Toward a Science of Computational Ethology

[1]  Jonathan Schor,et al.  Detecting Social Actions of Fruit Flies , 2014, ECCV.

[2]  Edward S Boyden,et al.  Addendum: Independent optical excitation of distinct neural populations , 2014, Nature Methods.

[3]  Tsuyoshi Koide,et al.  A male-specific QTL for social interaction behavior in mice mapped with automated pattern detection by a hidden Markov model incorporated into newly developed freeware , 2014, Journal of Neuroscience Methods.

[4]  A. Pérez-Escudero,et al.  idTracker: tracking individuals in a group by automatic identification of unmarked animals , 2014, Nature Methods.

[5]  B. Dickson,et al.  FlyMAD: rapid thermogenetic control of neuronal activity in freely walking Drosophila , 2014, Nature Methods.

[6]  Pietro Perona,et al.  Automated image-based tracking and its application in ecology. , 2014, Trends in ecology & evolution.

[7]  Vassilios Morellas,et al.  Computer Vision Tools for Low-Cost and Noninvasive Measurement of Autism-Related Behaviors in Infants , 2014, Autism research and treatment.

[8]  Patrick Emery,et al.  Studying circadian rhythms in Drosophila melanogaster. , 2014, Methods.

[9]  R. Kerr,et al.  Discovery of Brainwide Neural-Behavioral Maps via Multiscale Unsupervised Structure Learning , 2014, Science.

[10]  David J. Anderson,et al.  A Framework for Studying Emotions across Species , 2014, Cell.

[11]  David J. Anderson,et al.  Optogenetic control of freely behaving adult Drosophila using a red-shifted channelrhodopsin , 2013, Nature Methods.

[12]  Cori Bargmann,et al.  Temporal Responses of C. elegans Chemosensory Neurons Are Preserved in Behavioral Dynamics , 2014, Neuron.

[13]  Stefan R. Pulver,et al.  Independent Optical Excitation of Distinct Neural Populations , 2014, Nature Methods.

[14]  Pietro Perona,et al.  Tachykinin-Expressing Neurons Control Male-Specific Aggressive Arousal in Drosophila , 2014, Cell.

[15]  J Mocco,et al.  Journal of Central Nervous System Disease , 2022 .

[16]  William Bialek,et al.  Mapping the stereotyped behaviour of freely moving fruit flies , 2013, Journal of The Royal Society Interface.

[17]  M. Koganezawa,et al.  Genes and circuits of courtship behaviour in Drosophila males , 2013, Nature Reviews Neuroscience.

[18]  P. Perona,et al.  utomated multi-day tracking of marked mice for the analysis of ocial behaviour , 2013 .

[19]  D. Kleinfeld,et al.  ReaChR: A red-shifted variant of channelrhodopsin enables deep transcranial optogenetic excitation , 2013, Nature Neuroscience.

[20]  Timothy H. Murphy,et al.  Improved methods for chronic light-based motor mapping in mice: automated movement tracking with accelerometers, and chronic EEG recording in a bilateral thin-skull preparation , 2013, Front. Neural Circuits.

[21]  O. Feinerman,et al.  Automated long-term tracking and social behavioural phenotyping of animal colonies within a semi-natural environment , 2013, Nature Communications.

[22]  B. Roth,et al.  Pharmacosynthetics: Reimagining the pharmacogenetic approach , 2013, Brain Research.

[23]  T. Jessell,et al.  Circuits for Grasping: Spinal dI3 Interneurons Mediate Cutaneous Control of Motor Behavior , 2013, Neuron.

[24]  Brian A. Nosek,et al.  Power failure: why small sample size undermines the reliability of neuroscience , 2013, Nature Reviews Neuroscience.

[25]  Kristin Branson,et al.  JAABA: interactive machine learning for automatic annotation of animal behavior , 2013, Nature Methods.

[26]  Laura J. Grundy,et al.  A dictionary of behavioral motifs reveals clusters of genes affecting Caenorhabditis elegans locomotion , 2012, Proceedings of the National Academy of Sciences.

[27]  Siddharth Gaikwad,et al.  Automated high-throughput neurophenotyping of zebrafish social behavior , 2012, Journal of Neuroscience Methods.

