Towards blueprints for network architecture, biophysical dynamics and signal transduction

We review mathematical aspects of biophysical dynamics, signal transduction and network architecture that have been used to uncover functionally significant relations between the dynamics of single neurons and the networks they compose. We focus on examples that combine insights from these three areas to expand our understanding of systems neuroscience. These range from single neuron coding to models of decision making and electrosensory discrimination by networks and populations and also coincidence detection in pairs of dendrites and dynamics of large networks of excitable dendritic spines. We conclude by describing some of the challenges that lie ahead as the applied mathematics community seeks to provide the tools which will ultimately underpin systems neuroscience.

[1]  Bruce W. Knight,et al.  Dynamics of Encoding in Neuron Populations: Some General Mathematical Features , 2000, Neural Computation.

[2]  Xiao-Jing Wang,et al.  A Recurrent Network Mechanism of Time Integration in Perceptual Decisions , 2006, The Journal of Neuroscience.

[3]  Jonathan D. Cohen,et al.  The physics of optimal decision making: a formal analysis of models of performance in two-alternative forced-choice tasks. , 2006, Psychological review.

[4]  John Rinzel,et al.  A Formal Classification of Bursting Mechanisms in Excitable Systems , 1987 .

[5]  Philip Holmes,et al.  Simple Neural Networks that Optimize Decisions , 2005, Int. J. Bifurc. Chaos.

[6]  Eric Shea-Brown,et al.  On the Phase Reduction and Response Dynamics of Neural Oscillator Populations , 2004, Neural Computation.

[7]  P. Bressloff,et al.  Bursting: The genesis of rhythm in the nervous system , 2005 .

[8]  Sen Song,et al.  Highly Nonrandom Features of Synaptic Connectivity in Local Cortical Circuits , 2005, PLoS biology.

[9]  Daniel D. Lee,et al.  Stability of the Memory of Eye Position in a Recurrent Network of Conductance-Based Model Neurons , 2000, Neuron.

[10]  William Bialek,et al.  Spikes: Exploring the Neural Code , 1996 .

[11]  J Rinzel,et al.  Propagation of dendritic spikes mediated by excitable spines: a continuum theory. , 1991, Journal of neurophysiology.

[12]  Alexander Borst,et al.  Information theory and neural coding , 1999, Nature Neuroscience.

[13]  Eero P. Simoncelli,et al.  Natural image statistics and neural representation. , 2001, Annual review of neuroscience.

[14]  John Rinzel,et al.  Intrinsic and network rhythmogenesis in a reduced traub model for CA3 neurons , 2004, Journal of Computational Neuroscience.

[15]  Brent Doiron,et al.  Oscillatory activity in electrosensory neurons increases with the spatial correlation of the stochastic input stimulus. , 2004, Physical review letters.

[16]  Kazuyuki Aihara,et al.  Coding of Temporally Varying Signals in Networks of Spiking Neurons with Global Delayed Feedback , 2005, Neural Computation.

[17]  William Bialek,et al.  Adaptive Rescaling Maximizes Information Transmission , 2000, Neuron.

[18]  Martin Golubitsky,et al.  An unfolding theory approach to bursting in fast–slow systems , 2001 .

[19]  M. London,et al.  Dendritic computation. , 2005, Annual review of neuroscience.

[20]  Albert-László Barabási,et al.  Statistical mechanics of complex networks , 2001, ArXiv.

[21]  J. M. Sancho,et al.  Noise in spatially extended systems , 1999 .

[22]  A. Koulakov,et al.  Model for a robust neural integrator , 2002, Nature Neuroscience.

[23]  Miles A. Whittington,et al.  Low-Dimensional Maps Encoding Dynamics in Entorhinal Cortex and Hippocampus , 2006, Neural Computation.

[24]  G. Ermentrout,et al.  Analysis of neural excitability and oscillations , 1989 .

