Francesca Chiaromonte

发表

IWTomics: testing high‐resolution sequence‐based ‘Omics' data at multiple locations and scales

Marzia A. Cremona, Alessia Pini, Fabio Cumbo, 2018, Bioinform..

Composite Likelihood Inference in a Discrete Latent Variable Model for Two-Way “Clustering-by-Segmentation” Problems

Francesco Bartolucci, Francesca Chiaromonte, Prabhani Kuruppumullage Don, 2015, 1506.08278.

On the bias of H-scores for comparing biclusters, and how to correct it

Marzia A. Cremona, Francesca Chiaromonte, Jacopo Di Iorio, 2019, Bioinform..

The relationship between human mobility and viral transmissibility during the COVID-19 epidemics in Italy pdf

Dino Pedreschi, Giulio Rossetti, Fosca Giannotti, 2020, ArXiv.

Integration and Fixation Preferences of Human and Mouse Endogenous Retroviruses Uncovered with Functional Data Analysis

Marzia A. Cremona, Alessia Pini, Kateryna D. Makova, 2016, PLoS Comput. Biol..

Functional data analysis for computational biology

Marzia A. Cremona, Francesca Chiaromonte, Matthew Reimherr, 2019, Bioinform..

Probabilistic K-means with local alignment for clustering and motif discovery in functional data

Marzia A. Cremona, Francesca Chiaromonte, F. Chiaromonte, 2018, Journal of Computational and Graphical Statistics.

A Macaque's-Eye View of Human Insertions and Deletions: Differences in Mechanisms

Kateryna D. Makova, Francesca Chiaromonte, Erika M. Kvikstad, 2007, PLoS Comput. Biol..

Give more data, awareness and control to individual citizens, and they will help COVID-19 containment pdf

Dirk Helbing, Josep Domingo-Ferrer, Alex Pentland, 2020, Ethics and Information Technology.

An attraction–repulsion point process model for respiratory syncytial virus infections

Francesca Chiaromonte, Murali Haran, John Fricks, 2014, Biometrics.

Covariate Information Number for Feature Screening in Ultrahigh-Dimensional Supervised Problems

Runze Li, Francesca Chiaromonte, Debmalya Nandy, 2020, Journal of the American Statistical Association.

Knowledge and social relatedness shape research portfolio diversification

Fabrizio Lillo, Francesca Chiaromonte, Giorgio Tripodi, 2020, Scientific Reports.

Computational Pan-Genomics: Status, Promises and Challenges

Jan O. Korbel, Ying Zhang, Eleazar Eskin, 2016 .

Error correction and statistical analyses for intra-host comparisons of feline immunodeficiency virus diversity from high-throughput sequencing data

Yang Liu, Francesca Chiaromonte, Raunaq Malhotra, 2015, BMC Bioinformatics.

Scoring Pairwise Genomic Sequence Alignments

Francesca Chiaromonte, V. B. Yap, W. Miller, 2001, Pacific Symposium on Biocomputing.

Simultaneous feature selection and outlier detection with optimality guarantees

Giovanni Felici, Francesca Chiaromonte, Ana Kenney, 2020, Biometrics.

An Efficient Semi-smooth Newton Augmented Lagrangian Method for Elastic Net pdf

Francesca Chiaromonte, Matthew Reimherr, Tobia Boschi, 2020, ArXiv.

Computational pan-genomics: status, promises and challenges

Ying Zhang, Eleazar Eskin, Knut Reinert, 2016, bioRxiv.

Linear Contour Learning: A Method for Supervised Dimension Reduction

Hongyuan Zha, Bing Li, Francesca Chiaromonte, 2004, UAI.

Doubly Robust Feature Selection with Mean and Variance Outlier Detection and Oracle Properties

Runze Li, Francesca Chiaromonte, Marco Riani, 2021, 2106.11941.

Can you always reap what you sow? Network and functional data analysis of VC investments in health-tech companies pdf

Christian Esposito, Giulio Rossetti, Francesca Chiaromonte, 2021, COMPLEX NETWORKS.

