Biosynthetic engineering for the assembly of better drugs
暂无分享,去创建一个
[1] G. P. Smith,et al. Filamentous fusion phage: novel expression vectors that display cloned antigens on the virion surface. , 1985, Science.
[2] David R. Liu,et al. Reaction discovery enabled by DNA-templated synthesis and in vitro selection , 2004, Nature.
[3] H. Reichenbach,et al. Epothilone A and B—Novel 16-Membered Macrolides with Cytotoxic Activity: Isolation, Crystal Structure, and Conformation in Solution† , 1996 .
[4] R. Strausberg,et al. From Knowing to Controlling: A Path from Genomics to Drugs Using Small Molecule Probes , 2003, Science.
[5] T. Ashburn,et al. Drug repositioning: identifying and developing new uses for existing drugs , 2004, Nature Reviews Drug Discovery.
[6] Harren Jhoti,et al. High-throughput crystallography for lead discovery in drug design , 2002, Nature Reviews Drug Discovery.
[7] Yong Zhou,et al. Roll: a new algorithm for the detection of protein pockets and cavities with a rolling probe sphere , 2010, Bioinform..
[8] D J Newman,et al. The influence of natural products upon drug discovery. , 2000, Natural product reports.
[9] C. Poulter,et al. Farnesyl Diphosphate Synthase. A Paradigm for Understanding Structure and Function Relationships in E-polyprenyl Diphosphate Synthases , 2006, Phytochemistry Reviews.
[10] D. Lauffenburger,et al. A Systems Model of Signaling Identifies a Molecular Basis Set for Cytokine-Induced Apoptosis , 2005, Science.
[11] E. Kunkel. Systems biology in drug discovery , 2004, Nature Biotechnology.
[12] S. P. Fodor,et al. Applications of combinatorial technologies to drug discovery. 1. Background and peptide combinatorial libraries. , 1994, Journal of medicinal chemistry.
[13] J. Keasling. Manufacturing Molecules Through Metabolic Engineering , 2010, Science.
[14] Haruo Ikeda,et al. Exploration and mining of the bacterial terpenome. , 2012, Accounts of chemical research.
[15] Rutger H A Folmer,et al. Discovery of a novel warhead against beta-secretase through fragment-based lead generation. , 2007, Journal of medicinal chemistry.
[16] K. Nicolaou,et al. Total Synthesis of Taxol. 3. Formation of Taxol's ABC Ring Skeleton , 1995 .
[17] Lydia E. Kavraki,et al. Finding metabolic pathways using atom tracking , 2010, Bioinform..
[18] Joseph C. Hogan,et al. Combinatorial chemistry in drug discovery , 1997, Nature Biotechnology.
[19] Martin Kircher,et al. High‐throughput DNA sequencing – concepts and limitations , 2010, BioEssays : news and reviews in molecular, cellular and developmental biology.
[20] G. Challis,et al. Predictive, structure-based model of amino acid recognition by nonribosomal peptide synthetase adenylation domains. , 2000, Chemistry & biology.
[21] S. Schreiber,et al. Target-oriented and diversity-oriented organic synthesis in drug discovery. , 2000, Science.
[22] S. Ley,et al. A Flow Process for the Multi‐Step Synthesis of the Alkaloid Natural Product Oxomaritidine: A New Paradigm for Molecular Assembly. , 2006 .
[23] T. Huynh-Dinh,et al. The logic of chemical synthesis , 1996 .
[24] John R. Goodell,et al. Development of an automated microfluidic reaction platform for multidimensional screening: reaction discovery employing bicyclo[3.2.1]octanoid scaffolds. , 2009, The Journal of organic chemistry.
[25] A. Sali,et al. Comparative protein structure modeling of genes and genomes. , 2000, Annual review of biophysics and biomolecular structure.
[26] I. Kola,et al. Can the pharmaceutical industry reduce attrition rates? , 2004, Nature Reviews Drug Discovery.
[27] Wendy A. Warr,et al. Fragment-based drug discovery , 2009, J. Comput. Aided Mol. Des..
[28] Kelly M. Thayer,et al. Combining metabolic and protein engineering of a terpenoid biosynthetic pathway for overproduction and selectivity control , 2010, Proceedings of the National Academy of Sciences.
[29] Gitanjali Yadav,et al. Computational approach for prediction of domain organization and substrate specificity of modular polyketide synthases. , 2003, Journal of molecular biology.