[28]  Atulya S R Iyengar,et al.  Automated Quantification of Locomotion, Social Interaction, and Mate Preference in Drosophila Mutants , 2012, Journal of neurogenetics.

[29]  Greg J. Stephens,et al.  Automated Tracking of Animal Posture and Movement during Exploration and Sensory Orientation Behaviors , 2012, PloS one.

[30]  R Clay Reid,et al.  From Functional Architecture to Functional Connectomics , 2012, Neuron.

[31]  Francisco A. Zabala,et al.  A Simple Strategy for Detecting Moving Objects during Locomotion Revealed by Animal-Robot Interactions , 2012, Current Biology.

[32]  Pietro Perona,et al.  Social behavior recognition in continuous video , 2012, 2012 IEEE Conference on Computer Vision and Pattern Recognition.

[33]  H. Tsai,et al.  Image Tracking Study on Courtship Behavior of Drosophila , 2012, PloS one.

[34]  A. Cressant,et al.  Computerized video analysis of social interactions in mice , 2012, Nature Methods.

[35]  Karl Deisseroth,et al.  Optogenetics in Neural Systems , 2011, Neuron.

[36]  Michele Vendruscolo,et al.  The iFly tracking system for an automated locomotor and behavioural analysis of Drosophila melanogaster. , 2011, Integrative biology : quantitative biosciences from nano to macro.

[37]  Andrew W. Fitzgibbon,et al.  Real-time human pose recognition in parts from single depth images , 2011, CVPR 2011.

[38]  Cori Bargmann,et al.  High-content behavioral analysis of Caenorhabditis elegans in precise spatiotemporal chemical environments , 2011, Nature Methods.

[39]  Rex A. Kerr,et al.  High-Throughput Behavioral Analysis in C. elegans , 2011, Nature Methods.

[40]  Johan J Bolhuis,et al.  From songs to synapses: Molecular mechanisms of birdsong memory , 2011, BioEssays : news and reviews in molecular, cellular and developmental biology.

[41]  Salil S. Bidaye,et al.  Neuronal Control of Drosophila Courtship Song , 2011, Neuron.

[42]  P. Perona,et al.  PRIMITIVES FOR HUMANMOTION : A DYNAMICAL APPROACH , 2011 .

[43]  Andreas Krause,et al.  Discriminative Clustering by Regularized Information Maximization , 2010, NIPS.

[44]  Qiang Yang,et al.  A Survey on Transfer Learning , 2010, IEEE Transactions on Knowledge and Data Engineering.

[45]  Thomas Serre,et al.  Automated home-cage behavioural phenotyping of mice. , 2010, Nature communications.

[46]  Michael H. Dickinson,et al.  Multi-camera real-time three-dimensional tracking of multiple flying animals , 2010, Journal of The Royal Society Interface.

[47]  Aravinthan D. T. Samuel,et al.  Navigational Decision Making in Drosophila Thermotaxis , 2010, The Journal of Neuroscience.

[48]  A. Schier,et al.  Monitoring sleep and arousal in zebrafish. , 2010, Methods in cell biology.

[49]  D. Tank,et al.  Intracellular dynamics of hippocampal place cells during virtual navigation , 2009, Nature.

[50]  Daniel A. Levitis,et al.  Behavioural biologists do not agree on what constitutes behaviour , 2009, Animal Behaviour.

[51]  Pietro Perona,et al.  High-throughput Ethomics in Large Groups of Drosophila , 2009, Nature Methods.

[52]  Michael H Dickinson,et al.  Wing and body motion during flight initiation in Drosophila revealed by automated visual tracking , 2009, Journal of Experimental Biology.

[53]  Marcelo A. Wood,et al.  Automated scoring of fear-related behavior using EthoVision software , 2009, Journal of Neuroscience Methods.

[54]  Pietro Perona,et al.  Automated monitoring and analysis of social behavior in Drosophila , 2009, Nature Methods.

[55]  A. Borst.  Drosophila's View on Insect Vision , 2009, Current Biology.

