BRENDA, the ELIXIR core data resource in 2021: new developments and updates
暂无分享,去创建一个
Dieter Jahn | Antje Chang | Ida Schomburg | Dietmar Schomburg | Sandra Ulbrich | Lisa Jeske | Julia Koblitz | Meina Neumann-Schaal | Julia Hofmann | D. Schomburg | I. Schomburg | A. Chang | D. Jahn | J. Hofmann | Meina Neumann-Schaal | L. Jeske | Julia Koblitz | S. Ulbrich | Antje Chang | Lisa Jeske | Julia Hofmann
[1] Rida Assaf,et al. Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center , 2016, Nucleic Acids Res..
[2] W SEWELL,et al. MEDICAL SUBJECT HEADINGS IN MEDLARS. , 1964, Bulletin of the Medical Library Association.
[3] Antje Chang,et al. BRENDA in 2013: integrated reactions, kinetic data, enzyme function data, improved disease classification: new options and contents in BRENDA , 2012, Nucleic Acids Res..
[4] Antje Chang,et al. The BRENDA Tissue Ontology (BTO): the first all-integrating ontology of all organisms for enzyme sources , 2010, Nucleic Acids Res..
[5] Silvio C. E. Tosatto,et al. InterPro in 2019: improving coverage, classification and access to protein sequence annotations , 2018, Nucleic Acids Res..
[6] Antje Chang,et al. BRENDA in 2017: new perspectives and new tools in BRENDA , 2016, Nucleic Acids Res..
[7] David A. Lee,et al. CATH: comprehensive structural and functional annotations for genome sequences , 2014, Nucleic Acids Res..
[8] Lei Shi,et al. SABIO-RK—database for biochemical reaction kinetics , 2011, Nucleic Acids Res..
[9] Steven E Brenner,et al. SCOPe: Manual Curation and Artifact Removal in the Structural Classification of Proteins - extended Database. , 2017, Journal of molecular biology.
[10] Tanya Z. Berardini,et al. The Gene Ontology (GO) Cellular Component Ontology: integration with SAO (Subcellular Anatomy Ontology) and other recent developments , 2013, J. Biomed. Semant..
[11] Evan Bolton,et al. Database resources of the National Center for Biotechnology Information , 2017, Nucleic Acids Res..
[12] Carol Edwards,et al. Integration of Genomic and Medical Data into a 3D Atlas of Human Anatomy , 2008, MMVR.
[13] P. Shannon,et al. Cytoscape: a software environment for integrated models of biomolecular interaction networks. , 2003, Genome research.
[14] S. Brunak,et al. Predicting subcellular localization of proteins based on their N-terminal amino acid sequence. , 2000, Journal of molecular biology.
[15] Robert Petryszak,et al. The ELIXIR Core Data Resources: fundamental infrastructure for the life sciences , 2020, Bioinformatics.
[16] Antje Chang,et al. BRENDA, AMENDA and FRENDA the enzyme information system: new content and tools in 2009 , 2008, Nucleic Acids Res..
[17] Scott Federhen,et al. The NCBI Taxonomy database , 2011, Nucleic Acids Res..
[18] Antje Chang,et al. BRENDA in 2019: a European ELIXIR core data resource , 2018, Nucleic Acids Res..
[19] David S. Goodsell,et al. RCSB Protein Data Bank: biological macromolecular structures enabling research and education in fundamental biology, biomedicine, biotechnology and energy , 2018, Nucleic Acids Res..
[20] Antje Chang,et al. BRENDA in 2015: exciting developments in its 25th year of existence , 2014, Nucleic Acids Res..
[21] Antje Chang,et al. Development of a classification scheme for disease-related enzyme information , 2011, BMC Bioinformatics.
[22] Dietmar Schomburg,et al. A metabolite-centric view on flux distributions in genome-scale metabolic models , 2013, BMC Systems Biology.
[23] Minoru Kanehisa,et al. KEGG: new perspectives on genomes, pathways, diseases and drugs , 2016, Nucleic Acids Res..
[24] Erik L. L. Sonnhammer,et al. A Hidden Markov Model for Predicting Transmembrane Helices in Protein Sequences , 1998, ISMB.
[25] S. Rosanoff,et al. An update on the Enzyme Portal: an integrative approach for exploring enzyme knowledge , 2017, Protein engineering, design & selection : PEDS.
[26] Dietmar Schomburg,et al. BrEPS 2.0: Optimization of sequence pattern prediction for enzyme annotation , 2017, PloS one.
[27] E. Myers,et al. Basic local alignment search tool. , 1990, Journal of molecular biology.
[28] Andrew G. McDonald,et al. ExplorEnz: the primary source of the IUBMB enzyme list , 2008, Nucleic Acids Res..
[29] David S. Goodsell,et al. The RCSB protein data bank: integrative view of protein, gene and 3D structural information , 2016, Nucleic Acids Res..
[30] Wen J. Li,et al. Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation , 2015, Nucleic Acids Res..
[31] Markus Krummenacker,et al. The MetaCyc database of metabolic pathways and enzymes , 2017, Nucleic acids research.
[32] Leyla Jael García Castro,et al. Biotea: RDFizing PubMed Central in support for the paper as an interface to the Web of Data , 2013, Journal of Biomedical Semantics.
[33] The UniProt Consortium,et al. UniProt: a worldwide hub of protein knowledge , 2018, Nucleic Acids Res..
[34] Christian Ebeling,et al. BacDive – The Bacterial Diversity Metadatabase in 2016 , 2015, Nucleic Acids Res..