A visualization pipeline for large-scale tractography data

We present a novel methodology for clustering and visualizing large-scale tractography data sets. Tractography data sets contain hundreds of millions of line segments, making visualizing and understanding this data very difficult. Our method reduces and simplifies this data to create coherent groupings and visualizations. Our input is a collection of tracts, from which we derive metrics and perform clustering. Using the clustered data, we create a three-dimensional histogram that contains the counts of the number of tracts that intersect each bin. With these new data sets, we can perform standard visualization techniques. Our contribution is the visualization pipeline itself, as well as a study and evaluation schema. Our study utilizes our evaluation schema to identify the best and most influential clustering metrics, and an optimal number of clusters under varying user requirements.

[1]  Maxime Descoteaux,et al.  Robust clustering of massive tractography datasets , 2011, NeuroImage.

[2]  P. Basser Diffusion MRI: From Quantitative Measurement to In vivo Neuroanatomy , 2009 .

[3]  Steve M. Legensky Interactive investigation of fluid mechanics data sets , 1990, Proceedings of the First IEEE Conference on Visualization: Visualization `90.

[4]  Olaf Sporns,et al.  Complex network measures of brain connectivity: Uses and interpretations , 2010, NeuroImage.

[5]  Simon K. Warfield,et al.  Toward an accurate multi-fiber assessment strategy for clinical practice , 2011, 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

[6]  Carl-Fredrik Westin,et al.  QUANTITATIVE EXAMINATION OF A NOVEL CLUSTERING METHOD USING MAGNETIC RESONANCE DIFFUSION TENSOR TRACTOGRAPHY , 2008 .

[7]  Timothy Edward John Behrens,et al.  A Bayesian framework for global tractography , 2007, NeuroImage.

[8]  Flavio Dell'Acqua,et al.  Structural human brain networks: hot topics in diffusion tractography. , 2012, Current opinion in neurology.

[9]  J. Reichenbach,et al.  Atlas-Guided Cluster Analysis of Large Tractography Datasets , 2013, PloS one.

[10]  Jan K. Buitelaar,et al.  Partition-based mass clustering of tractography streamlines , 2011, NeuroImage.

[11]  Hank Childs Parallel Visualization Frameworks , 2012, High Performance Visualization.

[12]  Fan Zhang,et al.  In Situ Processing , 2012, High Performance Visualization.

[13]  Nicholas Ayache,et al.  Improved Detection Sensitivity in Functional MRI Data Using a Brain Parcelling Technique , 2002, MICCAI.

[14]  C. Westin,et al.  A method for clustering white matter fiber tracts. , 2006, AJNR. American journal of neuroradiology.

[15]  Qing He,et al.  Parallel K-Means Clustering Based on MapReduce , 2009, CloudCom.

[16]  R R Edelman,et al.  Magnetic resonance imaging (1). , 1993, The New England journal of medicine.

[17]  Vid Petrovic,et al.  Visualizing Whole-Brain DTI Tractography with GPU-based Tuboids and LoD Management , 2007, IEEE Transactions on Visualization and Computer Graphics.

[18]  Anna Vilanova,et al.  Evaluation of fiber clustering methods for diffusion tensor imaging , 2005, VIS 05. IEEE Visualization, 2005..

[19]  Christophe Lenglet,et al.  Estimating Orientation Distribution Functions with Probability Density Constraints and Spatial Regularity , 2009, MICCAI.

[20]  A. Connelly,et al.  Quantification of the shape of fiber tracts , 2006, Magnetic resonance in medicine.

[21]  P. V. van Zijl,et al.  Three‐dimensional tracking of axonal projections in the brain by magnetic resonance imaging , 1999, Annals of neurology.

[22]  J. Pekar,et al.  MR color mapping of myelin fiber orientation. , 1991, Journal of computer assisted tomography.

[23]  Hank Childs,et al.  VisIt: An End-User Tool for Visualizing and Analyzing Very Large Data , 2011 .

[24]  Rachid Deriche,et al.  Deterministic and Probabilistic Tractography Based on Complex Fibre Orientation Distributions , 2009, IEEE Transactions on Medical Imaging.

[25]  R. Kikinis,et al.  Interactive Diffusion Tensor Tractography Visualization for Neurosurgical Planning , 2011, Neurosurgery.

[26]  Carl-Fredrik Westin,et al.  Sparse Multi-Shell Diffusion Imaging , 2011, MICCAI.

[27]  Tobias Isenberg,et al.  Illustrative Rendering of Dense Line Data , 2010 .

[28]  Sergei Vassilvitskii,et al.  k-means++: the advantages of careful seeding , 2007, SODA '07.

[29]  V. Wedeen,et al.  Diffusion MRI of Complex Neural Architecture , 2003, Neuron.

[30]  Kelly P. Gaither,et al.  A Distributed-Memory Algorithm for Connected Components Labeling of Simulation Data , 2015, Topological and Statistical Methods for Complex Data, Tackling Large-Scale, High-Dimensional, and Multivariate Data Spaces.

[31]  Carl-Fredrik Westin,et al.  Clustering Fiber Traces Using Normalized Cuts , 2004, MICCAI.