Compareads: comparing huge metagenomic experiments
暂无分享,去创建一个
Dominique Lavenier | Rayan Chikhi | Pierre Peterlongo | Claire Lemaitre | Nicolas Maillet | R. Chikhi | D. Lavenier | Nicolas Maillet | C. Lemaitre | P. Peterlongo
[1] Tyson A. Clark,et al. HITS-CLIP yields genome-wide insights into brain alternative RNA processing , 2008, Nature.
[2] Andrei Broder,et al. Network Applications of Bloom Filters: A Survey , 2004, Internet Math..
[3] Burton H. Bloom,et al. Space/time trade-offs in hash coding with allowable errors , 1970, CACM.
[4] Alexander F. Auch,et al. MEGAN analysis of metagenomic data. , 2007, Genome research.
[5] Eric Karsenti. Towards an ‘Oceans Systems Biology' , 2012, Molecular systems biology.
[6] Alison S. Waller,et al. Assessment of Metagenomic Assembly Using Simulated Next Generation Sequencing Data , 2012, PloS one.
[7] P. Bork,et al. Environments shape the nucleotide composition of genomes , 2005, EMBO reports.
[8] A. Mortazavi,et al. Genome-Wide Mapping of in Vivo Protein-DNA Interactions , 2007, Science.
[9] I-Min A. Chen,et al. IMG/M: the integrated metagenome data management and comparative analysis system , 2011, Nucleic Acids Res..
[10] A. Halpern,et al. The Sorcerer II Global Ocean Sampling Expedition: Northwest Atlantic through Eastern Tropical Pacific , 2007, PLoS biology.
[11] Alexander Goesmann,et al. Comparative and Joint Analysis of Two Metagenomic Datasets from a Biogas Fermenter Obtained by 454-Pyrosequencing , 2011, PloS one.
[12] K. Schleifer,et al. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. , 1995, Microbiological reviews.
[13] Veerle Fack,et al. Prospects and limitations of full-text index structures in genome analysis , 2012, Nucleic acids research.
[14] Arend Hintze,et al. Scaling metagenome sequence assembly with probabilistic de Bruijn graphs , 2011, Proceedings of the National Academy of Sciences.
[15] P. Bork,et al. Prediction of effective genome size in metagenomic samples , 2007, Genome Biology.
[16] E. Myers,et al. Basic local alignment search tool. , 1990, Journal of molecular biology.
[17] Siu-Ming Yiu,et al. MetaCluster 4.0: A Novel Binning Algorithm for NGS Reads and Huge Number of Species , 2012, J. Comput. Biol..
[18] Enno Ohlebusch,et al. Replacing suffix trees with enhanced suffix arrays , 2004, J. Discrete Algorithms.
[19] John C. Wooley,et al. A Primer on Metagenomics , 2010, PLoS Comput. Biol..
[20] G. Church,et al. Functional Characterization of the Antibiotic Resistance Reservoir in the Human Microflora , 2009, Science.
[21] M. Blaxter,et al. RADSeq: next-generation population genetics. , 2010, Briefings in functional genomics.
[22] Elizabeth M Glass,et al. From genomics to metagenomics. , 2012, Current opinion in biotechnology.