A Robust Estimation Approach for Mean-Shift and Variance-Inflation Outliers

Francesca Chiaromonte, Marco Riani, Luca Insolia, 2021 .

Epsilon Consistent Mixup: An Adaptive Consistency-Interpolation Tradeoff pdf

Francesca Chiaromonte, Yanglan Ou, Vincent Pisztora, 2021, ArXiv.

Robust Variable Selection with Optimality Guarantees for High-Dimensional Logistic Regression

Francesca Chiaromonte, Ana Kenney, Luca Insolia, 2021, Stats.

Automated and Distributed Statistical Analysis of Economic Agent-Based Models pdf

Francesca Chiaromonte, Andrea Vandin, Francesco Lamperti, 2021, ArXiv.

Structured Ordinary Least Squares: A Sufficient Dimension Reduction approach for regressions with partitioned predictors and heterogeneous units

Francesca Chiaromonte, Yang Liu, Bing Li, 2017, Biometrics.

Using Statistics to Shed Light on the Dynamics of the Human Genome: A Review

Kateryna D. Makova, Francesca Chiaromonte, K. Makova, 2015 .

Non-B DNA affects polymerization speed and error rate in sequencers and living cells

Marzia A. Cremona, Kateryna D. Makova, Francesca Chiaromonte, 2017 .

Strong and weak male mutation bias at different sites in the primate genomes: insights from the human-chimpanzee comparison.

Francesca Chiaromonte, Svitlana Tyekucheva, Kateryna D Makova, 2006, Molecular biology and evolution.

ESPERR: learning strong and weak signals in genomic sequence alignments to identify functional elements.

Francesca Chiaromonte, Webb Miller, Ross C Hardison, 2006, Genome research.

Insertions and deletions are male biased too: a whole-genome analysis in rodents.

Francesca Chiaromonte, Kateryna D Makova, Shan Yang, 2004, Genome research.

MIP-BOOST: Efficient and Effective L 0 Feature Selection for Linear Regression

Giovanni Felici, Francesca Chiaromonte, Ana Kenney, 2018, J. Comput. Graph. Stat..

Genomic landscape of human, bat, and ex vivo DNA transposon integrations.

Francesca Chiaromonte, Cédric Feschotte, Kateryna D Makova, 2014, Molecular biology and evolution.

ENVELOPE MODELS FOR PARSIMONIOUS AND EFFICIENT MULTIVARIATE LINEAR REGRESSION

Bing Li, Francesca Chiaromonte, R. Cook, 2010 .

Complete Khoisan and Bantu genomes from southern

Anton Nekrutenko, Kateryna D. Makova, Francesca Chiaromonte, 2010 .

Support vector machines categorize the scaling of human grip configurations

Francesca Chiaromonte, Paola Cesari, Karl M Newell, 2007, Behavior research methods.

Patterns of insertions and their covariation with substitutions in the rat, mouse, and human genomes.

David Haussler, Francesca Chiaromonte, Webb Miller, 2004, Genome research.

Maternal age effect and severe germ-line bottleneck in the inheritance of human mitochondrial DNA

Anton Nekrutenko, Daniel Blankenberg, Francesca Chiaromonte, 2014, Proceedings of the National Academy of Sciences.

Covariation in frequencies of substitution, deletion, transposition, and recombination during eutherian evolution.

David Haussler, Francesca Chiaromonte, Mark Diekhans, 2003, Genome research.

Ride the wavelet: A multiscale analysis of genomic contexts flanking small insertions and deletions.

Kateryna D. Makova, Francesca Chiaromonte, K. Makova, 2009, Genome research.

Augmenting the bootstrap to analyze high dimensional genomic data

Francesca Chiaromonte, Svitlana Tyekucheva, S. Tyekucheva, 2008 .

Dimension reduction for the conditional mean in regressions with categorical predictors

Bing Li, Francesca Chiaromonte, R. Dennis Cook, 2003 .

