Cancer systems biology in the genome sequencing era: part 1, dissecting and modeling of tumor clones and their networks.
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Edwin Wang | Jinfeng Zou | Mark Trifiro | Miltiadis Paliouras | E. Wang | M. Paliouras | Jinfeng Zou | Naif Zaman | M. Trifiro | Naif Zaman | Lenore K Beitel | L. Beitel
[1] Edwin Wang,et al. Understanding genomic alterations in cancer genomes using an integrative network approach. , 2013, Cancer letters.
[2] B. Vogelstein,et al. Clonal analysis of human colorectal tumors. , 1987, Science.
[3] E. Schadt,et al. Characterizing the role of miRNAs within gene regulatory networks using integrative genomics techniques , 2011, Molecular systems biology.
[4] Lincoln Stein,et al. Reactome: a database of reactions, pathways and biological processes , 2010, Nucleic Acids Res..
[5] Ji Luo,et al. Cancer Proliferation Gene Discovery Through Functional Genomics , 2008, Science.
[6] Edwin Wang,et al. Dynamic rewiring of the androgen receptor protein interaction network correlates with prostate cancer clinical outcomes. , 2011, Integrative biology : quantitative biosciences from nano to macro.
[7] Julio Saez-Rodriguez,et al. Mapping the human phosphatome on growth pathways , 2012, Molecular systems biology.
[8] P. Nowell. The clonal evolution of tumor cell populations. , 1976, Science.
[9] Jan-Fang Cheng,et al. Dicer, Drosha, and outcomes in patients with ovarian cancer. , 2008, The New England journal of medicine.
[10] J. Dopazo,et al. Discovering the hidden sub-network component in a ranked list of genes or proteins derived from genomic experiments , 2012, Nucleic acids research.
[11] D. Lauffenburger,et al. Combined experimental and computational analysis of DNA damage signaling reveals context-dependent roles for Erk in apoptosis and G1/S arrest after genotoxic stress , 2012, Molecular systems biology.
[12] N. Rosenfeld,et al. Non-invasive analysis of acquired resistance to cancer therapy by sequencing of plasma DNA , 2013, Nature.
[13] E. Wang,et al. Dynamic modeling and analysis of cancer cellular network motifs. , 2011, Integrative biology : quantitative biosciences from nano to macro.
[14] Hidenori Ojima,et al. Downregulation of the microRNA biogenesis components and its association with poor prognosis in hepatocellular carcinoma , 2013, Cancer science.
[15] C. Sander,et al. Mutual exclusivity analysis identifies oncogenic network modules. , 2012, Genome research.
[16] Sol Efroni,et al. Biomarker robustness reveals the PDGF network as driving disease outcome in ovarian cancer patients in multiple studies , 2012, BMC Systems Biology.
[17] Steven J. M. Jones,et al. Comprehensive molecular portraits of human breast tumours , 2013 .
[18] Q. Cui,et al. Regulatory network motifs and hotspots of cancer genes in a mammalian cellular signalling network. , 2007, IET systems biology.
[19] A. McKenna,et al. Absolute quantification of somatic DNA alterations in human cancer , 2012, Nature Biotechnology.
[20] Edda Klipp,et al. Modelling reveals novel roles of two parallel signalling pathways and homeostatic feedbacks in yeast , 2012, Molecular systems biology.
[21] Steven J. M. Jones,et al. Comprehensive genomic characterization of squamous cell lung cancers , 2012, Nature.
[22] Yang Xiang,et al. Weighted Frequent Gene Co-expression Network Mining to Identify Genes Involved in Genome Stability , 2012, PLoS Comput. Biol..
[23] F. Ferrari,et al. A MicroRNA Targeting Dicer for Metastasis Control , 2010, Cell.
[24] M. Gerstein,et al. AlleleSeq: analysis of allele-specific expression and binding in a network framework , 2011, Molecular systems biology.
[25] Kenneth H. Buetow,et al. PID: the Pathway Interaction Database , 2008, Nucleic Acids Res..
[26] N. Carter,et al. Massive Genomic Rearrangement Acquired in a Single Catastrophic Event during Cancer Development , 2011, Cell.
[27] Edwin Wang. Cancer Systems Biology , 2010 .
[28] Edwin Wang,et al. Signaling network analysis of ubiquitin-mediated proteins suggests correlations between the 26S proteasome and tumor progression. , 2009, Molecular bioSystems.
[29] B. Vogelstein,et al. A genetic model for colorectal tumorigenesis , 1990, Cell.
[30] Edwin Wang,et al. Cancer systems biology in the genome sequencing era: part 2, evolutionary dynamics of tumor clonal networks and drug resistance. , 2013, Seminars in cancer biology.
[31] A. Børresen-Dale,et al. The Life History of 21 Breast Cancers , 2012, Cell.
[32] Javier M. Buldú,et al. Successful strategies for competing networks , 2013, ArXiv.
[33] Hiroaki Kitano,et al. A framework for mapping, visualisation and automatic model creation of signal-transduction networks , 2012, Molecular systems biology.
[34] Mark D. Johnson,et al. Functional genomic analysis of chromosomal aberrations in a compendium of 8000 cancer genomes , 2013, Genome research.
[35] Stephen J. Elledge,et al. Profiling Essential Genes in Human Mammary Cells by Multiplex RNAi Screening , 2008, Science.
[36] Y. Nakamura,et al. Genetic alterations during colorectal-tumor development. , 1988, The New England journal of medicine.
[37] Benjamin J. Raphael,et al. Integrated Genomic Analyses of Ovarian Carcinoma , 2011, Nature.
[38] Edwin Wang,et al. Self-organization of gene regulatory network motifs enriched with short transcript's half-life transcription factors , 2005, q-bio/0504025.
[39] T. Graeber,et al. Glucose deprivation activates a metabolic and signaling amplification loop leading to cell death , 2012, Molecular systems biology.
[40] Steven J. M. Jones,et al. Comprehensive molecular portraits of human breast tumors , 2012, Nature.
[41] Zhiping Weng,et al. Identification of functional modules that correlate with phenotypic difference: the influence of network topology , 2010, Genome Biology.
[42] Q. Cui,et al. Identification of high-quality cancer prognostic markers and metastasis network modules , 2010, Nature communications.
[43] Jeremy L. Muhlich,et al. Properties of cell death models calibrated and compared using Bayesian approaches , 2013, Molecular systems biology.
[44] Simo V. Zhang,et al. A map of human cancer signaling , 2007, Molecular systems biology.
[45] J. Qian,et al. Construction of human activity-based phosphorylation networks , 2013, Molecular systems biology.
[46] T. Ideker,et al. Differential network biology , 2012, Molecular systems biology.
[47] C. Perou,et al. Allele-specific copy number analysis of tumors , 2010, Proceedings of the National Academy of Sciences.
[48] E. Wang,et al. Genetic studies of diseases , 2007, Cellular and Molecular Life Sciences.
[49] A. McKenna,et al. Evolution and Impact of Subclonal Mutations in Chronic Lymphocytic Leukemia , 2012, Cell.
[50] Q. Cui,et al. Principles of microRNA regulation of a human cellular signaling network , 2006, Molecular systems biology.
[51] M. Moran,et al. The human phosphotyrosine signaling network: Evolution and hotspots of hijacking in cancer , 2012, Genome research.
[52] D. Horst,et al. Overexpression of Dicer predicts poor survival in colorectal cancer. , 2011, European journal of cancer.