On the Gradual Evolution of Complexity and the Sudden Emergence of Complex Features

Evolutionary theory explains the origin of complex organismal features through a combination of reusing and extending information from less-complex traits, and by needing to exploit only one of many unlikely pathways to a viable solution. While the appearance of a new trait may seem sudden, we show that the underlying information associated with each trait evolves gradually. We study this process using digital organisms, self-replicating computer programs that mutate and evolve novel traits, including complex logic operations. When a new complex trait first appears, its proper function immediately requires the coordinated operation of many genomic positions. As the information associated with a trait increases, the probability of its simultaneous introduction drops exponentially, so it is nearly impossible for a significantly complex trait to appear without reusing existing information. We show that the total information stored in the genome increases only marginally when a trait first appears. Furthermore, most of the information associated with a new trait is either correlated with existing traits or co-opted from traits that were lost in conjunction with the appearance of the new trait. Thus, while total genomic information increases incrementally, traits that require much more information can still arise during the evolutionary process.

[1]  Christoph Adami,et al.  Selective pressures on genomes in molecular evolution , 2003, Journal of theoretical biology.

[2]  D. Towle,et al.  Evolution of novel functions: cryptocyanin helps build new exoskeleton in Cancer magister , 2005, Journal of Experimental Biology.

[3]  Charles Ofria,et al.  Avida , 2004, Artificial Life.

[4]  A. Dean,et al.  Protein engineering reveals ancient adaptive replacements in isocitrate dehydrogenase. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[5]  C. Darwin The Origin of Species by Means of Natural Selection, Or, The Preservation of Favoured Races in the Struggle for Life , 1859 .

[6]  Sang Joon Kim,et al.  A Mathematical Theory of Communication , 2006 .

[7]  A. Devries,et al.  Evolution of antifreeze glycoprotein gene from a trypsinogen gene in Antarctic notothenioid fish. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[8]  D. Sanchez,et al.  Generation of evolutionary novelty by functional shift. , 1999, BioEssays : news and reviews in molecular, cellular and developmental biology.

[9]  Christoph Adami,et al.  Design of evolvable computer languages , 2002, IEEE Trans. Evol. Comput..

[10]  A. Bennett,et al.  The Genesis of Species , 1871, Nature.

[11]  Phil Husbands,et al.  Measuring Biological Complexity in Digital Organisms , 2004 .

[12]  J. Piatigorsky,et al.  The recruitment of crystallins: new functions precede gene duplication , 1991, Science.

[13]  Christoph Adami,et al.  Evolution of Differentiated Expression Patterns in Digital Organisms , 1999, ECAL.

[14]  C. Ofria,et al.  Evolution of digital organisms at high mutation rates leads to survival of the flattest , 2001, Nature.

[15]  D. Nilsson,et al.  A pessimistic estimate of the time required for an eye to evolve , 1994, Proceedings of the Royal Society of London. Series B: Biological Sciences.

[16]  C. E. SHANNON,et al.  A mathematical theory of communication , 1948, MOCO.

[17]  Debashish Bhattacharya,et al.  Evolution of a novel function: nutritive milk in the viviparous cockroach, Diploptera punctata , 2004, Evolution & development.

[18]  J. Oakeshott,et al.  A single amino acid substitution converts a carboxylesterase to an organophosphorus hydrolase and confers insecticide resistance on a blowfly. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[19]  E. Mayr,et al.  On the evolution of photoreceptors and eyes , 1977 .

[20]  T. Goldsmith Optimization, Constraint, and History in the Evolution of Eyes , 1990, The Quarterly Review of Biology.

[21]  A. Gray,et al.  I. THE ORIGIN OF SPECIES BY MEANS OF NATURAL SELECTION , 1963 .

[22]  C. Adami,et al.  Evolution of Biological Complexity , 2000, Proc. Natl. Acad. Sci. USA.

[23]  Marta Cascante,et al.  The puzzle of the Krebs citric acid cycle: Assembling the pieces of chemically feasible reactions, and opportunism in the design of metabolic pathways during evolution , 1996, Journal of Molecular Evolution.

[24]  Robert T. Pennock,et al.  The evolutionary origin of complex features , 2003, Nature.