Regulatory potential scores from genome-wide three-way alignments of human, mouse, and rat.

Francesca Chiaromonte, Webb Miller, Laura Elnitski, 2004, Genome research.

Qualitative network models and genome-wide expression data define carbon/nitrogen-responsive molecular machines in Arabidopsis

Francesca Chiaromonte, Rodrigo A Gutiérrez, Gloria M Coruzzi, 2007, Genome Biology.

What Is a Microsatellite: A Computational and Experimental Definition Based upon Repeat Mutational Behavior at A/T and GT/AC Repeats

Kateryna D. Makova, Francesca Chiaromonte, K. Makova, 2010, Genome biology and evolution.

Mixture-Based Path Clustering for Synthesis of ECMWF Ensemble Forecasts of Tropical Cyclone Evolution

Francesca Chiaromonte, Prabhani Kuruppumullage Don, Alex M. Kowaleski, 2016 .

Evaluation of regulatory potential and conservation scores for detecting cis-regulatory modules in aligned mammalian genome sequences.

Francesca Chiaromonte, Webb Miller, Laura Elnitski, 2005, Genome research.

Innovative Learning and Institutions in the Process of Development: On the Microfoundation of Growth Regimes

Francesca Chiaromonte, Luigi Orsenigo, Giovanni Dosi, 1993 .

Primary sequence and epigenetic determinants of in vivo occupancy of genomic DNA by GATA1

Francesca Chiaromonte, Ying Zhang, Ross C. Hardison, 2009, Nucleic acids research.

Erythroid GATA 1 function revealed by genome-wide analysis of transcription factor occupancy , histone modifications , and mRNA expression

Francesca Chiaromonte, Webb Miller, Ying Zhang, 2009 .

Gene length and proximity to neighbors affect genome-wide expression levels.

Francesca Chiaromonte, Webb Miller, W. Miller, 2003, Genome research.

Rescuing Alu: Recovery of New Inserts Shows LINE-1 Preserves Alu Activity through A-Tail Expansion

Kateryna D. Makova, Francesca Chiaromonte, Dale J. Hedges, 2012, PLoS genetics.

A genome-wide analysis of common fragile sites: What features determine chromosomal instability in the human genome?

Francesca Chiaromonte, Kateryna D Makova, Arkarachai Fungtammasan, 2012, Genome research.

A general theory for nonlinear sufficient dimension reduction: Formulation and estimation

Bing Li, Francesca Chiaromonte, Kuang-Yao Lee, 2013, 1304.0580.

Segmenting the human genome based on states of neutral genetic divergence

Francesca Chiaromonte, Guruprasad Ananda, Kateryna D Makova, 2013, Proceedings of the National Academy of Sciences.

Dimension reduction in regression without matrix inversion

Bing Li, Francesca Chiaromonte, R. Dennis Cook, 2007 .

Experimental validation of predicted mammalian erythroid cis-regulatory modules.

Francesca Chiaromonte, Webb Miller, Ying Zhang, 2006, Genome research.

Transcriptional enhancement by GATA1-occupied DNA segments is strongly associated with evolutionary constraint on the binding site motif.

Francesca Chiaromonte, Webb Miller, Ying Zhang, 2008, Genome research.

Long-read sequencing technology indicates genome-wide effects of non-B DNA on polymerization speed and error rate

Marzia A. Cremona, Francesca Chiaromonte, Eduard Kejnovsky, 2018, bioRxiv.

Distinct Mutational Behaviors Differentiate Short Tandem Repeats from Microsatellites in the Human Genome

Kateryna D. Makova, Francesca Chiaromonte, Guruprasad Ananda, 2012, Genome biology and evolution.

Heterogeneity, competition, and macroeconomic dynamics

Francesca Chiaromonte, Giovanni Dosi, G. Dosi, 1993 .

Child Weight Gain Trajectories Linked To Oral Microbiota Composition

Anton Nekrutenko, Daniel Blankenberg, Francesca Chiaromonte, 2018, Scientific Reports.