Nonnegative Matrix and Tensor Factorization T
This book provides a broad survey of models and efficient algorithms for Nonnegative Matrix Factorization (NMF). This includes NMFs various extensions and modifications, especially Nonnegative Tensor Factorizations (NTF) and Nonnegative Tucker Decompositions (NTD). NMF/NTF and their extensions are increasingly used as tools in signal and image processing, and data analysis, having garnered interest due to their capability to provide new insights and relevant information about the complex latent relationships in experimental data sets. It is suggested that NMF can provide meaningful components with physical interpretations; for example, in bioinformatics, NMF and its extensions have been successfully applied to gene expression, sequence analysis, the functional characterization of genes, clustering and text mining. As such, the authors focus on the algorithms that are most useful in practice, looking at the fastest, most robust, and suitable for large-scale models. Key features: Acts as a single source reference guide to NMF, collating information that is widely dispersed in current literature, including the authors own recently developed techniques in the subject area. Uses generalized cost functions such as Bregman, Alpha and Beta divergences, to present practical implementations of several types of robust algorithms, in particular Multiplicative, Alternating Least Squares, Projected Gradient and Quasi Newton algorithms. Provides a comparative analysis of the different methods in order to identify approximation error and complexity. Includes pseudo codes and optimized MATLAB source codes for almost all algorithms presented in the book. The increasing interest in nonnegative matrix and tensor factorizations, as well as decompositions and sparse representation of data, will ensure that this book is essential reading for engineers, scientists, researchers, industry practitioners and graduate students across signal and image processing; neuroscience; data mining and data analysis; computer science; bioinformatics; speech processing; biomedical engineering; and multimedia.
Nonnegative Matrix and Tensor Factorizations - Applications to Exploratory Multi-way Data Analysis and Blind Source Separation
This book provides a broad survey of models and efficient algorithms for Nonnegative Matrix Factorization (NMF). This includes NMFs various extensions and modifications, especially Nonnegative Tensor Factorizations (NTF) and Nonnegative Tucker Decompositions (NTD). NMF/NTF and their extensions are increasingly used as tools in signal and image processing, and data analysis, having garnered interest due to their capability to provide new insights and relevant information about the complex latent relationships in experimental data sets. It is suggested that NMF can provide meaningful components with physical interpretations; for example, in bioinformatics, NMF and its extensions have been successfully applied to gene expression, sequence analysis, the functional characterization of genes, clustering and text mining. As such, the authors focus on the algorithms that are most useful in practice, looking at the fastest, most robust, and suitable for large-scale models. Key features: Acts as a single source reference guide to NMF, collating information that is widely dispersed in current literature, including the authors own recently developed techniques in the subject area. Uses generalized cost functions such as Bregman, Alpha and Beta divergences, to present practical implementations of several types of robust algorithms, in particular Multiplicative, Alternating Least Squares, Projected Gradient and Quasi Newton algorithms. Provides a comparative analysis of the different methods in order to identify approximation error and complexity. Includes pseudo codes and optimized MATLAB source codes for almost all algorithms presented in the book. The increasing interest in nonnegative matrix and tensor factorizations, as well as decompositions and sparse representation of data, will ensure that this book is essential reading for engineers, scientists, researchers, industry practitioners and graduate students across signal and image processing; neuroscience; data mining and data analysis; computer science; bioinformatics; speech processing; biomedical engineering; and multimedia.
Fast Local Algorithms for Large Scale Nonnegative Matrix and Tensor Factorizations
Nonnegative matrix factorization (NMF) and its extensions such as Nonnegative Tensor Factorization (NTF) have become prominent techniques for blind sources separation (BSS), analysis of image databases, data mining and other information retrieval and clustering applications. In this paper we propose a family of efficient algorithms for NMF/NTF, as well as sparse nonnegative coding and representation, that has many potential applications in computational neuroscience, multi-sensory processing, compressed sensing and multidimensional data analysis. We have developed a class of optimized local algorithms which are referred to as Hierarchical Alternating Least Squares (HALS) algorithms. For these purposes, we have performed sequential constrained minimization on a set of squared Euclidean distances. We then extend this approach to robust cost functions using the alpha and beta divergences and derive flexible update rules. Our algorithms are locally stable and work well for NMF-based blind source separation (BSS) not only for the over-determined case but also for an under-determined (over-complete) case (i.e., for a system which has less sensors than sources) if data are sufficiently sparse. The NMF learning rules are extended and generalized for N-th order nonnegative tensor factorization (NTF). Moreover, these algorithms can be tuned to different noise statistics by adjusting a single parameter. Extensive experimental results confirm the accuracy and computational performance of the developed algorithms, especially, with usage of multi-layer hierarchical NMF approach [3].
Hierarchical ALS Algorithms for Nonnegative Matrix and 3D Tensor Factorization
In the paper we present new Alternating Least Squares (ALS) algorithms for Nonnegative Matrix Factorization (NMF) and their extensions to 3D Nonnegative Tensor Factorization (NTF) that are robust in the presence of noise and have many potential applications, including multi-way Blind Source Separation (BSS), multi-sensory or multi-dimensional data analysis, and nonnegative neural sparse coding. We propose to use local cost functions whose simultaneous or sequential (one by one) minimization leads to a very simple ALS algorithm which works under some sparsity constraints both for an under-determined (a system which has less sensors than sources) and overdetermined model. The extensive experimental results confirm the validity and high performance of the developed algorithms, especially with usage of the multi-layer hierarchical NMF. Extension of the proposed algorithm to multidimensional Sparse Component Analysis and Smooth Component Analysis is also proposed.
Matrix-Vector Nonnegative Tensor Factorization for Blind Unmixing of Hyperspectral Imagery
Many spectral unmixing approaches ranging from geometry, algebra to statistics have been proposed, in which nonnegative matrix factorization (NMF)-based ones form an important family. The original NMF-based unmixing algorithm loses the spectral and spatial information between mixed pixels when stacking the spectral responses of the pixels into an observed matrix. Therefore, various constrained NMF methods are developed to impose spectral structure, spatial structure, and spectral-spatial joint structure into NMF to enforce the estimated endmembers and abundances preserve these structures. Compared with matrix format, the third-order tensor is more natural to represent a hyperspectral data cube as a whole, by which the intrinsic structure of hyperspectral imagery can be losslessly retained. Extended from NMF-based methods, a matrix-vector nonnegative tensor factorization (NTF) model is proposed in this paper for spectral unmixing. Different from widely used tensor factorization models, such as canonical polyadic decomposition CPD) and Tucker decomposition, the proposed method is derived from block term decomposition, which is a combination of CPD and Tucker decomposition. This leads to a more flexible frame to model various application-dependent problems. The matrix-vector NTF decomposes a third-order tensor into the sum of several component tensors, with each component tensor being the outer product of a vector (endmember) and a matrix (corresponding abundances). From a formal perspective, this tensor decomposition is consistent with linear spectral mixture model. From an informative perspective, the structures within spatial domain, within spectral domain, and cross spectral-spatial domain are retreated interdependently. Experiments demonstrate that the proposed method has outperformed several state-of-the-art NMF-based unmixing methods.
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