[30] Gregory Stephanopoulos,et al. Reevaluating synthesis by biology. , 2010, Current opinion in microbiology.
[31] Sylvie Lautru,et al. Discovery of a new peptide natural product by Streptomyces coelicolor genome mining , 2005, Nature chemical biology.
[32] H. Barnes,et al. Expression and enzymatic activity of recombinant cytochrome P450 17 alpha-hydroxylase in Escherichia coli. , 1991, Proceedings of the National Academy of Sciences of the United States of America.
[33] R. Arteca,et al. Taxus Cell Suspension Cultures: Optimizing Growth and Production of Taxol , 1994 .
[34] G. Stephanopoulos,et al. Exploiting biological complexity for strain improvement through systems biology , 2004, Nature Biotechnology.
[35] Orr Ravitz,et al. Data-driven computer aided synthesis design. , 2013, Drug discovery today. Technologies.
[36] Matthew E Welsch,et al. Privileged scaffolds for library design and drug discovery. , 2010, Current opinion in chemical biology.
[37] B. Trost,et al. The atom economy--a search for synthetic efficiency. , 1991, Science.
[38] R. Dixon. Natural products and plant disease resistance , 2001, Nature.
[39] Hans-Jürgen Federsel,et al. A guide to drug discovery: Logistics of process R&D: transforming laboratory methods to manufacturing scale , 2003, Nature Reviews Drug Discovery.
[40] Michael A Fischbach,et al. One pathway, many products. , 2007, Nature chemical biology.
[41] F. Pammolli,et al. The productivity crisis in pharmaceutical R&D , 2011, Nature Reviews Drug Discovery.
[42] F. Koehn,et al. The evolving role of natural products in drug discovery , 2005, Nature Reviews Drug Discovery.
[43] K. R. Marshall,et al. P450 BM3: the very model of a modern flavocytochrome. , 2002, Trends in biochemical sciences.
[44] Oliver Kohlbacher,et al. Using Atom Mapping Rules for an Improved Detection of Relevant Routes in Weighted Metabolic Networks , 2008, J. Comput. Biol..
[45] J. Vederas,et al. [Drug discovery and natural products: end of era or an endless frontier?]. , 2011, Biomeditsinskaia khimiia.
[46] B A Pfeifer,et al. Biosynthesis of Complex Polyketides in a Metabolically Engineered Strain of E. coli , 2001, Science.
[47] Timothy S. Ham,et al. Production of the antimalarial drug precursor artemisinic acid in engineered yeast , 2006, Nature.
[48] John C. Anderson,et al. Determining Manufacturing Costs , 2008 .
[49] H. Kolb,et al. The growing impact of click chemistry on drug discovery. , 2003, Drug discovery today.
[50] Keith E. J. Tyo,et al. Isoprenoid Pathway Optimization for Taxol Precursor Overproduction in Escherichia coli , 2010, Science.
[51] R. Firn,et al. The evolution of secondary metabolism – a unifying model , 2000, Molecular microbiology.
[52] Miklos Feher,et al. Property Distributions: Differences between Drugs, Natural Products, and Molecules from Combinatorial Chemistry , 2003, J. Chem. Inf. Comput. Sci..
[53] Van V. Brantner,et al. Estimating the cost of new drug development: is it really 802 million dollars? , 2006, Health affairs.
[54] Dudley H. Williams,et al. The evolutionary role of secondary metabolites--a review. , 1992, Gene.
[55] Stefan Wetzel,et al. Interactive exploration of chemical space with Scaffold Hunter. , 2009, Nature chemical biology.
[56] Peter G Schultz,et al. Synthesis at the interface of chemistry and biology. , 2009, Journal of the American Chemical Society.
[57] M. Congreve,et al. Fragment-based lead discovery , 2004, Nature Reviews Drug Discovery.
[58] Stuart L Schreiber,et al. A planning strategy for diversity-oriented synthesis. , 2004, Angewandte Chemie.
[59] G. Stephanopoulos. Metabolic fluxes and metabolic engineering. , 1999, Metabolic engineering.
[60] David Baker,et al. A novel semi-biosynthetic route for artemisinin production using engineered substrate-promiscuous P450(BM3). , 2009, ACS chemical biology.
[61] J. Bohlmann,et al. Terpenoid biomaterials. , 2008, The Plant journal : for cell and molecular biology.
