An Algorithm for Efficient Identification of Branched Metabolic Pathways
暂无分享,去创建一个
[1] Jay D. Keasling,et al. Engineering the lycopene synthetic pathway in E. coli by comparison of the carotenoid genes of Pantoea agglomerans and Pantoea ananatis , 2007, Applied Microbiology and Biotechnology.
[2] J. Nielsen,et al. Mathematical modelling of metabolism. , 2000, Current opinion in biotechnology.
[3] Mark Stitt,et al. Pyrimidine and purine biosynthesis and degradation in plants. , 2006, Annual review of plant biology.
[4] Lydia E. Kavraki,et al. Finding metabolic pathways using atom tracking , 2010, Bioinform..
[5] J A Washington,et al. Erythromycin: a microbial and clinical perspective after 30 years of clinical use (1). , 1985, Mayo Clinic proceedings.
[6] P. Turnbaugh,et al. An Invitation to the Marriage of Metagenomics and Metabolomics , 2008, Cell.
[7] Masaaki Kotera,et al. RPAIR : a reactant-pair database representing chemical changes in enzymatic reactions , 2004 .
[8] R. Potenz,et al. Organization of a cluster of erythromycin genes in Saccharopolyspora erythraea , 1990, Journal of bacteriology.
[9] Christoph Kaleta,et al. Response to comment on 'Can sugars be produced from fatty acids? A test case for pathway analysis tools' , 2009, Bioinform..
[10] Zhihao Hu,et al. Process and Metabolic Strategies for Improved Production of Escherichia coli-Derived 6-Deoxyerythronolide B , 2002, Applied and Environmental Microbiology.
[11] Kiyoko F. Aoki-Kinoshita,et al. From genomics to chemical genomics: new developments in KEGG , 2005, Nucleic Acids Res..
[12] Ka-Yiu San,et al. Enhanced Lycopene Productivity by Manipulation of Carbon Flow to Isopentenyl Diphosphate in Escherichia coli , 2005, Biotechnology progress.
[13] J. Nielsen,et al. The role of metabolic engineering in the production of secondary metabolites. , 1998, Current opinion in microbiology.
[14] Kim Sneppen,et al. Pathway identification by network pruning in the metabolic network of Escherichia coli , 2009, Bioinform..
[15] Oliver Kohlbacher,et al. Using Atom Mapping Rules for an Improved Detection of Relevant Routes in Weighted Metabolic Networks , 2008, J. Comput. Biol..
[16] J. van Helden,et al. Metabolic pathfinding using RPAIR annotation. , 2009, Journal of molecular biology.
[17] Suzanne M. Paley,et al. The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases , 2015, Nucleic Acids Res..
[18] J. Bailey,et al. Toward a science of metabolic engineering , 1991, Science.
[19] Oliver Kohlbacher,et al. MetaRoute: fast search for relevant metabolic routes for interactive network navigation and visualization , 2008, Bioinform..
[20] Adam M. Feist,et al. Reconstruction of biochemical networks in microorganisms , 2009, Nature Reviews Microbiology.
[21] Costas D Maranas,et al. Microbial 1-butanol production: Identification of non-native production routes and in silico engineering interventions. , 2010, Biotechnology journal.
[22] John A. Washington,et al. Erythromycin: A Microbial and Clinical Perspective After 30 Years of Clinical Use (First of Two Parts)* , 1985 .
[23] W. Marsden. I and J , 2012 .
[24] F Keller,et al. Allocation of raffinose family oligosaccharides to transport and storage pools in Ajuga reptans: the roles of two distinct galactinol synthases. , 2000, The Plant journal : for cell and molecular biology.
[25] Masanori Arita. In silico atomic tracing by substrate-product relationships in Escherichia coli intermediary metabolism. , 2003, Genome research.
[26] S. Wodak,et al. Inferring meaningful pathways in weighted metabolic networks. , 2006, Journal of molecular biology.
