Arun Siddharth Konagurthu

发表

Progressive Multiple Alignment Using Sequence Triplet Optimizations and Three-residue Exchange Costs

Peter J. Stuckey, Arun Siddharth Konagurthu, James C. Whisstock, 2004, J. Bioinform. Comput. Biol..

Design of an Efficient Out-of-Core Read Alignment Algorithm

Arun Siddharth Konagurthu, Justin Zobel, Thomas C. Conway, 2010, WABI.

Super: a web server to rapidly screen superposable oligopeptide fragments from the protein data bank

Arun Siddharth Konagurthu, Maria Garcia de la Banda, James H. Collier, 2012, Nucleic Acids Res..

On the origin of distribution patterns of motifs in biological networks

Arun Siddharth Konagurthu, Arthur M. Lesk, A. Konagurthu, 2008, BMC Systems Biology.

Structural search and retrieval using a tableau representation of protein folding patterns

Peter J. Stuckey, Arun Siddharth Konagurthu, Arthur M. Lesk, 2008, Bioinform..

On Representing Protein Folding Patterns Using Non-Linear Parametric Curves

Arun Siddharth Konagurthu, Maria Garcia de la Banda, Parthan Kasarapu, 2014, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

The Bits Between Proteins

Lloyd Allison, Arun Siddharth Konagurthu, Dinithi Sumanaweera, 2018, 2018 Data Compression Conference.

Minimum message length inference of secondary structure from protein coordinate data

Lloyd Allison, Arun Siddharth Konagurthu, Arthur M. Lesk, 2012, Bioinform..

Optimal Sum-of-Pairs Multiple Sequence Alignment Using Incremental Carrillo and Lipman Bounds

Peter J. Stuckey, Arun Siddharth Konagurthu, 2006, J. Comput. Biol..

Piecewise linear approximation of protein structures using the principle of minimum message length

Peter J. Stuckey, Lloyd Allison, Arun Siddharth Konagurthu, 2011, Bioinform..

EGM: encapsulated gene-by-gene matching to identify gene orthologs and homologous segments in genomes

Geoffrey I. Webb, Jiangning Song, Arun Siddharth Konagurthu, 2010, Bioinform..

A fast indexing approach for protein structure comparison

James Bailey, Kotagiri Ramamohanarao, Lei Zhang, 2010, BMC Bioinformatics.

Statistical Compression of Protein Folding Patterns for Inference of Recurrent Substructural Themes

David Abramson, Peter J. Stuckey, Lloyd Allison, 2017, 2017 Data Compression Conference (DCC).

A new statistical framework to assess structural alignment quality using information compression

Lloyd Allison, Arun Siddharth Konagurthu, Maria Garcia de la Banda, 2014, Bioinform..

Statistical Inference of Protein "LEGO Bricks"

David Abramson, Peter J. Stuckey, Lloyd Allison, 2013, 2013 IEEE 13th International Conference on Data Mining.

On Sufficient Statistics of Least-Squares Superposition of Vector Sets

Lloyd Allison, Arun Siddharth Konagurthu, James H. Collier, 2015, J. Comput. Biol..

On Sufficient Statistics of Least-Squares Superposition of Vector Sets

Lloyd Allison, Arun Siddharth Konagurthu, James H. Collier, 2014, RECOMB.

On Universal Codes for Integers: Wallace Tree, Elias Omega and Beyond

Lloyd Allison, Arun Siddharth Konagurthu, Daniel F. Schmidt, 2021, 2021 Data Compression Conference (DCC).

On identifying statistical redundancy at the level of amino acid subsequences

Lloyd Allison, Arun Siddharth Konagurthu, Maria Garcia de la Banda, 2021, 2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).