Evolution of Genome Size in Asexual Digital Organisms
暂无分享,去创建一个
Christoph Adami | Thomas LaBar | C. Adami | Aditi Gupta | Thomas LaBar | Miriam Miyagi | Aditi Gupta | Miriam Miyagi
[1] Theodore Garland,et al. Did Genetic Drift Drive Increases in Genome Complexity? , 2010, PLoS Genetics.
[2] Howard Ochman,et al. The consequences of genetic drift for bacterial genome complexity. , 2009, Genome research.
[3] J. Mattick,et al. The relationship between non-protein-coding DNA and eukaryotic complexity. , 2007, BioEssays : news and reviews in molecular, cellular and developmental biology.
[4] Charles Ofria,et al. Avida , 2004, Artificial Life.
[5] R. S. Harris,et al. Transient and heritable mutators in adaptive evolution in the lab and in nature. , 1998, Genetics.
[6] R. Lenski,et al. Diminishing returns from mutation supply rate in asexual populations. , 1999, Science.
[7] Jody L. Miller,et al. Get a life! , 2005, Fortune.
[8] Philipp Kapranov,et al. Pseudogenes in the ENCODE regions: consensus annotation, analysis of transcription, and evolution. , 2007, Genome research.
[9] D. Petrov,et al. Evidence for DNA loss as a determinant of genome size. , 2000, Science.
[10] David Metzgar,et al. Evidence for the Adaptive Evolution of Mutation Rates , 2000, Cell.
[11] C. Adami. Digital genetics: unravelling the genetic basis of evolution , 2006, Nature Reviews Genetics.
[12] C. Adami,et al. Evolution of Biological Complexity , 2000, Proc. Natl. Acad. Sci. USA.
[13] N. Moran,et al. Extreme genome reduction in symbiotic bacteria , 2011, Nature Reviews Microbiology.
[14] P. Pandolfi,et al. A coding-independent function of gene and pseudogene mRNAs regulates tumour biology , 2010, Nature.
[15] C. Ofria,et al. Evolution of digital organisms at high mutation rates leads to survival of the flattest , 2001, Nature.
[16] Alexei J Drummond,et al. Phylogenetic evidence for deleterious mutation load in RNA viruses and its contribution to viral evolution. , 2007, Molecular biology and evolution.
[17] F. Taddei,et al. Costs and Benefits of High Mutation Rates: Adaptive Evolution of Bacteria in the Mouse Gut , 2001, Science.
[18] C. Ofria,et al. Adaptive Radiation from Resource Competition in Digital Organisms , 2004, Science.
[19] T. Gregory,et al. Insertion-deletion biases and the evolution of genome size. , 2004, Gene.
[20] M. Lynch. Streamlining and simplification of microbial genome architecture. , 2006, Annual review of microbiology.
[21] T. Gregory,et al. The Case for Junk DNA , 2014, PLoS genetics.
[22] S. Elena,et al. Shrinkage of Genome Size in a Plant RNA Virus upon Transfer of an Essential Viral Gene into the Host Genome , 2014, Genome biology and evolution.
[23] C. Titus Brown,et al. Evolutionary Learning in the 2D Artificial Life System "Avida" , 1994, adap-org/9405003.
[24] David M. Bryson,et al. Coevolution Drives the Emergence of Complex Traits and Promotes Evolvability , 2014, PLoS biology.
[25] T. Johnson,et al. The evolution of mutation rates: separating causes from consequences , 2000, BioEssays : news and reviews in molecular, cellular and developmental biology.
[26] C. Ofria,et al. Genome complexity, robustness and genetic interactions in digital organisms , 1999, Nature.
[27] M. Kimura,et al. The mutational load with epistatic gene interactions in fitness. , 1966, Genetics.
[28] R. Sanjuán,et al. Viral Mutation Rates , 2010, Journal of Virology.
[29] J. Drake,et al. Mutation rates among RNA viruses. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[30] Christoph Adami,et al. Viral evolution under the pressure of an adaptive immune system: Optimal mutation rates for viral escape , 2002, Complex..
[31] G. Beslon,et al. Evolutionary coupling between the deleteriousness of gene mutations and the amount of non-coding sequences. , 2007, Journal of theoretical biology.