[27] C. Steinbeck,et al. Recent developments of the chemistry development kit (CDK) - an open-source java library for chemo- and bioinformatics. , 2006, Current pharmaceutical design.
[28] Gregory Stephanopoulos,et al. Construction of lycopene-overproducing E. coli strains by combining systematic and combinatorial gene knockout targets , 2005, Nature Biotechnology.
[29] Jens Nielsen,et al. Metabolic engineering of -lactam production , 2003 .
[30] Chaitan Khosla,et al. Structure and mechanism of the 6-deoxyerythronolide B synthase. , 2007, Annual review of biochemistry.
[31] Yoshihiro Yamanishi,et al. KEGG for linking genomes to life and the environment , 2007, Nucleic Acids Res..
[32] Thomas Peterbauer,et al. Biochemistry and physiology of raffinose family oligosaccharides and galactosyl cyclitols in seeds , 2001, Seed Science Research.
[33] Frédéric Boyer,et al. Ab initio reconstruction of metabolic pathways , 2003, ECCB.
[34] Y. Zhuang,et al. Genetic Modulation of the Overexpression of Tailoring Genes eryK and eryG Leading to the Improvement of Erythromycin A Purity and Production in Saccharopolyspora erythraea Fermentation , 2008, Applied and Environmental Microbiology.
[35] J A Washington,et al. Erythromycin: a microbial and clinical perspective after 30 years of clinical use (2). , 1985, Mayo Clinic proceedings.
[36] Y. Zhang,et al. Structural biology of the purine biosynthetic pathway , 2008, Cellular and Molecular Life Sciences.
[37] G. G. Stokes. "J." , 1890, The New Yale Book of Quotations.
[38] C R Hutchinson,et al. Sequencing and mutagenesis of genes from the erythromycin biosynthetic gene cluster of Saccharopolyspora erythraea that are involved in L-mycarose and D-desosamine production. , 1997, Microbiology.
[39] A W Murray,et al. The biological significance of purine salvage. , 1971, Annual review of biochemistry.
[40] I. Brikun,et al. Engineering of the methylmalonyl-CoA metabolite node of Saccharopolyspora erythraea for increased erythromycin production. , 2007, Metabolic engineering.
[41] Yves Deville,et al. An overview of data models for the analysis of biochemical pathways , 2003, Briefings Bioinform..
[42] D. Fell,et al. The small world inside large metabolic networks , 2000, Proceedings of the Royal Society of London. Series B: Biological Sciences.
[43] Sarbani Pal. A Journey Across the Sequential Development of Macrolides and Ketolides Related to Erythromycin , 2006 .
[44] Kenneth J. Kauffman,et al. Advances in flux balance analysis. , 2003, Current opinion in biotechnology.
[45] Jotun Hein,et al. Rahnuma: hypergraph-based tool for metabolic pathway prediction and network comparison , 2009, Bioinform..
[46] Francisco J. Planes,et al. A critical examination of stoichiometric and path-finding approaches to metabolic pathways , 2008, Briefings Bioinform..
[47] Masanori Arita. The metabolic world of Escherichia coli is not small. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[48] S. Rao,et al. PathMiner: predicting metabolic pathways by heuristic search , 2003, Bioinform..
[49] Arnold L. Demain,et al. The β-lactam antibiotics: past, present, and future , 2004, Antonie van Leeuwenhoek.
[50] Robert H. White,et al. Purine biosynthesis in the domain Archaea without folates or modified folates , 1997, Journal of bacteriology.
[51] G. Sandmann,et al. Carotenoid biosynthesis and biotechnological application. , 2001, Archives of biochemistry and biophysics.
[52] Juho Rousu,et al. BMC Systems Biology BioMed Central Methodology article , 2009 .
[53] Lydia E. Kavraki,et al. Identifying Branched Metabolic Pathways by Merging Linear Metabolic Pathways , 2011, RECOMB.
[54] Rainer Schrader,et al. Metabolic pathway analysis web service (Pathway Hunter Tool at CUBIC) , 2005, Bioinform..