, the high-resolution simulation is used to describe the mesoscale and submesoscale circulation through the application of Finite Size Lyapunov Exponents (FSLEs). The distribution of FSLEs is used to quantify the spatiotemporal variability in the regional mixing characteristics. The modeled seasonal and interannual variability of mixing suggests a link to large-scale climate signals such as ENSO and the Asian-Australian monsoon system.

[1]  David A. Siegel,et al.  Filamentation and eddy-eddy interactions in marine larval accumulation and transport , 2013 .

[2]  S. Schill,et al.  Integrating Climate and Ocean Change Vulnerability into Conservation Planning , 2012 .

[3]  T. R. Adi,et al.  Variability of Indonesian throughflow within Makassar Strait, 2004–2009 , 2012 .

[4]  T. R. Adi,et al.  South China Sea throughflow impact on the Indonesian throughflow , 2012 .

[5]  Thomas J. Weingartner,et al.  On ocean and sea ice modes of variability in the Bering Sea , 2011 .

[6]  Jiping Xie,et al.  An eddy resolving tidal-driven model of the South China Sea assimilating along-track SLA data using the EnOI , 2011 .

[7]  K. Nadaoka,et al.  Ocean circulation for the Indonesian seas driven by tides and atmospheric forcings: Comparison to observational data , 2011 .

[8]  S. Schubert,et al.  MERRA: NASA’s Modern-Era Retrospective Analysis for Research and Applications , 2011 .

[9]  Robert A. Arnone,et al.  Circulation in the Philippine Archipelago Simulated by 1/12° and 1/25° Global HYCOM and EAS NCOM , 2011 .

[10]  Dongxiao Wang,et al.  ENSO-induced interannual variability in the southeastern South China Sea , 2011 .

[11]  S. De Monte,et al.  Fluid dynamical niches of phytoplankton types , 2010, Proceedings of the National Academy of Sciences.

[12]  A. Turiel,et al.  How reliable are finite-size Lyapunov exponents for the assessment of ocean dynamics? , 2010, 1009.2419.

[13]  Walter Jetz,et al.  Global patterns and predictors of marine biodiversity across taxa , 2010, Nature.

[14]  K. Casey,et al.  Warming Seas in the Coral Triangle: Coral Reef Vulnerability and Management Implications , 2010 .

[15]  Janet Sprintall,et al.  Simulated and observed circulation in the Indonesian Seas: 1/12° global HYCOM and the INSTANT observations , 2010 .

[16]  R. Robertson Tidal currents and mixing at the INSTANT mooring locations , 2010 .

[17]  A. Gordon,et al.  Modeling and Observing the Indonesian Throughflow a special issue of dynamics of atmosphere and ocean , 2010 .

[18]  Yan Du,et al.  Three inflow pathways of the Indonesian throughflow as seen from the simple ocean data assimilation , 2010 .

[19]  A. Gordon,et al.  The Indonesian throughflow during 2004–2006 as observed by the INSTANT program , 2010 .

[20]  W. Kessler,et al.  Thermocline Circulation in the Solomon Sea: A Modeling Study* , 2010 .

[21]  Kenneth S. Casey,et al.  New insights into global patterns of ocean temperature anomalies: implications for coral reef health and management , 2010 .

[22]  A. Samah,et al.  The cold tongue in the South China Sea during boreal winter and its interaction with the atmosphere , 2010 .

[23]  James C. McWilliams,et al.  Correction and commentary for "Ocean forecasting in terrain-following coordinates: Formulation and skill assessment of the regional ocean modeling system" by Haidvogel et al., J. Comp. Phys 227, pp 3595-3624 , 2009, J. Comput. Phys..

[24]  Alison Green,et al.  Designing marine protected area networks to address the impacts of climate change , 2009 .

[25]  Indra Jaya,et al.  The deep-water motion through the Lifamatola Passage and its contribution to the Indonesian throughflow , 2009 .

[26]  Stephen G. Yeager,et al.  The global climatology of an interannually varying air–sea flux data set , 2009 .

[27]  H. Cui,et al.  Water transports through the four main straits around the South China Sea , 2009 .

[28]  J. Sprintall,et al.  Direct estimates of the Indonesian Throughflow entering the Indian Ocean: 2004–2006 , 2009 .

[29]  W. Skirving,et al.  Sea-surface temperature and thermal stress in the Coral Triangle over the past two decades , 2009, Coral Reefs.

[30]  Hernan G. Arango,et al.  Seasonal surface ocean circulation and dynamics in the Philippine Archipelago region during 2004–2008 , 2009 .

