Phase retrieval by coherent modulation imaging

Phase retrieval is a long-standing problem in imaging when only the intensity of the wavefield can be recorded. Coherent diffraction imaging is a lensless technique that uses iterative algorithms to recover amplitude and phase contrast images from diffraction intensity data. For general samples, phase retrieval from a single-diffraction pattern has been an algorithmic and experimental challenge. Here we report a method of phase retrieval that uses a known modulation of the sample exit wave. This coherent modulation imaging method removes inherent ambiguities of coherent diffraction imaging and uses a reliable, rapidly converging iterative algorithm involving three planes. It works for extended samples, does not require tight support for convergence and relaxes dynamic range requirements on the detector. Coherent modulation imaging provides a robust method for imaging in materials and biological science, while its single-shot capability will benefit the investigation of dynamical processes with pulsed sources, such as X-ray free-electron lasers.

[1]  B. Lai,et al.  The Bionanoprobe: hard X-ray fluorescence nanoprobe with cryogenic capabilities , 2013, Journal of synchrotron radiation.

[2]  James R. Fienup,et al.  Phase-retrieval stagnation problems and solutions , 1986 .

[3]  Georg Weidenspointner,et al.  Femtosecond X-ray protein nanocrystallography , 2011, Nature.

[4]  J. R. Fienup,et al.  The Effects Of Tapered Illumination And Fourier Intensity Errors On Phase Retrieval , 1988, Optics & Photonics.

[5]  O. Bunk,et al.  High-Resolution Scanning X-ray Diffraction Microscopy , 2008, Science.

[6]  J. Miao,et al.  Extending the methodology of X-ray crystallography to allow imaging of micrometre-sized non-crystalline specimens , 1999, Nature.

[7]  H. Sinn,et al.  Nanofocusing of hard X-ray free electron laser pulses using diamond based Fresnel zone plates , 2011, Scientific reports.

[8]  O. Bunk,et al.  Coherent diffractive imaging using phase front modifications. , 2008, Physical review letters.

[9]  J. Rodenburg,et al.  An improved ptychographical phase retrieval algorithm for diffractive imaging. , 2009, Ultramicroscopy.

[10]  Georg Weidenspointner,et al.  Femtosecond dark-field imaging with an X-ray free electron laser. , 2012, Optics express.

[11]  D. Ratner,et al.  First lasing and operation of an ångstrom-wavelength free-electron laser , 2010 .

[12]  G. Pedrini,et al.  Phase retrieval of arbitrary complex-valued fields through aperture-plane modulation , 2007 .

[13]  W. H. Benner,et al.  Femtosecond diffractive imaging with a soft-X-ray free-electron laser , 2006, physics/0610044.

[14]  J. Zuo,et al.  Atomic Resolution Imaging of a Carbon Nanotube from Diffraction Intensities , 2003, Science.

[15]  T. Ishikawa,et al.  A compact X-ray free-electron laser emitting in the sub-ångström region , 2012, Nature Photonics.

[16]  Yonina C. Eldar,et al.  Phase Retrieval with Application to Optical Imaging: A contemporary overview , 2015, IEEE Signal Processing Magazine.

[17]  J. Hajdu,et al.  Potential for biomolecular imaging with femtosecond X-ray pulses , 2000, Nature.

[18]  A. G. Cullis,et al.  Hard-x-ray lensless imaging of extended objects. , 2007, Physical review letters.

[19]  Jun Tanida,et al.  Single-shot phase imaging with randomized light (SPIRaL). , 2016, Optics express.

[20]  Ichirou Yamaguchi,et al.  Algorithm for reconstruction of digital holograms with adjustable magnification. , 2004, Optics letters.

[21]  J. Kirz,et al.  Biological imaging by soft x-ray diffraction microscopy , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[22]  Manuel Guizar-Sicairos,et al.  Efficient subpixel image registration algorithms. , 2008, Optics letters.

[23]  Manuel Guizar-Sicairos,et al.  Understanding the twin-image problem in phase retrieval. , 2012, Journal of the Optical Society of America. A, Optics, image science, and vision.