[56]  Julie H. Simpson,et al.  Mapping and manipulating neural circuits in the fly brain. , 2009, Advances in genetics.

[57]  B. Dickson.  Wired for Sex: The Neurobiology of Drosophila Mating Decisions , 2008, Science.

[58]  Stefan R. Pulver,et al.  An internal thermal sensor controlling temperature preference in Drosophila , 2008, Nature.

[59]  Pamela Cosman,et al.  Automated detection and analysis of foraging behavior in Caenorhabditis elegans , 2008, Journal of Neuroscience Methods.

[60]  David Lentink,et al.  Automated visual tracking for studying the ontogeny of zebrafish swimming , 2008, Journal of Experimental Biology.

[61]  K. Svoboda,et al.  Genetic Dissection of Neural Circuits , 2008, Neuron.

[62]  W. Denk,et al.  Imaging in vivo: watching the brain in action , 2008, Nature Reviews Neuroscience.

[63]  Rama Chellappa,et al.  Shape-and-Behavior Encoded Tracking of Bee Dances , 2008, IEEE Transactions on Pattern Analysis and Machine Intelligence.

[64]  M. Heisenberg,et al.  Octopamine in Male Aggression of Drosophila , 2008, Current Biology.

[65]  M. Dickinson,et al.  Performance trade-offs in the flight initiation of Drosophila , 2008, Journal of Experimental Biology.

[66]  Michael H. Dickinson,et al.  A modular display system for insect behavioral neuroscience , 2008, Journal of Neuroscience Methods.

[67]  P. Taghert,et al.  Organization of the Drosophila Circadian Control Circuit , 2008, Current Biology.

[68]  Herman A Dierick,et al.  A method for quantifying aggression in male Drosophila melanogaster , 2007, Nature Protocols.

[69]  Paul W. Sternberg,et al.  Systems level circuit model of C. elegans undulatory locomotion: mathematical modeling and molecular genetics , 2007, Journal of Computational Neuroscience.

[70]  Alex Bateman,et al.  An introduction to hidden Markov models. , 2007, Current protocols in bioinformatics.

[71]  Diego A. Golombek,et al.  An automated tracking system for Caenorhabditis elegans locomotor behavior and circadian studies application , 2007, Journal of Neuroscience Methods.

[72]  Geneticist seeks engineer: must like flies and worms , 2007, Nature Methods.

[73]  Joel Burdick,et al.  Automated Tracking of Multiple C. Elegans , 2006, 2006 International Conference of the IEEE Engineering in Medicine and Biology Society.

[74]  N. Tinbergen.  On aims and methods of Ethology , 2010 .

[75]  Frank Dellaert,et al.  MCMC-based particle filtering for tracking a variable number of interacting targets , 2005, IEEE Transactions on Pattern Analysis and Machine Intelligence.

[76]  Serge J. Belongie,et al.  Behavior recognition via sparse spatio-temporal features , 2005, 2005 IEEE International Workshop on Visual Surveillance and Performance Evaluation of Tracking and Surveillance.

[77]  Serge J. Belongie,et al.  Tracking multiple mouse contours (without too many samples) , 2005, 2005 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR'05).

[78]  Michael H Dickinson,et al.  Closing the loop between neurobiology and flight behavior in Drosophila , 2004, Current Opinion in Neurobiology.

[79]  Paul W. Sternberg,et al.  An imaging system for standardized quantitative analysis of C. elegans behavior , 2004, BMC Bioinformatics.

[80]  H. Williams.  Birdsong and Singing Behavior , 2004, Annals of the New York Academy of Sciences.

[81]  E. Nestler,et al.  Neurobehavioral assessment in the information age , 2004, Nature Neuroscience.

[82]  Tomaso Poggio,et al.  Tracking and chasing in houseflies (Musca) , 1982, Biological Cybernetics.

[83]  T. Collett,et al.  Chasing behaviour of houseflies (Fannia canicularis) , 1974, Journal of comparative physiology.

[84]  Pietro Perona,et al.  Movemes for Modeling Biological Motion Perception , 2004 .

[85]  Monitoring Animal Behavior in the Smart Vivarium , 2004 .