[25]  R. Guillery Histology of the Nervous System by Santiago Ramón y Cajal. Translated into English from the French edition by Neely Swanson and Larry W. Swanson, Oxford University Press, 1995. $195.00 (1672 pp) ISBN 0 19 507 4017 , 1996, Trends in Neurosciences.

[26]  N. Lesica,et al.  Encoding of Natural Scene Movies by Tonic and Burst Spikes in the Lateral Geniculate Nucleus , 2004, The Journal of Neuroscience.

[27]  H S Seung,et al.  How the brain keeps the eyes still. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[28]  Carlo R. Laing,et al.  On the application of “equation-free modelling” to neural systems , 2006, Journal of Computational Neuroscience.

[29]  S. Sherman,et al.  Fourier analysis of sinusoidally driven thalamocortical relay neurons and a minimal integrate-and-fire-or-burst model. , 2000, Journal of neurophysiology.

[30]  R. Traub,et al.  A model of a CA3 hippocampal pyramidal neuron incorporating voltage-clamp data on intrinsic conductances. , 1991, Journal of neurophysiology.

[31]  A. Hodgkin,et al.  A quantitative description of membrane current and its application to conduction and excitation in nerve , 1952, The Journal of physiology.

[32]  J. Gold,et al.  Banburismus and the Brain Decoding the Relationship between Sensory Stimuli, Decisions, and Reward , 2002, Neuron.

[33]  Eugene M. Izhikevich,et al.  Neural excitability, Spiking and bursting , 2000, Int. J. Bifurc. Chaos.

[34]  Marcus Pivato,et al.  Symmetry Groupoids and Patterns of Synchrony in Coupled Cell Networks , 2003, SIAM J. Appl. Dyn. Syst..

[35]  Brent Doiron,et al.  Theory of oscillatory firing induced by spatially correlated noise and delayed inhibitory feedback. , 2005, Physical review. E, Statistical, nonlinear, and soft matter physics.

[36]  Ian Stewart,et al.  Patterns of Synchrony in Coupled Cell Networks with Multiple Arrows , 2005, SIAM J. Appl. Dyn. Syst..

[37]  James L. McClelland,et al.  The time course of perceptual choice: the leaky, competing accumulator model. , 2001, Psychological review.

[38]  André Longtin,et al.  Delayed excitatory and inhibitory feedback shape neural information transmission. , 2005, Physical review. E, Statistical, nonlinear, and soft matter physics.

[39]  Henry J. Alitto,et al.  Corticothalamic feedback and sensory processing , 2003, Current Opinion in Neurobiology.

[40]  G. Ermentrout,et al.  Frequency Plateaus in a Chain of Weakly Coupled Oscillators, I. , 1984 .

[41]  W. Pitts,et al.  A Logical Calculus of the Ideas Immanent in Nervous Activity (1943) , 2021, Ideas That Created the Future.

[42]  Brent Doiron,et al.  Inhibitory feedback required for network oscillatory responses to communication but not prey stimuli , 2003, Nature.

[43]  P. Bressloff,et al.  Saltatory waves in the spike-diffuse-spike model of active dendritic spines. , 2003, Physical review letters.

[44]  N. Spruston,et al.  Conditional dendritic spike propagation following distal synaptic activation of hippocampal CA1 pyramidal neurons , 2005, Nature Neuroscience.

[45]  Karlene Davis,et al.  Challenges for the future. , 2005, RCM midwives : the official journal of the Royal College of Midwives.

[46]  J. Cowan,et al.  A mathematical theory of the functional dynamics of cortical and thalamic nervous tissue , 1973, Kybernetik.

[47]  W S McCulloch,et al.  A logical calculus of the ideas immanent in nervous activity , 1990, The Philosophy of Artificial Intelligence.

[48]  J. Rinzel,et al.  The role of dendrites in auditory coincidence detection , 1998, Nature.

[49]  Eric Shea-Brown,et al.  Winding Numbers and Average Frequencies in Phase Oscillator Networks , 2006, J. Nonlinear Sci..