Cyanobacterial ClpC/HSP100 Protein Displays Intrinsic Chaperone Activity*

HSP100 proteins are molecular chaperones that belong to the broader family of AAA+ proteins (ATPases associated with a variety of cellular activities) known to promote protein unfolding, disassembly of protein complexes and translocation of proteins across membranes. The ClpC form of HSP100 is an essential, highly conserved, constitutively expressed protein in cyanobacteria and plant chloroplasts, and yet little is known regarding its specific activity as a molecular chaperone. To address this point, ClpC from the cyanobacterium Synechococcus elongatus (SyClpC) was purified using an Escherichia coli-based overexpression system. Recombinant SyClpC showed basal ATPase activity, similar to that of other types of HSP100 protein in non-photosynthetic organisms but different to ClpC in Bacillus subtilis. SyClpC also displayed distinct intrinsic chaperone activity in vitro, first by preventing aggregation of unfolded polypeptides and second by resolubilizing and refolding aggregated proteins into their native structures. The refolding activity of SyClpC was enhanced 3-fold in the presence of the B. subtilis ClpC adaptor protein MecA. Overall, the distinctive ClpC protein in photosynthetic organisms indeed functions as an independent molecular chaperone, and it is so far unique among HSP100 proteins in having both “holding” and disaggregase chaperone activities without the need of other chaperones or adaptor proteins.

[1]  S. Lindquist,et al.  The function of heat-shock proteins in stress tolerance: degradation and reactivation of damaged proteins. , 1993, Annual review of genetics.

[2]  F P Booy,et al.  At sixes and sevens: characterization of the symmetry mismatch of the ClpAP chaperone-assisted protease. , 1998, Journal of structural biology.

[3]  A. Clarke,et al.  Inactivation of the clpC1 Gene Encoding a Chloroplast Hsp100 Molecular Chaperone Causes Growth Retardation, Leaf Chlorosis, Lower Photosynthetic Activity, and a Specific Reduction in Photosystem Content1 , 2004, Plant Physiology.

[4]  P. A. Lanzetta,et al.  An improved assay for nanomole amounts of inorganic phosphate. , 1979, Analytical biochemistry.

[5]  A. Clarke,et al.  The cyanobacterium Synechococcus sp. PCC 7942 possesses a close homologue to the chloroplast ClpC protein of higher plants , 1996, Plant Molecular Biology.

[6]  Susan Lindquist,et al.  Protein disaggregation mediated by heat-shock protein Hspl04 , 1994, Nature.

[7]  宁北芳,et al.  疟原虫var基因转换速率变化导致抗原变异[英]/Paul H, Robert P, Christodoulou Z, et al//Proc Natl Acad Sci U S A , 2005 .

[8]  Wah Chiu,et al.  The Structure of ClpB A Molecular Chaperone that Rescues Proteins from an Aggregated State , 2003, Cell.

[9]  D. Dubnau,et al.  Growth medium-independent genetic competence mutants of Bacillus subtilis , 1990, Journal of bacteriology.

[10]  Christine B. Trame,et al.  Crystal and Solution Structures of an HslUV Protease–Chaperone Complex , 2000, Cell.

[11]  S. Lindquist,et al.  Hsp104, Hsp70, and Hsp40 A Novel Chaperone System that Rescues Previously Aggregated Proteins , 1998, Cell.

[12]  Jimena Weibezahn,et al.  Characterization of a Trap Mutant of the AAA+ Chaperone ClpB* , 2003, Journal of Biological Chemistry.

[13]  J. Hoskins,et al.  The role of the ClpA chaperone in proteolysis by ClpAP. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[14]  S. Lindquist,et al.  Cooperative kinetics of both Hsp104 ATPase domains and interdomain communication revealed by AAA sensor‐1 mutants , 2002, The EMBO journal.

[15]  L. Esser,et al.  Crystal Structure of the Heterodimeric Complex of the Adaptor, ClpS, with the N-domain of the AAA+ Chaperone, ClpA* , 2002, The Journal of Biological Chemistry.

[16]  S. Lindquist,et al.  The ATPase Activity of Hsp104, Effects of Environmental Conditions and Mutations* , 1998, The Journal of Biological Chemistry.

[17]  H. Yoshikawa,et al.  Characterization of the dnaK Multigene Family in the Cyanobacterium Synechococcus sp. Strain PCC7942 , 2001, Journal of bacteriology.

[18]  A. Clarke,et al.  The ATP‐dependent Clp protease in chloroplasts of higher plants , 2005 .

[19]  A. Clarke,et al.  Characterization of Chloroplast Clp proteins in Arabidopsis: Localization, tissue specificity and stress responses. , 2002, Physiologia plantarum.

