Factoring nonnegative matrices with linear programs
This paper describes a new approach, based on linear programming, for computing nonnegative matrix factorizations (NMFs). The key idea is a data-driven model for the factorization where the most salient features in the data are used to express the remaining features. More precisely, given a data matrix X, the algorithm identifies a matrix C that satisfies X ≈ CX and some linear constraints. The constraints are chosen to ensure that the matrix C selects features; these features can then be used to find a low-rank NMF of X. A theoretical analysis demonstrates that this approach has guarantees similar to those of the recent NMF algorithm of Arora et al. (2012). In contrast with this earlier work, the proposed method extends to more general noise models and leads to efficient, scalable algorithms. Experiments with synthetic and real datasets provide evidence that the new approach is also superior in practice. An optimized C++ implementation can factor a multigigabyte matrix in a matter of minutes.
Fast Nonnegative Matrix Tri-Factorization for Large-Scale Data Co-Clustering
Nonnegative Matrix Factorization (NMF) based coclustering methods have attracted increasing attention in recent years because of their mathematical elegance and encouraging empirical results. However, the algorithms to solve NMF problems usually involve intensive matrix multiplications, which make them computationally inefficient. In this paper, instead of constraining the factor matrices of NMF to be nonnegative as existing methods, we propose a novel Fast Nonnegative Matrix Trifactorization (FNMTF) approach to constrain them to be cluster indicator matrices, a special type of nonnegative matrices. As a result, the optimization problem of our approach can be decoupled, which results in much smaller size subproblems requiring much less matrix multiplications, such that our approach works well for large-scale input data. Moreover, the resulted factor matrices can directly assign cluster labels to data points and features due to the nature of indicator matrices. In addition, through exploiting the manifold structures in both data and feature spaces, we further introduce the Locality Preserved FNMTF (LP-FNMTF) approach, by which the clustering performance is improved. The promising results in extensive experimental evaluations validate the effectiveness of the proposed methods.
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