A Regression-Based Analysis of Ribosome-Profiling Data Reveals a Conserved Complexity to Mammalian Translation.
暂无分享,去创建一个
Aviv Regev | Nir Hacohen | Marko Jovanovic | Nicholas T. Ingolia | Raktima Raychowdhury | B. Haas | R. Raychowdhury | N. Hacohen | A. Regev | S. Carr | J. Weissman | M. Jovanović | P. Mertins | Edwin H. Rodriguez | Alexander P. Fields | Noam Stern-Ginossar | Steve Carr | Philipp Mertins | Noam Stern-Ginossar | Steven A. Carr | Alexander P. Fields | Edwin H. Rodriguez | Brian J. Haas | Nicholas T. Ingolia | Jonathan S. Weissman | Philipp Mertins
[1] Nicholas T Ingolia,et al. Ribosome profiling reveals pervasive translation outside of annotated protein-coding genes. , 2014, Cell reports.
[2] D. Peabody,et al. Translation initiation at non-AUG triplets in mammalian cells. , 1989, The Journal of biological chemistry.
[3] Steven A Carr,et al. Integrated proteomic analysis of post-translational modifications by serial enrichment , 2013, Nature Methods.
[4] Adi Kimchi,et al. A Novel Form of DAP5 Protein Accumulates in Apoptotic Cells as a Result of Caspase Cleavage and Internal Ribosome Entry Site-Mediated Translation , 2000, Molecular and Cellular Biology.
[5] C. Bult,et al. Transcript Annotation in FANTOM3: Mouse Gene Catalog Based on Physical cDNAs , 2006, PLoS genetics.
[6] B. Dobberstein,et al. Common Principles of Protein Translocation Across Membranes , 1996, Science.
[7] Nicholas T. Ingolia,et al. Ribosome Profiling Provides Evidence that Large Noncoding RNAs Do Not Encode Proteins , 2013, Cell.
[8] D. Tautz,et al. A Segmentation Gene in Tribolium Produces a Polycistronic mRNA that Codes for Multiple Conserved Peptides , 2006, Cell.
[9] John M. Shelton,et al. A Micropeptide Encoded by a Putative Long Noncoding RNA Regulates Muscle Performance , 2015, Cell.
[10] Sumio Sugano,et al. Diversity of Translation Start Sites May Define Increased Complexity of the Human Short ORFeome*S , 2007, Molecular & Cellular Proteomics.
[11] Frances M. G. Pearl,et al. Conserved Regulation of Cardiac Calcium Uptake by Peptides Encoded in Small Open Reading Frames , 2013, Science.
[12] Nicholas T. Ingolia,et al. Ribosome Profiling of Mouse Embryonic Stem Cells Reveals the Complexity and Dynamics of Mammalian Proteomes , 2011, Cell.
[13] D. Morris,et al. Upstream Open Reading Frames as Regulators of mRNA Translation , 2000, Molecular and Cellular Biology.
[14] G. Schlüter,et al. Evidence for translational repression of the SOCS-1 major open reading frame by an upstream open reading frame. , 2000, Biochemical and biophysical research communications.
[15] Yasuaki Oda,et al. Evolutionarily conserved non-AUG translation initiation in NAT1/p97/DAP5 (EIF4G2). , 2005, Genomics.
[16] Nicholas T. Ingolia,et al. Genome-Wide Analysis in Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling , 2009, Science.
[17] P. Jin,et al. RNA-Binding Protein FXR2 Regulates Adult Hippocampal Neurogenesis by Reducing Noggin Expression , 2011, Neuron.
[18] J. Rinn,et al. Ribosome profiling reveals resemblance between long non-coding RNAs and 5′ leaders of coding RNAs , 2013, Development.
[19] A. Schier,et al. Identifying (non‐)coding RNAs and small peptides: Challenges and opportunities , 2015, BioEssays : news and reviews in molecular, cellular and developmental biology.
[20] François-Michel Boisvert,et al. Direct Detection of Alternative Open Reading Frames Translation Products in Human Significantly Expands the Proteome , 2013, PloS one.
[21] Nicholas T. Ingolia,et al. A Bicistronic MAVS Transcript Highlights a Class of Truncated Variants in Antiviral Immunity , 2014, Cell.
[22] Marco Y. Hein,et al. Decoding Human Cytomegalovirus , 2012, Science.
[23] B. Shen,et al. Global mapping of translation initiation sites in mammalian cells at single-nucleotide resolution , 2012, Proceedings of the National Academy of Sciences.
[24] Audrey M. Michel,et al. Observation of dually decoded regions of the human genome using ribosome profiling data , 2012, Genome research.
[25] Jiao Ma,et al. Toddler: An Embryonic Signal That Promotes Cell Movement via Apelin Receptors , 2014, Science.
[26] Nikolaus Rajewsky,et al. Identification of small ORFs in vertebrates using ribosome footprinting and evolutionary conservation , 2014, The EMBO journal.
[27] K. Gupta,et al. Initiation of translation at CUG, GUG, and ACG codons in mammalian cells. , 1990, Gene.
[28] Maxwell R. Mumbach,et al. Dynamic profiling of the protein life cycle in response to pathogens , 2015, Science.
[29] Wenqian Hu,et al. Translation of small open reading frames within unannotated RNA transcripts in Saccharomyces cerevisiae. , 2014, Cell reports.
[30] Terrence S. Furey,et al. The UCSC Genome Browser Database: update 2006 , 2005, Nucleic Acids Res..
[31] Alan Saghatelian,et al. A Human Short Open Reading Frame (sORF)-encoded Polypeptide That Stimulates DNA End Joining* , 2014, The Journal of Biological Chemistry.
[32] G. Peters,et al. Subcellular fate of the lnt-2 oncoprotein is determined by choice of initiation codon , 1990, Nature.
[33] Ying Chen Eyre-Walker,et al. Extensive translation of small Open Reading Frames revealed by Poly-Ribo-Seq , 2014, eLife.
[34] A. Varshavsky,et al. The N-end rule: functions, mysteries, uses. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[35] P. Brown,et al. Distinct stages of the translation elongation cycle revealed by sequencing ribosome-protected mRNA fragments , 2014, eLife.
[36] N. Sonenberg,et al. Regulation of SOCS-1 Expression by Translational Repression* , 2000, The Journal of Biological Chemistry.
[37] Manolis Kellis,et al. PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regions , 2011, Bioinform..
[38] Jun Kawai,et al. The Abundance of Short Proteins in the Mammalian Proteome , 2006, PLoS genetics.
[39] Patrick B. F. O'Connor,et al. Translation of 5′ leaders is pervasive in genes resistant to eIF2 repression , 2015, eLife.
[40] N. Shastri,et al. Leucine-tRNA Initiates at CUG Start Codons for Protein Synthesis and Presentation by MHC Class I , 2012, Science.
[41] David Haussler,et al. The UCSC Genome Browser database: update 2010 , 2009, Nucleic Acids Res..
[42] J. Darnell,et al. Discrimination of common and unique RNA-binding activities among Fragile X mental retardation protein paralogs , 2009, Human molecular genetics.
[43] Joseph A. Rothnagel,et al. Emerging evidence for functional peptides encoded by short open reading frames , 2014, Nature Reviews Genetics.
[44] Rona S. Gertner,et al. Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells , 2013, Nature.