[86]  Pietro Perona,et al.  Decomposition of human motion into dynamics-based primitives with application to drawing tasks , 2003, Autom..

[87]  M. Srinivasan,et al.  Insect behaviour: Motion camouflage in dragonflies , 2003, Nature.

[88]  U. Heberlein,et al.  High-Resolution Analysis of Ethanol-Induced Locomotor Stimulation in Drosophila , 2002, The Journal of Neuroscience.

[89]  E. Kravitz,et al.  Fighting fruit flies: A model system for the study of aggression , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[90]  P. Perona,et al.  Primitives for Human Motion: a Dynamical Approach , 2002 .

[91]  M. Sokolowski,et al.  Drosophila: Genetics meets behaviour , 2001, Nature Reviews Genetics.

[92]  L P Noldus,et al.  EthoVision: A versatile video tracking system for automation of behavioral experiments , 2001, Behavior research methods, instruments, & computers : a journal of the Psychonomic Society, Inc.

[93]  A. J Spink,et al.  The EthoVision video tracking system—A tool for behavioral phenotyping of transgenic mice , 2001, Physiology & Behavior.

[94]  T. Kitamoto.  Conditional modification of behavior in Drosophila by targeted expression of a temperature-sensitive shibire allele in defined neurons. , 2001, Journal of neurobiology.

[95]  Thomas S. Collett,et al.  How do insects use path integration for their navigation? , 2000, Biological Cybernetics.

[96]  R J Full,et al.  How animals move: an integrative view. , 2000, Science.

[97]  David Beymer,et al.  A real-time computer vision system for vehicle tracking and traffic surveillance , 1998 .

[98]  Jitendra Malik,et al.  Tracking people with twists and exponential maps , 1998, Proceedings. 1998 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (Cat. No.98CB36231).

[99]  J. C. Hall.  The mating of a fly. , 1994, Science.

[100]  Junji Yamato,et al.  Recognizing human action in time-sequential images using hidden Markov model , 1992, Proceedings 1992 IEEE Computer Society Conference on Computer Vision and Pattern Recognition.

[101]  T. Insel,et al.  Central administration of oxytocin modulates the infant rat's response to social isolation. , 1991, European journal of pharmacology.

[102]  Martin Egelhaaf,et al.  Visual course control in flies relies on neuronal computation of object and background motion , 1988, Trends in Neurosciences.

[103]  R Wehner,et al.  Path integration in desert ants, Cataglyphis fortis. , 1988, Proceedings of the National Academy of Sciences of the United States of America.

[104]  Y. Bar-Shalom.  Tracking and data association , 1988 .

[105]  K. Götz.  Course-control, metabolism and wing interference during ultralong tethered flight in Drosophila melanogaster , 1987 .

[106]  J. C. Hall,et al.  Germ-line transformation involving DNA from the period locus in Drosophila melanogaster: overlapping genomic fragments that restore circadian and ultradian rhythmicity to per0 and per- mutants. , 1986, Journal of neurogenetics.

[107]  H A Metz,et al.  Continuous-time Markov chains as models for animal behaviour. , 1983, Bulletin of Mathematical Biology.

[108]  J. N. Crawley,et al.  Development and evaluation of a computer-automated color tv tracking system for automatic recording of the social and exploratory behavior of small animals , 1982, Journal of Neuroscience Methods.

[109]  R. W. Siegel,et al.  Conditioned responses in courtship behavior of normal and mutant Drosophila. , 1979, Proceedings of the National Academy of Sciences of the United States of America.

[110]  M. Konishi,et al.  Neural control of behavior. , 1978, Annual review of neuroscience.

[111]  W Reichardt,et al.  Visual control of orientation behaviour in the fly: Part I. A quantitative analysis , 1976, Quarterly Reviews of Biophysics.

[112]  N. Tinbergen,et al.  The Study of Instinct , 1953 .

[113]  N. Tinbergen,et al.  On the Stimulus Situation Releasing the Begging Response in the Newly Hatched Herring Gull Chick (Larus Argentatus Argentatus Pont.) , 1951 .

[114]  Supplementary Material Detecting Actions of Social Fruit Flies , .