[62] H. Mario Geysen,et al. A guide to drug discovery: Combinatorial compound libraries for drug discovery: an ongoing challenge , 2003, Nature Reviews Drug Discovery.
[63] Tadeusz F Molinski,et al. NMR of natural products at the 'nanomole-scale'. , 2010, Natural product reports.
[64] Keith E. J. Tyo,et al. Terpenoids: opportunities for biosynthesis of natural product drugs using engineered microorganisms. , 2008, Molecular pharmaceutics.
[65] R. Croteau,et al. Molecular cloning of a cytochrome P450 taxane 10 beta-hydroxylase cDNA from Taxus and functional expression in yeast. , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[66] Ruben Abagyan,et al. Homology Modeling: Methods and Protocols , 2023, Methods in Molecular Biology.
[67] Marco Roos,et al. The promise of a virtual lab in drug discovery. , 2006, Drug discovery today.
[68] John P. Overington,et al. How many drug targets are there? , 2006, Nature Reviews Drug Discovery.
[69] J. DiMasi,et al. Returns on Research and Development for 1990s New Drug Introductions , 2012, PharmacoEconomics.
[70] R. Frank,et al. New estimates of drug development costs. , 2003, Journal of health economics.
[71] John F. Hartwig,et al. A Simple, Multidimensional Approach to High-Throughput Discovery of Catalytic Reactions , 2011, Science.
[72] Kai Blin,et al. antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences , 2011, Nucleic Acids Res..
[73] W. Bornmann,et al. Total Synthesis of Baccatin III and Taxol , 1996 .
[74] Judy Peng,et al. Continous bioprocessing: An interview with Konstantin Konstantinov from Genzyme , 2011 .
[75] Sason Shaik,et al. Mechanism of oxidation reactions catalyzed by cytochrome p450 enzymes. , 2004, Chemical reviews.
[76] G. Challis,et al. Coelichelin, a new peptide siderophore encoded by the Streptomyces coelicolor genome: structure prediction from the sequence of its non-ribosomal peptide synthetase. , 2000, FEMS microbiology letters.
[77] Vicki Brower. Back to nature: extinction of medicinal plants threatens drug discovery. , 2008, Journal of the National Cancer Institute.
[78] C. Khosla,et al. Cloning and heterologous expression of the epothilone gene cluster. , 2000, Science.
[79] Tudor I. Oprea,et al. Chemography: the Art of Navigating in Chemical Space , 2000 .
[80] J. Bailey,et al. Toward a science of metabolic engineering , 1991, Science.
[81] J. Liao,et al. Metabolic engineering of isoprenoids. , 2001, Metabolic engineering.
[82] C. Poulter,et al. Chimeras of Two Isoprenoid Synthases Catalyze All Four Coupling Reactions in Isoprenoid Biosynthesis , 2007, Science.
[83] Jay D Keasling,et al. Production of isoprenoid pharmaceuticals by engineered microbes , 2006, Nature chemical biology.
[84] W. Weckwerth,et al. Biosynthesis of taxol: enzymatic acetylation of 10-deacetylbaccatin-III to baccatin-III in crude extracts from roots of Taxus baccata. , 1996, Biochemical and Biophysical Research Communications - BBRC.
[85] R. Croteau,et al. Taxol biosynthetic genes. , 2001, Phytochemistry.
[86] S. P. Fodor,et al. Applications of combinatorial technologies to drug discovery. 2. Combinatorial organic synthesis, library screening strategies, and future directions. , 1994, Journal of medicinal chemistry.
[87] Matthew A. Cooper,et al. Optical biosensors in drug discovery , 2002, Nature Reviews Drug Discovery.
[88] Thomas E. Ferrin,et al. Designed divergent evolution of enzyme function , 2006, Nature.
[89] Olof Ramström,et al. Drug discovery by dynamic combinatorial libraries , 2002, Nature Reviews Drug Discovery.
[90] President Emeritus. Drug Discovery and Development Technology in Transition , 2013 .
[91] K. Nicolaou,et al. Total synthesis of taxol , 1994, Nature.
[92] M. Jackson. Nature's chemicals. The natural products that shaped our world , 2010 .
[93] Matthew S Sigman,et al. Multidimensional steric parameters in the analysis of asymmetric catalytic reactions. , 2012, Nature chemistry.
