Lung nodule detection in CT images using deep convolutional neural networks

Early detection of lung nodules in thoracic Computed Tomography (CT) scans is of great importance for the successful diagnosis and treatment of lung cancer. Due to improvements in screening technologies, and an increased demand for their use, radiologists are required to analyze an ever increasing amount of image data, which can affect the quality of their diagnoses. Computer-Aided Detection (CADe) systems are designed to assist radiologists in this endeavor. Here, we present a CADe system for the detection of lung nodules in thoracic CT images. Our system is based on (1) the publicly available Lung Image Database Consortium (LIDC) and Image Database Resource Initiative (IDRI) database, which contains 1018 thoracic CT scans with nodules of different shape and size, and (2) a deep Convolutional Neural Network (CNN), which is trained, using the back-propagation algorithm, to extract valuable volumetric features from the input data and detect lung nodules in sub-volumes of CT images. Considering only those test nodules that have been annotated by four radiologists, our CADe system achieves a sensitivity (true positive rate) of 78.9% with 20 false positives (FPs) per scan, or a sensitivity of 71.2% with 10 FPs per scan. This is achieved without using any segmentation or additional FP reduction procedures, both of which are commonly used in other CADe systems. Furthermore, our CADe system is validated on a larger number of lung nodules compared to other studies, which increases the variation in their appearance, and therefore, makes their detection by a CADe system more challenging.

[1]  P. Prorok,et al.  Lung cancer screening with low-dose helical CT: results from the National Lung Screening Trial (NLST) , 2011, Journal of medical screening.

[2]  Thomas Serre,et al.  A quantitative theory of immediate visual recognition. , 2007, Progress in brain research.

[3]  John Tran,et al.  cuDNN: Efficient Primitives for Deep Learning , 2014, ArXiv.

[4]  Lawrence D. Jackel,et al.  Backpropagation Applied to Handwritten Zip Code Recognition , 1989, Neural Computation.

[5]  Geoffrey E. Hinton,et al.  Learning representations by back-propagating errors , 1986, Nature.

[6]  Jürgen Schmidhuber,et al.  Multi-column deep neural networks for image classification , 2012, 2012 IEEE Conference on Computer Vision and Pattern Recognition.

[7]  Geoffrey E. Hinton,et al.  ImageNet classification with deep convolutional neural networks , 2012, Commun. ACM.

[8]  Yoshua Bengio,et al.  Gradient-based learning applied to document recognition , 1998, Proc. IEEE.

[9]  Kenji Suzuki,et al.  Machine Learning in Computer-Aided Diagnosis of the Thorax and Colon in CT: A Survey , 2013, IEICE Trans. Inf. Syst..

[10]  Dumitru Erhan,et al.  Going deeper with convolutions , 2014, 2015 IEEE Conference on Computer Vision and Pattern Recognition (CVPR).

[11]  Y. LeCun,et al.  Learning methods for generic object recognition with invariance to pose and lighting , 2004, Proceedings of the 2004 IEEE Computer Society Conference on Computer Vision and Pattern Recognition, 2004. CVPR 2004..

[12]  Dev P Chakraborty,et al.  A brief history of free-response receiver operating characteristic paradigm data analysis. , 2013, Academic radiology.

[13]  Joseph Ross Mitchell,et al.  An algorithm for noise correction of dual-energy computed tomography material density images , 2014, International Journal of Computer Assisted Radiology and Surgery.

[14]  Samy Bengio,et al.  Torch: a modular machine learning software library , 2002 .

[15]  D. Hubel,et al.  Receptive fields, binocular interaction and functional architecture in the cat's visual cortex , 1962, The Journal of physiology.

[16]  Stephen M. Moore,et al.  The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository , 2013, Journal of Digital Imaging.

[17]  Fei Yin,et al.  Chinese Handwriting Recognition Contest 2010 , 2010, 2010 Chinese Conference on Pattern Recognition (CCPR).

[18]  H. Miller The FROC curve: a representation of the observer's performance for the method of free response. , 1969, The Journal of the Acoustical Society of America.

[19]  Richard C. Pais,et al.  The Lung Image Database Consortium (LIDC) and Image Database Resource Initiative (IDRI): a completed reference database of lung nodules on CT scans. , 2011, Medical physics.

[20]  Temesguen Messay,et al.  A new computationally efficient CAD system for pulmonary nodule detection in CT imagery , 2010, Medical Image Anal..

[21]  Jan Cornelis,et al.  A novel computer-aided lung nodule detection system for CT images. , 2011, Medical physics.

[22]  Patrick J. Grother,et al.  NIST Special Database 19 Handprinted Forms and Characters Database , 1995 .

[23]  A. Jemal,et al.  Cancer statistics, 2015 , 2015, CA: a cancer journal for clinicians.

[24]  Kunihiko Fukushima,et al.  Neocognitron: A self-organizing neural network model for a mechanism of pattern recognition unaffected by shift in position , 1980, Biological Cybernetics.

[25]  L. Deng,et al.  The MNIST Database of Handwritten Digit Images for Machine Learning Research [Best of the Web] , 2012, IEEE Signal Processing Magazine.

[26]  Michael R Hamblin,et al.  CA : A Cancer Journal for Clinicians , 2011 .

[27]  Bradley J Erickson,et al.  The effects of changes in utilization and technological advancements of cross-sectional imaging on radiologist workload. , 2015, Academic radiology.

[28]  M. Masotti,et al.  Computer-aided detection of lung nodules via 3D fast radial transform, scale space representation, and Zernike MIP classification. , 2011, Medical physics.

[29]  John F. Hamilton,et al.  A Free Response Approach To The Measurement And Characterization Of Radiographic Observer Performance , 1977, Other Conferences.

[30]  Michael S. Bernstein,et al.  ImageNet Large Scale Visual Recognition Challenge , 2014, International Journal of Computer Vision.

[31]  Johannes Stallkamp,et al.  The German Traffic Sign Recognition Benchmark: A multi-class classification competition , 2011, The 2011 International Joint Conference on Neural Networks.

[32]  Piergiorgio Cerello,et al.  A novel multithreshold method for nodule detection in lung CT. , 2009, Medical physics.

[33]  Alex Krizhevsky,et al.  Learning Multiple Layers of Features from Tiny Images , 2009 .