The Simbios National Center: Systems Biology in Motion
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Jeanette P. Schmidt | Russ B. Altman | Vijay S. Pande | Charles A. Taylor | Scott L. Delp | Michael A. Sherman | R. Altman | S. Delp | V. Pande | Jeanette P. Schmidt | Charles A. Taylor
[1] R. Stephenson. A and V , 1962, The British journal of ophthalmology.
[2] M. Karplus,et al. CHARMM: A program for macromolecular energy, minimization, and dynamics calculations , 1983 .
[3] F.E. Zajac,et al. An interactive graphics-based model of the lower extremity to study orthopaedic surgical procedures , 1990, IEEE Transactions on Biomedical Engineering.
[4] T. Cech. Self-splicing of group I introns. , 1990, Annual review of biochemistry.
[5] M Puso,et al. NIKE3D a nonlinear, implicit, three-dimensional finite element code for solid and structural mechanics user's manual update summary , 1991 .
[6] Whirley. DYNA3D: A nonlinear, explicit, three-dimensional finite element code for solid and structural mechanics , 1993 .
[7] F E Zajac,et al. Muscle coordination of movement: a perspective. , 1993, Journal of biomechanics.
[8] Abhinandan Jain,et al. A fast recursive algorithm for molecular dynamics simulation , 1993 .
[9] D. van der Spoel,et al. GROMACS: A message-passing parallel molecular dynamics implementation , 1995 .
[10] S L Delp,et al. A graphics-based software system to develop and analyze models of musculoskeletal structures. , 1995, Computers in biology and medicine.
[11] C. Kundrot,et al. Crystal Structure of a Group I Ribozyme Domain: Principles of RNA Packing , 1996, Science.
[12] Abhinandan Jain,et al. Constant temperature constrained molecular dynamics: The Newton-Euler inverse mass operator method , 1996 .
[13] A. Hindmarsh,et al. CVODE, a stiff/nonstiff ODE solver in C , 1996 .
[14] B. Tidor. Molecular dynamics simulations , 1997, Current Biology.
[15] J. Ponder,et al. Calculation of the reaction field due to off-center point multipoles , 1997 .
[16] T. Cech,et al. A preorganized active site in the crystal structure of the Tetrahymena ribozyme. , 1998, Science.
[17] C. Keasar,et al. Empirical modifications to the Amber/OPLS potential for predicting the solution conformations of cyclic peptides by vacuum calculations. , 1998, Folding & design.
[18] Jay W. Ponder,et al. Analysis and Application of Potential Energy Smoothing and Search Methods for Global Optimization , 1998 .
[19] C. Cramer,et al. Implicit Solvation Models: Equilibria, Structure, Spectra, and Dynamics. , 1999, Chemical reviews.
[20] Oussama Khatib,et al. Efficient algorithm for extended operational space inertia matrix , 1999, Proceedings 1999 IEEE/RSJ International Conference on Intelligent Robots and Systems. Human and Environment Friendly Robots with High Intelligence and Emotional Quotients (Cat. No.99CH36289).
[21] D. E. Clark. Rapid calculation of polar molecular surface area and its application to the prediction of transport phenomena. 1. Prediction of intestinal absorption. , 1999, Journal of pharmaceutical sciences.
[22] Vijay S. Pande,et al. Screen Savers of the World Unite! , 2000, Science.
[23] T. Steitz,et al. The complete atomic structure of the large ribosomal subunit at 2.4 A resolution. , 2000, Science.
[24] C. Vonrhein,et al. Structure of the 30S ribosomal subunit , 2000, Nature.
[25] A. Houdusse,et al. Three conformational states of scallop myosin S1. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[26] D. Herschlag,et al. Probing the folding landscape of the Tetrahymena ribozyme: commitment to form the native conformation is late in the folding pathway. , 2001, Journal of molecular biology.
[27] C D Schwieters,et al. Internal coordinates for molecular dynamics and minimization in structure determination and refinement. , 2001, Journal of magnetic resonance.
[28] M. Tomita. Whole-cell simulation: a grand challenge of the 21st century. , 2001, Trends in biotechnology.
[29] M. Pandy,et al. Dynamic optimization of human walking. , 2001, Journal of biomechanical engineering.
[30] T. Earnest,et al. Crystal Structure of the Ribosome at 5.5 Å Resolution , 2001, Science.
[31] Berk Hess,et al. GROMACS 3.0: a package for molecular simulation and trajectory analysis , 2001 .
[32] J. Irwin,et al. Lead discovery using molecular docking. , 2002, Current opinion in chemical biology.
[33] J. Berg,et al. Molecular dynamics simulations of biomolecules , 2002, Nature Structural Biology.
[34] V. Pande,et al. Absolute comparison of simulated and experimental protein-folding dynamics , 2002, Nature.
[35] Scott L Delp,et al. Generating dynamic simulations of movement using computed muscle control. , 2003, Journal of biomechanics.
[36] L. Wood,et al. From the Authors , 2003, European Respiratory Journal.
[37] Pengyu Y. Ren,et al. Polarizable Atomic Multipole Water Model for Molecular Mechanics Simulation , 2003 .
[38] 윤창노,et al. Molecular Dynamics Simulations for Biomolecules , 2004 .
[39] Charles Taylor,et al. EXPERIMENTAL AND COMPUTATIONAL METHODS IN CARDIOVASCULAR FLUID MECHANICS , 2004 .
[40] D. Thirumalai,et al. RNA and protein folding: common themes and variations. , 2005, Biochemistry.
[41] R. Breaker,et al. Riboswitches as versatile gene control elements. , 2005, Current opinion in structural biology.
[42] R. Altman,et al. SAFA: semi-automated footprinting analysis software for high-throughput quantification of nucleic acid footprinting experiments. , 2005, RNA.
[43] Mike P. Liang,et al. Local kinetic measures of macromolecular structure reveal partitioning among multiple parallel pathways from the earliest steps in the folding of a large RNA molecule. , 2006, Journal of molecular biology.
[44] Eric Darve,et al. N-Body simulation on GPUs , 2006, SC.
[45] Pengyu Y. Ren,et al. Generalized coarse-grained model based on point multipole and Gay-Berne potentials. , 2006, The Journal of chemical physics.
[46] Ayman Habib,et al. OpenSim: Open-Source Software to Create and Analyze Dynamic Simulations of Movement , 2007, IEEE Transactions on Biomedical Engineering.
[47] A. Lew,et al. A microstructurally informed model for the mechanical response of three-dimensional actin networks , 2008, Computer methods in biomechanics and biomedical engineering.