REDCRAFT: a tool for simultaneous characterization of protein backbone structure and motion from RDC data.
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Homayoun Valafar | James H Prestegard | J. Prestegard | F. Tian | Michael Bryson | H. Valafar | Michael Bryson | Fang Tian | James H. Prestegard | Fang Tian
[1] M. Federson,et al. Periodicity. , 2019, Medical critic and psychological journal.
[2] Yun-Xing Wang,et al. Periodicity, planarity, and pixel (3P): a program using the intrinsic residual dipolar coupling periodicity-to-peptide plane correlation and phi/psi angles to derive protein backbone structures. , 2007, Journal of magnetic resonance.
[3] Marc S. Cortese,et al. Rational drug design via intrinsically disordered protein. , 2006, Trends in biotechnology.
[4] W. R. Howard. The Nature of Mathematical Modeling , 2006 .
[5] M. Blackledge. Recent progress in the study of biomolecular structure and dynamics in solution from residual dipolar couplings , 2005 .
[6] Karen N. Allen,et al. Structural origin of the high affinity of a chemically evolved lanthanide-binding peptide. , 2004, Angewandte Chemie.
[7] An-Suei Yang,et al. Protein backbone angle prediction with machine learning approaches , 2004, Bioinform..
[8] Bruce Randall Donald,et al. Exact Solutions for Internuclear Vectors and Backbone Dihedral Angles from NH Residual Dipolar Couplings in Two Media, and their Application in a Systematic Search Algorithm for Determining Protein Backbone Structure , 2004, Journal of biomolecular NMR.
[9] Mukesh Sharma,et al. Simultaneous assignment and structure determination of protein backbones by using NMR dipolar couplings. , 2004, Angewandte Chemie.
[10] M. DePristo,et al. Heterogeneity and inaccuracy in protein structures solved by X-ray crystallography. , 2004, Structure.
[11] Homayoun Valafar,et al. REDCAT: a residual dipolar coupling analysis tool. , 2004, Journal of magnetic resonance.
[12] Ivano Bertini,et al. 15N-1H Residual dipolar coupling analysis of native and alkaline-K79A Saccharomyces cerevisiae cytochrome c. , 2003, Biophysical journal.
[13] Ivano Bertini,et al. The magnetic properties of myoglobin as studied by NMR spectroscopy. , 2003, Chemistry.
[14] Rafael Brüschweiler,et al. Principal component method for assessing structural heterogeneity across multiple alignment media , 2002, Journal of biomolecular NMR.
[15] J. R. Tolman. A novel approach to the retrieval of structural and dynamic information from residual dipolar couplings using several oriented media in biomolecular NMR spectroscopy. , 2002, Journal of the American Chemical Society.
[16] D. Baker,et al. De novo determination of protein backbone structure from residual dipolar couplings using Rosetta. , 2002, Journal of the American Chemical Society.
[17] G Marius Clore,et al. Using conjoined rigid body/torsion angle simulated annealing to determine the relative orientation of covalently linked protein domains from dipolar couplings. , 2002, Journal of magnetic resonance.
[18] Manuel Martin-Pastor,et al. Conformational studies of Lewis X and Lewis A trisaccharides using NMR residual dipolar couplings. , 2002, Biopolymers.
[19] Nico Tjandra,et al. NMR dipolar couplings for the structure determination of biopolymers in solution , 2002 .
[20] R. Levy,et al. Protein backbone structure determination using only residual dipolar couplings from one ordering medium , 2001, Journal of biomolecular NMR.
[21] J H Prestegard,et al. A dipolar coupling based strategy for simultaneous resonance assignment and structure determination of protein backbones. , 2001, Journal of the American Chemical Society.
[22] J R Tolman,et al. Dipolar couplings as a probe of molecular dynamics and structure in solution. , 2001, Current opinion in structural biology.
[23] J H Prestegard,et al. Nuclear magnetic resonance in the era of structural genomics. , 2001, Biochemistry.
[24] J. Hus,et al. A novel interactive tool for rigid-body modeling of multi-domain macromolecules using residual dipolar couplings , 2001, Journal of biomolecular NMR.
[25] J H Prestegard,et al. Structural and dynamic analysis of residual dipolar coupling data for proteins. , 2001, Journal of the American Chemical Society.
[26] J. Hus,et al. Determination of protein backbone structure using only residual dipolar couplings. , 2001, Journal of the American Chemical Society.
[27] J H Prestegard,et al. Rapid determination of protein folds using residual dipolar couplings. , 2000, Journal of molecular biology.