[31]  T. Yamagata,et al.  An introduction to the South China Sea throughflow: Its dynamics, variability, and application for climate , 2009 .

[32]  Widodo Setiyo Pranowo,et al.  Makassar Strait throughflow, 2004 to 2006 , 2008 .

[33]  Cristóbal López,et al.  Comparison between Eulerian diagnostics and finite-size Lyapunov exponents computed from altimetry in the Algerian basin , 2008, 0807.3848.

[34]  A. Ffield,et al.  Baroclinic tides in the Indonesian seas: Tidal fields and comparisons to observations , 2008 .

[35]  V. Garçon,et al.  Comparative study of mixing and biological activity of the Benguela and Canary upwelling systems , 2008 .

[36]  John C. Warner,et al.  Ocean forecasting in terrain-following coordinates: Formulation and skill assessment of the Regional Ocean Modeling System , 2008, J. Comput. Phys..

[37]  S. Erofeeva,et al.  Numerical study of the tide and tidal dynamics in the South China Sea , 2008 .

[38]  G. Vecchi,et al.  The Role of the Indonesian Throughflow in the Indo–Pacific Climate Variability in the GFDL Coupled Climate Model , 2007 .

[39]  T. Gerkema,et al.  On the transformation of Pacific Water into Indonesian Throughflow Water by internal tidal mixing , 2007 .

[40]  Ryo Furue,et al.  South China Sea throughflow as evidenced by satellite images and numerical experiments , 2007 .

[41]  J. Marsden,et al.  Definition and properties of Lagrangian coherent structures from finite-time Lyapunov exponents in two-dimensional aperiodic flows , 2005 .

[42]  Gary Meyers,et al.  Sea Surface Temperature and its Variability in the Indonesian Region , 2005 .

[43]  A. Ffield,et al.  M2 Baroclinic Tides in the Indonesian Seas , 2005 .

[44]  A. Gordon Oceanography of the Indonesian Seas and Their Throughflow , 2005 .

[45]  Gary D. Egbert,et al.  A brief overview of tides in the Indonesian Seas , 2005 .

[46]  Q. Zheng,et al.  A note on the South China Sea shallow interocean circulation , 2005 .

[47]  Thomas M. Powell,et al.  Multi‐scale modeling of the North Pacific Ocean: Assessment and analysis of simulated basin‐scale variability (1996–2003) , 2005 .

[48]  J. Warner,et al.  Numerical modeling of an estuary: A comprehensive skill assessment , 2005 .

[49]  L. S. Laurent,et al.  Small and mesoscale processes and their impact on the large scale:an introduction , 2004 .

[50]  Takaki Hatayama Transformation of the Indonesian Throughflow Water by Vertical Mixing and Its Relation to Tidally Generated Internal Waves , 2004 .

[51]  F. d’Ovidio,et al.  Mixing structures in the Mediterranean Sea from finite‐size Lyapunov exponents , 2004, nlin/0404041.

[52]  A. Gordon,et al.  Cool Indonesian throughflow as a consequence of restricted surface layer flow , 2003, Nature.

[53]  W. Timothy Liu,et al.  Summer upwelling in the South China Sea and its role in regional climate variations , 2003 .

[54]  James C. McWilliams,et al.  Equilibrium structure and dynamics of the California Current System , 2003 .

[55]  James C. McWilliams,et al.  A method for computing horizontal pressure‐gradient force in an oceanic model with a nonaligned vertical coordinate , 2003 .

[56]  R. Neale,et al.  The Maritime Continent and Its Role in the Global Climate: A GCM Study , 2003 .

[57]  H. Burchard,et al.  A generic length-scale equation for geophysical turbulence models , 2003 .

[58]  Yue Fang,et al.  Interbasin freshwater, heat and salt transport through the boundaries of the East and South China Seas from a variable-grid global ocean circulation model , 2003 .

[59]  Kevin E. Trenberth,et al.  Estimates of Freshwater Discharge from Continents: Latitudinal and Seasonal Variations , 2002 .

[60]  Thomas M. Smith,et al.  An Improved In Situ and Satellite SST Analysis for Climate , 2002 .

[61]  G. Haller Lagrangian coherent structures from approximate velocity data , 2002 .

[62]  G. Egbert,et al.  Efficient Inverse Modeling of Barotropic Ocean Tides , 2002 .

[63]  E. Schneider,et al.  The Indonesian Throughflow's Effect on Global Climate Determined from the COLA Coupled Climate System , 2001 .

[64]  Guido Boffetta,et al.  Detecting barriers to transport: a review of different techniques , 2001, nlin/0102022.