[94] Pedro de Atauri,et al. Metabolic control analysis in drug discovery and disease , 2002, Nature Biotechnology.
[95] K. Nicolaou,et al. Total Synthesis of Taxol. 4. The Final Stages and Completion of the Synthesis , 1995 .
[96] W. Pangborn,et al. Structural basis for androgen specificity and oestrogen synthesis in human aromatase , 2009, Nature.
[97] John P. Huelsenbeck,et al. MrBayes 3: Bayesian phylogenetic inference under mixed models , 2003, Bioinform..
[98] Gianni Chessari,et al. Application of fragment-based lead generation to the discovery of novel, cyclic amidine beta-secretase inhibitors with nanomolar potency, cellular activity, and high ligand efficiency. , 2007, Journal of medicinal chemistry.
[99] Andrej Sali,et al. Comparative Protein Structure Modeling Using MODELLER , 2014, Current protocols in bioinformatics.
[100] Matthew S. Sigman,et al. Relationships Guides Asymmetric Propargylation Three-Dimensional Correlation of Steric and Electronic Free Energy , 2014 .
[101] P. Leeson,et al. The influence of drug-like concepts on decision-making in medicinal chemistry , 2007, Nature Reviews Drug Discovery.
[102] B. Pignataro. New strategies in chemical synthesis and catalysis , 2012 .
[103] David W. Christianson,et al. Taxadiene Synthase Structure and Evolution of Modular Architecture in Terpene Biosynthesis , 2010, Nature.
[104] M. Koffas,et al. Engineering of Artificial Plant Cytochrome P450 Enzymes for Synthesis of Isoflavones by Escherichia coli , 2007, Applied and Environmental Microbiology.
[105] Trond Ulven,et al. A multistep continuous-flow system for rapid on-demand synthesis of receptor ligands. , 2009, Organic letters.
[106] Y. Pang,et al. In Silico Drug Discovery: Solving the “Target‐rich and Lead‐poor” Imbalance Using the Genome‐to‐drug‐lead Paradigm , 2006, Clinical pharmacology and therapeutics.
[107] G. Stephanopoulos,et al. Relative potential of biosynthetic pathways for biofuels and bio-based products , 2011, Nature Biotechnology.
[108] Lin Tao,et al. Clustered patterns of species origins of nature-derived drugs and clues for future bioprospecting , 2011, Proceedings of the National Academy of Sciences.
[109] P. Waligórski,et al. Determination of 10-deacetylbaccatine III in Taxus baccata needles by micellar electrokinetic chromatography. , 2009 .
[110] G. V. Paolini,et al. Global mapping of pharmacological space , 2006, Nature Biotechnology.
[111] Jo Handelsman,et al. Biotechnological prospects from metagenomics. , 2003, Current opinion in biotechnology.
[112] D. Hamdane,et al. Oxygen activation by cytochrome P450 monooxygenase , 2008, Photosynthesis Research.
[113] T. Doi,et al. A formal total synthesis of taxol aided by an automated synthesizer. , 2006, Chemistry, an Asian journal.
[114] W. J. Feast,et al. From science to applications , 1993 .
[115] Gianni Chessari,et al. Application of fragment screening by X-ray crystallography to beta-secretase. , 2007, Journal of medicinal chemistry.
[116] K. Nicolaou,et al. Total Synthesis of Taxol. 1. Retrosynthesis, Degradation, and Reconstitution , 1995 .
[117] D. Newman,et al. Natural products as sources of new drugs over the last 25 years. , 2007, Journal of natural products.
[118] R. Croteau,et al. Random sequencing of an induced Taxus cell cDNA library for identification of clones involved in Taxol biosynthesis , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[119] Marcel L. Verdonk,et al. The consequences of translational and rotational entropy lost by small molecules on binding to proteins , 2002, J. Comput. Aided Mol. Des..
[120] S. Emerson,et al. Large-scale expansion of human stem and progenitor cells from bone marrow mononuclear cells in continuous perfusion cultures. , 1993, Blood.
[121] P. Hajduk,et al. High-throughput nuclear magnetic resonance-based screening. , 1999, Journal of medicinal chemistry.
[122] J. Gershenzon,et al. The function of terpene natural products in the natural world. , 2007, Nature chemical biology.
[123] M. Lindsay. Target discovery , 2003, Nature Reviews Drug Discovery.