PDBsum: Structural summaries of PDB entries
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Radka Svobodová Vařeková | Janet M Thornton | Radka Svobodová Vareková | Lukáš Pravda | Roman A Laskowski | Jagoda Jabłońska | J. Thornton | R. Laskowski | R. Vareková | L. Pravda | J. Jabłońska
[1] David S. Wishart,et al. DrugBank 4.0: shedding new light on drug metabolism , 2013, Nucleic Acids Res..
[2] T. N. Bhat,et al. The Protein Data Bank , 2000, Nucleic Acids Res..
[3] A G Murzin,et al. SCOP: a structural classification of proteins database for the investigation of sequences and structures. , 1995, Journal of molecular biology.
[4] Cathy H. Wu,et al. UniProt: the Universal Protein knowledgebase , 2004, Nucleic Acids Res..
[5] David A. Lee,et al. CATH: comprehensive structural and functional annotations for genome sequences , 2014, Nucleic Acids Res..
[6] Alexey G. Murzin,et al. SCOP2 prototype: a new approach to protein structure mining , 2014, Nucleic Acids Res..
[7] M C Peitsch,et al. The Swiss-3DImage collection and PDB-Browser on the World-Wide Web. , 1995, Trends in biochemical sciences.
[8] E G Hutchinson,et al. HERA—A program to draw schematic diagrams of protein secondary structures , 1990, Proteins.
[9] M. Swindells,et al. Protein clefts in molecular recognition and function. , 1996, Protein science : a publication of the Protein Society.
[10] W. Pearson. Rapid and sensitive sequence comparison with FASTP and FASTA. , 1990, Methods in enzymology.
[11] R A Sayle,et al. RASMOL: biomolecular graphics for all. , 1995, Trends in biochemical sciences.
[12] Janet M. Thornton,et al. PDBsum more: new summaries and analyses of the known 3D structures of proteins and nucleic acids , 2004, Nucleic Acids Res..
[13] G J Williams,et al. The Protein Data Bank: a computer-based archival file for macromolecular structures. , 1978, Archives of biochemistry and biophysics.
[14] Roman A. Laskowski,et al. PDBsum: summaries and analyses of PDB structures , 2001, Nucleic Acids Res..
[15] Asif U. Tamuri,et al. ArchSchema: a tool for interactive graphing of related Pfam domain architectures , 2010, Bioinform..
[16] David S. Goodsell,et al. The RCSB protein data bank: integrative view of protein, gene and 3D structural information , 2016, Nucleic Acids Res..
[17] Christoph Gille,et al. STRAP: editor for STRuctural Alignments of Proteins , 2001, Bioinform..
[18] Jürgen Sühnel,et al. Image library of biological macromolecules , 1996, Comput. Appl. Biosci..
[19] Roman A. Laskowski,et al. PDBsum new things , 2008, Nucleic Acids Res..
[20] Radka Svobodová Vareková,et al. MotiveValidator: interactive web-based validation of ligand and residue structure in biomolecular complexes , 2014, Nucleic Acids Res..
[21] David C. Jones,et al. CATH--a hierarchic classification of protein domain structures. , 1997, Structure.
[22] J. Thornton,et al. PROMOTIF—A program to identify and analyze structural motifs in proteins , 1996, Protein science : a publication of the Protein Society.
[23] Robert D. Finn,et al. The Pfam protein families database: towards a more sustainable future , 2015, Nucleic Acids Res..
[24] Joel L Sussman,et al. PDBBrowse — a graphics interface to the Brookhaven Protein Data Bank , 1995, Nature.
[25] Haruki Nakamura,et al. The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data , 2006, Nucleic Acids Res..
[26] Angel Herráez,et al. Biomolecules in the computer: Jmol to the rescue , 2006, Biochemistry and molecular biology education : a bimonthly publication of the International Union of Biochemistry and Molecular Biology.
[27] Maria Jesus Martin,et al. SIFTS: Structure Integration with Function, Taxonomy and Sequences resource , 2012, Nucleic Acids Res..
[28] Radka Svobodová Vareková,et al. ValidatorDB: database of up-to-date validation results for ligands and non-standard residues from the Protein Data Bank , 2014, Nucleic Acids Res..
[29] M. L. Jones,et al. PDBsum: a Web-based database of summaries and analyses of all PDB structures. , 1997, Trends in biochemical sciences.
[30] J. Thornton,et al. Satisfying hydrogen bonding potential in proteins. , 1994, Journal of molecular biology.
[31] Janet M. Thornton,et al. ProFunc: a server for predicting protein function from 3D structure , 2005, Nucleic Acids Res..
[32] Abhik Mukhopadhyay,et al. PDBe: improved accessibility of macromolecular structure data from PDB and EMDB , 2015, Nucleic Acids Res..
[33] R. Laskowski. SURFNET: a program for visualizing molecular surfaces, cavities, and intermolecular interactions. , 1995, Journal of molecular graphics.
[34] J. Thornton,et al. PROCHECK: a program to check the stereochemical quality of protein structures , 1993 .
[35] Minoru Kanehisa,et al. KEGG: new perspectives on genomes, pathways, diseases and drugs , 2016, Nucleic Acids Res..
[36] J M Thornton,et al. Sequences annotated by structure: a tool to facilitate the use of structural information in sequence analysis. , 1998, Protein engineering.
[37] W. Delano. The PyMOL Molecular Graphics System , 2002 .
[38] J. Thornton,et al. NUCPLOT: a program to generate schematic diagrams of protein-nucleic acid interactions. , 1997, Nucleic acids research.
[39] Karel Berka,et al. PDBsum additions , 2013, Nucleic Acids Res..
[40] G J Williams,et al. The Protein Data Bank: a computer-based archival file for macromolecular structures. , 1977, Journal of molecular biology.
[41] Nicholas B Rego,et al. 3Dmol.js: molecular visualization with WebGL , 2014, Bioinform..
[42] Karel Berka,et al. MOLE 2.0: advanced approach for analysis of biomacromolecular channels , 2013, Journal of Cheminformatics.
[43] Steven C. Almo,et al. A novel bifunctional transcriptional regulator of riboflavin metabolism in Archaea , 2017, Nucleic acids research.
[44] J M Thornton,et al. LIGPLOT: a program to generate schematic diagrams of protein-ligand interactions. , 1995, Protein engineering.