The UCSC Xena Platform for cancer genomics data visualization and interpretation
暂无分享,去创建一个
Mary Goldman | Brian Craft | David Haussler | Jingchun Zhu | Angela N. Brooks | Akhil Kamath | D. Haussler | Jingchun Zhu | Brian Craft | M. Goldman | Yunhai Luo | Mim Hastie | Kristupas Repečka | Fran McDade | Akhil Kamath | Dave Rogers | Ayan Banerjee
[1] Mark Diekhans,et al. MuPIT interactive: webserver for mapping variant positions to annotated, interactive 3D structures , 2013, Human Genetics.
[2] David Haussler,et al. TumorMap: Exploring the Molecular Similarities of Cancer Samples in an Interactive Portal. , 2017, Cancer research.
[3] L. Chin,et al. Making sense of cancer genomic data. , 2011, Genes & development.
[4] E. Mardis. The impact of next-generation sequencing technology on genetics. , 2008, Trends in genetics : TIG.
[5] Xin Zhou,et al. Pan-cancer genome and transcriptome analyses of 1,699 pediatric leukemias and solid tumors , 2018, Nature.
[6] D. Hanahan,et al. Hallmarks of Cancer: The Next Generation , 2011, Cell.
[7] Hui Shen,et al. DNA methylation loss in late-replicating domains is linked to mitotic cell division , 2018, Nature Genetics.
[8] Adam A. Margolin,et al. The Cancer Cell Line Encyclopedia enables predictive modeling of anticancer drug sensitivity , 2012, Nature.
[9] Nicola J. Rinaldi,et al. Genetic effects on gene expression across human tissues , 2017, Nature.
[10] Icgc,et al. Pan-cancer analysis of whole genomes , 2017, bioRxiv.
[11] Robert J. Lonigro,et al. Integrative Clinical Genomics of Metastatic Cancer , 2017, Nature.
[12] Helga Thorvaldsdóttir,et al. Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration , 2012, Briefings Bioinform..
[13] Li Ding,et al. Perspective on Oncogenic Processes at the End of the Beginning of Cancer Genomics , 2018, Cell.
[14] Joshua M. Stuart,et al. Machine Learning Identifies Stemness Features Associated with Oncogenic Dedifferentiation. , 2018, Cell.
[15] J. Haerting,et al. Gene-expression signatures in breast cancer. , 2003, The New England journal of medicine.
[16] Nuria Lopez-Bigas,et al. Gitools: Analysis and Visualisation of Genomic Data Using Interactive Heat-Maps , 2011, PloS one.
[17] Quin F. Wills,et al. Application of single-cell genomics in cancer: promise and challenges , 2015, Human molecular genetics.
[18] David Haussler,et al. Comparative genomic analysis for pediatric cancer patients evaluated in a California Initiative to Advance Precision Medicine Demonstration Project. , 2017 .
[19] Maria Jesus Martin,et al. BioJS: an open source JavaScript framework for biological data visualization , 2013, Bioinform..
[20] Jannik N. Andersen,et al. Cancer genomics: from discovery science to personalized medicine , 2011, Nature Medicine.
[21] B. Langmead,et al. Cloud computing for genomic data analysis and collaboration , 2018, Nature Reviews Genetics.
[22] Heidi Ledford. Big science: The cancer genome challenge , 2010, Nature.
[23] Gary D Bader,et al. International network of cancer genome projects , 2010, Nature.
[24] Allison P. Heath,et al. Toward a Shared Vision for Cancer Genomic Data. , 2016, The New England journal of medicine.
[25] Li Ding,et al. Driver Fusions and Their Implications in the Development and Treatment of Human Cancers , 2018, Cell reports.
[26] Benjamin J. Raphael,et al. MAGI: visualization and collaborative annotation of genomic aberrations , 2015, Nature Methods.
[27] Somasekar Seshagiri,et al. Somatic mutations lead to an oncogenic deletion of met in lung cancer. , 2006, Cancer research.
[28] Nuria Lopez-Bigas,et al. Visualizing multidimensional cancer genomics data , 2013, Genome Medicine.
[29] Arul M. Chinnaiyan,et al. Cancer transcriptome profiling at the juncture of clinical translation , 2017, Nature Reviews Genetics.
[30] Mauro A. A. Castro,et al. The chromatin accessibility landscape of primary human cancers , 2018, Science.
[31] Mary Goldman,et al. Toil enables reproducible, open source, big biomedical data analyses , 2017, Nature Biotechnology.
[32] Peter W. Laird,et al. Cell-of-Origin Patterns Dominate the Molecular Classification of 10,000 Tumors from 33 Types of Cancer , 2018, Cell.
[33] David J. Arenillas,et al. Cis-regulatory somatic mutations and gene-expression alteration in B-cell lymphomas , 2014, Genome Biology.
[34] Benjamin E. Gross,et al. The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data. , 2012, Cancer discovery.
[35] M. Schatz,et al. Big Data: Astronomical or Genomical? , 2015, PLoS biology.
[36] John Quackenbush,et al. WebMeV: a Cloud Platform for Analyzing and Visualizing Cancer Genomic Data , 2017, bioRxiv.
[37] Thomas Zichner,et al. Ordino: a visual cancer analysis tool for ranking and exploring genes, cell lines and tissue samples , 2019, Bioinform..
[38] Syed Haider,et al. International Cancer Genome Consortium Data Portal—a one-stop shop for cancer genomics data , 2011, Database J. Biol. Databases Curation.
[39] klaguia. International Network of Cancer Genome Projects , 2010 .
[40] Steven J. M. Jones,et al. Oncogenic Signaling Pathways in The Cancer Genome Atlas. , 2018, Cell.
[41] Steven J. M. Jones,et al. Comprehensive molecular profiling of lung adenocarcinoma , 2014, Nature.
[42] L. Staudt,et al. The NCI Genomic Data Commons as an engine for precision medicine. , 2017, Blood.