[32] Robert T. Pennock. Models, simulations, instantiations, and evidence: the case of digital evolution , 2007, J. Exp. Theor. Artif. Intell..
[33] Edward C Holmes,et al. Error thresholds and the constraints to RNA virus evolution , 2003, Trends in Microbiology.
[34] Guillaume Beslon,et al. Self-adaptation of Genome Size in Artificial Organisms , 2005, ECAL.
[35] C. Adami,et al. Differentially-Expressed Pseudogenes in HIV-1 Infection , 2015, Viruses.
[36] R. Lenski,et al. Microbial genetics: Evolution experiments with microorganisms: the dynamics and genetic bases of adaptation , 2003, Nature Reviews Genetics.
[37] Santiago F. Elena,et al. Experimental Evolution of Pseudogenization and Gene Loss in a Plant RNA Virus , 2013, Molecular biology and evolution.
[38] Axel Imhof,et al. Dynamics of adaptive microevolution of hypermutable Pseudomonas aeruginosa during chronic pulmonary infection in patients with cystic fibrosis. , 2009, The Journal of infectious diseases.
[39] A. Vinogradov. Evolution of genome size: multilevel selection, mutation bias or dynamical chaos? , 2004, Current opinion in genetics & development.
[40] G. Beslon,et al. A long-term evolutionary pressure on the amount of noncoding DNA. , 2007, Molecular biology and evolution.
[41] Robert T. Pennock,et al. The evolutionary origin of complex features , 2003, Nature.
[42] Rafael Sanjuán,et al. The effect of genetic robustness on evolvability in digital organisms , 2008, BMC Evolutionary Biology.
[43] Christoph Endres,et al. Introduction to Artificial Life , 2000, Künstliche Intell..
[44] M. Lynch. The frailty of adaptive hypotheses for the origins of organismal complexity , 2007, Proceedings of the National Academy of Sciences.
[45] R. B. Azevedo,et al. On the Immortality of Television Sets: “Function” in the Human Genome According to the Evolution-Free Gospel of ENCODE , 2013, Genome biology and evolution.
[46] Santiago F. Elena,et al. Adaptive Value of High Mutation Rates of RNA Viruses: Separating Causes from Consequences , 2005, Journal of Virology.
[47] Aaron P. Wagner,et al. The Roles of Standing Genetic Variation and Evolutionary History in Determining the Evolvability of Anti-Predator Strategies , 2014, bioRxiv.
[48] Michael T. McManus,et al. Pervasive Transcription of the Human Genome Produces Thousands of Previously Unidentified Long Intergenic Noncoding RNAs , 2013, PLoS genetics.
[49] Charles Ofria,et al. Natural Selection Fails to Optimize Mutation Rates for Long-Term Adaptation on Rugged Fitness Landscapes , 2008, ECAL.
[50] D. Bartel,et al. lincRNAs: Genomics, Evolution, and Mechanisms , 2013, Cell.
[51] M. Lynch,et al. The Origins of Genome Complexity , 2003, Science.
[52] M. Lynch. Evolution of the mutation rate. , 2010, Trends in genetics : TIG.
[53] J. Drake. A constant rate of spontaneous mutation in DNA-based microbes. , 1991, Proceedings of the National Academy of Sciences of the United States of America.
[54] J. Mattick,et al. The evolution of controlled multitasked gene networks: the role of introns and other noncoding RNAs in the development of complex organisms. , 2001, Molecular biology and evolution.
[55] Guillaume Beslon,et al. In silico experimental evolution: a tool to test evolutionary scenarios , 2013, BMC Bioinformatics.
[56] Dmitri A Petrov,et al. Mutational equilibrium model of genome size evolution. , 2002, Theoretical population biology.
[57] Michael J. Wiser,et al. Mutation rate dynamics in a bacterial population reflect tension between adaptation and genetic load , 2012, Proceedings of the National Academy of Sciences.
[58] Howard Ochman,et al. Deletional Bias across the Three Domains of Life , 2009, Genome biology and evolution.
[59] Liran Carmel,et al. Origin and evolution of spliceosomal introns , 2012, Biology Direct.
[60] The evolution of mutation rate in an antagonistic coevolutionary model with maternal transmission of parasites , 2013, Proceedings of the Royal Society B: Biological Sciences.