[24]  Jean-Michel Claverie,et al.  Three-dimensional reconstruction of the giant mimivirus particle with an x-ray free-electron laser. , 2015, Physical review letters.

[25]  Alexandre d'Aspremont,et al.  Coherent diffractive imaging using randomly coded masks , 2015, 1509.03229.

[26]  J. Kirz,et al.  Incorrect support and missing center tolerances of phasing algorithms. , 2010, Optics express.

[27]  A. Diaz,et al.  Translation position determination in ptychographic coherent diffraction imaging. , 2013, Optics express.

[28]  K. Nugent,et al.  Diffraction with wavefront curvature: a path to unique phase recovery. , 2005, Acta crystallographica. Section A, Foundations of crystallography.

[29]  Roberto Dinapoli,et al.  PILATUS: A single photon counting pixel detector for X-ray applications , 2009 .

[30]  O. Bunk,et al.  X-ray ptychographic computed tomography at 16 nm isotropic 3D resolution , 2014, Scientific Reports.

[31]  Anton Barty,et al.  Molecular imaging using X-ray free-electron lasers. , 2018, Annual review of physical chemistry.

[32]  Anton Barty,et al.  Imaging single cells in a beam of live cyanobacteria with an X-ray laser , 2015, Nature Communications.

[33]  Veit Elser Phase retrieval by iterated projections. , 2003, Journal of the Optical Society of America. A, Optics, image science, and vision.

[34]  J. Nicolas,et al.  MISTRAL: a transmission soft X-ray microscopy beamline for cryo nano-tomography of biological samples and magnetic domains imaging. , 2015, Journal of synchrotron radiation.

[35]  J. Kirz,et al.  An assessment of the resolution limitation due to radiation-damage in x-ray diffraction microscopy. , 2005, Journal of Electron Spectroscopy and Related Phenomena.

[36]  A. Fannjiang,et al.  Phase retrieval with random phase illumination. , 2012, Journal of the Optical Society of America. A, Optics, image science, and vision.

[37]  J. Miao,et al.  Beyond crystallography: Diffractive imaging using coherent x-ray light sources , 2015, Science.

[38]  Nobuharu Nakajima,et al.  Noniterative phase retrieval from a single diffraction intensity pattern by use of an aperture array. , 2007, Physical review letters.

[39]  Ronald M. Berndt,et al.  A Contemporary Overview , 1988 .

[40]  M. Guizar‐Sicairos,et al.  Signal-to-noise criterion for free-propagation imaging techniques at free-electron lasers and synchrotrons. , 2016, Optics express.

[41]  Pavel Sidorenko,et al.  Single-shot ptychography , 2016 .

[42]  Garth J. Williams,et al.  Single mimivirus particles intercepted and imaged with an X-ray laser , 2011, Nature.

[43]  J. Rodenburg,et al.  Phase retrieval based on wave-front relay and modulation , 2010 .

[44]  S. Marchesini,et al.  X-ray image reconstruction from a diffraction pattern alone , 2003, physics/0306174.

[45]  H. Sinn,et al.  Damage investigation on tungsten and diamond diffractive optics at a hard x-ray free-electron laser. , 2013, Optics express.

[46]  J R Fienup,et al.  Reconstruction of an object from the modulus of its Fourier transform. , 1978, Optics letters.

[47]  Garth J. Williams,et al.  Three-dimensional mapping of a deformation field inside a nanocrystal , 2006, Nature.

[48]  Elina Färm,et al.  Ultra-high resolution zone-doubled diffractive X-ray optics for the multi-keV regime. , 2011, Optics express.

[49]  S. Marchesini,et al.  High-resolution ab initio three-dimensional x-ray diffraction microscopy. , 2005, Journal of the Optical Society of America. A, Optics, image science, and vision.

[50]  Justin S. Wark,et al.  Ultrafast Three-Dimensional Imaging of Lattice Dynamics in Individual Gold Nanocrystals , 2013, Science.

[51]  Garth J. Williams,et al.  Keyhole coherent diffractive imaging , 2008 .