[20]  J. Frydman,et al.  Protein folding in vivo: the importance of molecular chaperones. , 2000, Current opinion in structural biology.

[21]  A. Steven,et al.  Enzymatic and Structural Similarities between theEscherichia coli ATP-dependent Proteases, ClpXP and ClpAP* , 1998, The Journal of Biological Chemistry.

[22]  A. Clarke,et al.  Inactivation of the clpP1 gene for the proteolytic subunit of the ATP-dependent Clp protease in the cyanobacterium Synechococcus limits growth and light acclimation , 1998, Plant Molecular Biology.

[23]  D. Dubnau,et al.  A MecA Paralog, YpbH, Binds ClpC, Affecting both Competence and Sporulation , 2002, Journal of bacteriology.

[24]  D. Dubnau,et al.  Biochemical characterization of a molecular switch involving the heat shock protein ClpC, which controls the activity of ComK, the competence transcription factor of Bacillus subtilis. , 1997, Genes & development.

[25]  Bernd Bukau,et al.  Structural analysis of the adaptor protein ClpS in complex with the N-terminal domain of ClpA , 2002, Nature Structural Biology.

[26]  K. Koretke,et al.  Bioinformatic analysis of ClpS, a protein module involved in prokaryotic and eukaryotic protein degradation. , 2003, Journal of structural biology.

[27]  M. Hecker,et al.  Stress induction of clpC in Bacillus subtilis and its involvement in stress tolerance , 1994, Journal of bacteriology.

[28]  Bernd Bukau,et al.  The Hsp70 and Hsp60 Chaperone Machines , 1998, Cell.

[29]  G. Rapoport,et al.  MecB of Bacillus subtilis, a member of the ClpC ATPase family, is a pleiotropic regulator controlling competence gene expression and growth at high temperature. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[30]  S. Gottesman,et al.  A molecular chaperone, ClpA, functions like DnaK and DnaJ. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[31]  T. Baker,et al.  A specificity-enhancing factor for the ClpXP degradation machine. , 2000, Science.

[32]  J. Seol,et al.  The 65-kDa protein derived from the internal translational initiation site of the clpA gene inhibits the ATP-dependent protease Ti in Escherichia coli. , 1994, The Journal of biological chemistry.

[33]  M. Zółkiewski,et al.  ClpB Cooperates with DnaK, DnaJ, and GrpE in Suppressing Protein Aggregation , 1999, The Journal of Biological Chemistry.

[34]  S. Rüdiger,et al.  Identification of thermolabile Escherichia coli proteins: prevention and reversion of aggregation by DnaK and ClpB , 1999, The EMBO journal.

[35]  J. Soll,et al.  Toc, tic, and chloroplast protein import. , 2001, Biochimica et biophysica acta.

[36]  M. Lonetto,et al.  A functional genomic analysis of type 3 Streptococcus pneumoniae virulence , 2001, Molecular microbiology.

[37]  K. Keegstra,et al.  Stable association of chloroplastic precursors with protein translocation complexes that contain proteins from both envelope membranes and a stromal Hsp100 molecular chaperone , 1997, The EMBO journal.

[38]  Robert Huber,et al.  The structures of HslU and the ATP-dependent protease HslU–HslV , 2000, Nature.

[39]  P. Berche,et al.  The ClpC ATPase of Listeria monocytogenes is a general stress protein required for virulence and promoting early bacterial escape from the phagosome of macrophages , 1998, Molecular microbiology.

[40]  P. Berche,et al.  Identification of a ClpC ATPase required for stress tolerance and in vivo survival of Listeria monocytogenes , 1996, Molecular microbiology.

[41]  B. Bukau,et al.  MecA, an adaptor protein necessary for ClpC chaperone activity , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[42]  A. Clarke ATP-dependent Clp Proteases in Photosynthetic Organisms— A Cut Above the Rest! , 1999 .

[43]  A. Clarke,et al.  The heat shock protein ClpB mediates the development of thermotolerance in the cyanobacterium Synechococcus sp. strain PCC 7942 , 1996, Journal of bacteriology.

[44]  G. Storz,et al.  The response regulator RssB controls stability of the sigma(S) subunit of RNA polymerase in Escherichia coli. , 1996, The EMBO journal.

[45]  A. Zvi,et al.  Sequential mechanism of solubilization and refolding of stable protein aggregates by a bichaperone network. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[46]  D. Dubnau,et al.  The N‐ and C‐terminal domains of MecA recognize different partners in the competence molecular switch , 1999, Molecular microbiology.

[47]  S. Lindquist,et al.  HSP104 required for induced thermotolerance. , 1990, Science.