Jingchun Zhu

发表

A user’s guide to the online resources for data exploration, visualization, and discovery for the Pan-Cancer Analysis of Whole Genomes project (PCAWG)

Mary Goldman, Junjun Zhang, Nuno A. Fonseca, 2019 .

Mapping PetaSHA Applications to TeraGrid Architectures

Jingchun Zhu, Philip J. Maechling, Yi Cui, 2007 .

The impact of rare variation on gene expression across tissues

Gao Wang, Mary Goldman, Brian Craft, 2016, Nature.

Abstract 5270: The UCSC Xena system for integrating and visualizing functional genomics

Mary Goldman, Brian Craft, David Haussler, 2016 .

Abstract B1-07: Using the UCSC Xena Platform to integrate, visualize, and analyze your own data in the context of large external genomic datasets

Mary Goldman, Brian Craft, David Haussler, 2015 .

Genomic basis for RNA alterations in cancer

Mary Goldman, Nuno A. Fonseca, Brian Craft, 2020, Nature.

The UCSC Xena platform for public and private cancer genomics data visualization and interpretation

Mary Goldman, Brian Craft, David Haussler, 2018, bioRxiv.

Abstract 4985: The UCSC Cancer Genomics Browser

Mary Goldman, Brian Craft, David Haussler, 2011 .

Abstract 2274: Cancer genomics visualization and interpretation using UCSC Xena

Mary Goldman, Brian Craft, David Haussler, 2018 .

Database verification studies of SWISS-PROT and GenBank

Peter D. Karp, Jingchun Zhu, Suzanne M. Paley, 2001, Bioinform..

Abstract 43: Using matrix factorization to discover clinically-relevant molecular signatures across cancers

David Haussler, Jingchun Zhu, Joshua M. Stuart, 2011 .

Online resources for PCAWG data exploration, visualization, and discovery

Mary Goldman, Junjun Zhang, Nuno A. Fonseca, 2017 .

The UCSC cancer genomics browser: update 2011

Mary Goldman, Brian Craft, David Haussler, 2010, Nucleic Acids Res..

The UCSC Cancer Genomics Browser: update 2015

Mary Goldman, Brian Craft, David Haussler, 2014, Nucleic Acids Res..

Rapid and efficient analysis of 20,000 RNA-seq samples with Toil

Mary Goldman, Brian Craft, Brian O'Connor, 2016, bioRxiv.

Abstract 2584: The UCSC Xena system for cancer genomics data visualization and interpretation

Mary Goldman, Brian Craft, David Haussler, 2017 .

The UCSC Cancer Genomics Browser: update 2015

Mary Goldman, Brian Craft, David Haussler, 2014, Nucleic Acids Res..

Realizing the Promise of Reverse Phase Protein Arrays for Clinical, Translational, and Basic Research: A Workshop Report

Jingchun Zhu, Rehan Akbani, Gordon B Mills, 2014, Molecular & Cellular Proteomics.

Inference of patient-specific pathway activities from multi-dimensional cancer genomics data using PARADIGM

David Haussler, Jingchun Zhu, Dent Earl, 2010, Bioinform..

Toil enables reproducible, open source, big biomedical data analyses

Mary Goldman, Brian Craft, David Haussler, 2017, Nature Biotechnology.

Comparative Genomics Search for Losses of Long-Established Genes on the Human Lineage

David Haussler, Jingchun Zhu, Mark Diekhans, 2007, PLoS Comput. Biol..

Visualizing and interpreting cancer genomics data via the Xena platform

Brian Craft, David Haussler, Jingchun Zhu, 2020, Nature Biotechnology.

The Human Epigenome Browser at Washington University

David Haussler, Jingchun Zhu, Ivan Smirnov, 2011, Nature Methods.

The UCSC Cancer Genomics Browser

Ting Wang, David Haussler, Jingchun Zhu, 2009, Nature Methods.

Comparative Tumor RNA Sequencing Analysis for Difficult-to-Treat Pediatric and Young Adult Patients With Cancer

David Haussler, Jingchun Zhu, Katrina Learned, 2019, JAMA network open.

Exploring the phenotypic consequences of tissue specific gene expression variation inferred from GWAS summary statistics

Mary Goldman, Brian Craft, Jingchun Zhu, 2016, Nature Communications.

Abstract LB-212: Treehouse Childhood Cancer Project: a resource for sharing and multiple cohort analysis of pediatric cancer genomics data

David Haussler, Jingchun Zhu, Katrina Learned, 2015 .