[28] J H Prestegard,et al. NMR structures of biomolecules using field oriented media and residual dipolar couplings , 2000, Quarterly Reviews of Biophysics.
[29] Annaleen Vermeulen,et al. Determining DNA Global Structure and DNA Bending by Application of NMR Residual Dipolar Couplings , 2000 .
[30] J. Richardson,et al. The penultimate rotamer library , 2000, Proteins.
[31] Ad Bax,et al. The NMR Structure of a DNA Dodecamer in an Aqueous Dilute Liquid Crystalline Phase , 2000 .
[32] J H Prestegard,et al. Variation of molecular alignment as a means of resolving orientational ambiguities in protein structures from dipolar couplings. , 2000, Journal of magnetic resonance.
[33] Ad Bax,et al. Protein Structure Determination Using Molecular Fragment Replacement and NMR Dipolar Couplings , 2000 .
[34] J H Prestegard,et al. Order matrix analysis of residual dipolar couplings using singular value decomposition. , 1999, Journal of magnetic resonance.
[35] A. Bax,et al. Protein backbone angle restraints from searching a database for chemical shift and sequence homology , 1999, Journal of biomolecular NMR.
[36] Neil Gershenfeld,et al. The nature of mathematical modeling , 1998 .
[37] Ad Bax,et al. Determination of Relative N−HN, N−C‘, Cα−C‘, and Cα−Hα Effective Bond Lengths in a Protein by NMR in a Dilute Liquid Crystalline Phase , 1998 .
[38] A M Gronenborn,et al. A robust method for determining the magnitude of the fully asymmetric alignment tensor of oriented macromolecules in the absence of structural information. , 1998, Journal of magnetic resonance.
[39] Mark J Howard,et al. Protein NMR spectroscopy , 1998, Current Biology.
[40] A. Bax,et al. Direct measurement of distances and angles in biomolecules by NMR in a dilute liquid crystalline medium. , 1997, Science.
[41] Ad Bax,et al. Magnetic Field Dependence of Nitrogen−Proton J Splittings in 15N-Enriched Human Ubiquitin Resulting from Relaxation Interference and Residual Dipolar Coupling , 1996 .
[42] J. Cavanagh. Protein NMR Spectroscopy: Principles and Practice , 1995 .
[43] J H Prestegard,et al. Nuclear magnetic dipole interactions in field-oriented proteins: information for structure determination in solution. , 1995, Proceedings of the National Academy of Sciences of the United States of America.
[44] M. Leone,et al. Structural and dynamic properties of the heme pocket in myoglobin probed by optical spectroscopy , 1988, Biopolymers.
[45] William H. Press,et al. Numerical recipes in C. The art of scientific computing , 1987 .
[46] W. Caughey,et al. Dynamic protein structures. Effects of pH on conformer stabilities at the ligand-binding site of bovine heart myoglobin carbonyl. , 1982, The Journal of biological chemistry.
[47] A. Redfield,et al. Nuclear Overhauser effect study and assignment of D stem and reverse-Hoogsteen base pair proton resonances in yeast tRNAAsp. , 1981, Nucleic acids research.
[48] G. Englert,et al. High-Resolution Nuclear Magnetic Resonance Spectra of Orientated Molecules , 1963 .
[49] Martin Karplus,et al. Vicinal Proton Coupling in Nuclear Magnetic Resonance , 1963 .
[50] J H Prestegard,et al. Determination of protein backbone structures from residual dipolar couplings. , 2005, Methods in enzymology.
[51] J. Prestegard,et al. Backbone solution structures of proteins using residual dipolar couplings: application to a novel structural genomics target , 2004, Journal of Structural and Functional Genomics.
[52] Charles D Schwieters,et al. The Xplor-NIH NMR molecular structure determination package. , 2003, Journal of magnetic resonance.
[53] R. Service,et al. Structural genomics. Tapping DNA for structures produces a trickle. , 2002, Science.
[54] A. Bax,et al. Dipolar couplings in macromolecular structure determination. , 2001, Methods in enzymology.
[55] Christopher J. Oldfield,et al. Intrinsically disordered protein. , 2001, Journal of molecular graphics & modelling.
[56] J H Prestegard,et al. Molecular symmetry as an aid to geometry determination in ligand protein complexes. , 2000, Journal of magnetic resonance.
[57] A. Pardi,et al. Incorporating residual dipolar couplings into the NMR solution structure determination of nucleic acids , 1999, Biopolymers.