[65]  G. Haller,et al.  Lagrangian coherent structures and mixing in two-dimensional turbulence , 2000 .

[66]  Alexander F. Shchepetkin,et al.  Model evaluation experiments in the North Atlantic Basin : simulations in nonlinear terrain-following coordinates , 2000 .

[67]  A. Gordon,et al.  A semiannual Indian Ocean forced Kelvin wave observed in the Indonesian seas in May 1997 , 2000 .

[68]  Humio Mitsudera,et al.  Intrusion of the North Pacific waters into the South China Sea , 2000 .

[69]  James A. Carton,et al.  A Simple Ocean Data Assimilation Analysis of the Global Upper Ocean 1950–95. Part I: Methodology , 2000 .

[70]  James A. Carton,et al.  A Simple Ocean Data Assimilation Analysis of the Global Upper Ocean 1950-95. Part II: Results , 2000 .

[71]  Antonio J. Busalacchi,et al.  The Tropical Ocean‐Global Atmosphere observing system: A decade of progress , 1998 .

[72]  Arnold L. Gordon,et al.  Tidal Mixing Signatures in the Indonesian Seas , 1996 .

[73]  A. Crisanti,et al.  Predictability in the large: an extension of the concept of Lyapunov exponent , 1996, chao-dyn/9606014.

[74]  H. Hurlburt,et al.  Coupled dynamics of the South China Sea, the Sulu Sea, and the Pacific Ocean , 1996 .

[75]  J. S. Godfrey The effect of the Indonesian throughflow on ocean circulation and heat exchange with the atmosphere: A review , 1996 .

[76]  T. Yamagata,et al.  Pacific low‐latitude western boundary currents and the Indonesian throughflow , 1996 .

[77]  A. Gordon,et al.  Pathways of water between the Pacific and Indian oceans in the Indonesian seas , 1996, Nature.

[78]  W. Large,et al.  Oceanic vertical mixing: a review and a model with a nonlocal boundary layer parameterization , 1994 .

[79]  J. S. Godfrey,et al.  The role of Indonesian throughflow in a global ocean GCM , 1993 .

[80]  J. S. Godfrey A sverdrup model of the depth-integrated flow for the world ocean allowing for island circulations , 1989 .

[81]  P. Ridd,et al.  Currents through Torres Strait , 1988 .

[82]  J. Bjerknes ATMOSPHERIC TELECONNECTIONS FROM THE EQUATORIAL PACIFIC1 , 1969 .

[83]  H. Possingham,et al.  Biophysical principles for designing resilient networks of marine protected areas to integrate fisheries, biodiversity and climate change objectives in the Coral Triangle , 2012 .

[84]  M. Jeroen Molemaker,et al.  Are there inescapable issues prohibiting the use of terrain-following coordinates in climate models? , 2012 .

[85]  Ambariyanto,et al.  Comparative Phylogeography of the Coral Triangle and Implications for Marine Management , 2011 .

[86]  R. Robertson Interactions between tides and other frequencies in the Indonesian seas , 2011 .

[87]  E. Joseph Metzger,et al.  Concurrent Simulation of the Eddying General Circulation and Tides in a Global Ocean Model , 2010 .

[88]  Linear Filtering,et al.  Linear Filtering , 2010 .

[89]  Alison Green,et al.  Delineating the Coral Triangle , 2009 .

[90]  Laurent Debreu,et al.  Spurious diapycnal mixing in terrain-following coordinate models: The problem and a solution , 2009 .

[91]  M. Batteen,et al.  On reducing the slope parameter in terrain-following numerical ocean models , 2006 .

[92]  John C. Warner,et al.  Performance of four turbulence closure models implemented using a generic length scale method , 2005 .

[93]  Alexander F. Shchepetkin,et al.  The regional oceanic modeling system (ROMS): a split-explicit, free-surface, topography-following-coordinate oceanic model , 2005 .

[94]  A. Schiller Effects of explicit tidal forcing in an OGCM on the water-mass structure and circulation in the Indonesian throughflow region , 2004 .

[95]  T. Qu,et al.  The Bifurcation of the North Equatorial Current in the Pacific , 2003 .

[96]  S. Ackleson Ocean Optics Research at the Start of the 21st Century , 2001 .

[97]  Alexander F. Shchepetkin,et al.  Open boundary conditions for long-term integration of regional oceanic models , 2001 .

[98]  A. Gordon,et al.  Makassar Strait transport: Initial estimate based on Arlindo results , 1998 .

[99]  A. Bakun Patterns in the ocean: Ocean processes and marine population dynamics , 1996 .