Design of novel protein building modules and modular architectures.
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[1] David Baker,et al. Exploring the repeat protein universe through computational protein design , 2015, Nature.
[2] R. Kolodny,et al. Complex evolutionary footprints revealed in an analysis of reused protein segments of diverse lengths , 2017, Proceedings of the National Academy of Sciences.
[3] D. Baker,et al. Global analysis of protein folding using massively parallel design, synthesis, and testing , 2017, Science.
[4] Andrew C Doxey,et al. Modular evolution and the origins of symmetry: reconstruction of a three-fold symmetric globular protein. , 2012, Structure.
[5] Z. X. Wang,et al. A re-estimation for the total numbers of protein folds and superfamilies. , 1998, Protein engineering.
[6] Robert A. Langan,et al. De novo design of protein homo-oligomers with modular hydrogen-bond network–mediated specificity , 2016, Science.
[7] W. Gilbert,et al. The exon theory of genes. , 1987, Cold Spring Harbor symposia on quantitative biology.
[8] Timothy W. Craven,et al. A Miniature Protein Stabilized by a Cation-π Interaction Network. , 2016, Journal of the American Chemical Society.
[9] D. Baker,et al. Design of ordered two-dimensional arrays mediated by noncovalent protein-protein interfaces , 2015, Science.
[10] B. Höcker,et al. Mimicking enzyme evolution by generating new (betaalpha)8-barrels from (betaalpha)4-half-barrels. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[11] Kevin W Plaxco,et al. Contact order revisited: Influence of protein size on the folding rate , 2003, Protein science : a publication of the Protein Society.
[12] D. Baker,et al. The coming of age of de novo protein design , 2016, Nature.
[13] Ben M. Webb,et al. Design of a single-chain polypeptide tetrahedron assembled from coiled-coil segments , 2013, Nature chemical biology.
[14] Richard B. Sessions,et al. Computational design of water-soluble α-helical barrels , 2014, Science.
[15] David A. Lee,et al. CATH: an expanded resource to predict protein function through structure and sequence , 2016, Nucleic Acids Res..
[16] M. Go. Correlation of DNA exonic regions with protein structural units in haemoglobin , 1981, Nature.
[17] D. Baker,et al. Accurate computational design of multipass transmembrane proteins , 2018, Science.
[18] Robert A. Langan,et al. Programmable design of orthogonal protein heterodimers , 2019 .
[19] D. Baker,et al. Contact order, transition state placement and the refolding rates of single domain proteins. , 1998, Journal of molecular biology.
[20] F. Arnold,et al. Innovation by Evolution: Bringing New Chemistry to Life (Nobel Lecture). , 2019, Angewandte Chemie.
[21] David Baker,et al. What has de novo protein design taught us about protein folding and biophysics? , 2019, Protein science : a publication of the Protein Society.
[22] Kenneth Evan Thompson,et al. SYNZIP Protein Interaction Toolbox: in Vitro and in Vivo Specifications of Heterospecific Coiled-Coil Interaction Domains , 2012, ACS synthetic biology.
[23] S J de Souza,et al. Origin of genes. , 1997, Proceedings of the National Academy of Sciences of the United States of America.
[24] Noah Linden,et al. A de novo peptide hexamer with a mutable channel , 2011, Nature chemical biology.
[25] W. Chiu,et al. Designer nanoscale DNA assemblies programmed from the top down , 2016, Science.
[26] D. Baker,et al. De novo design of a four-fold symmetric TIM-barrel protein with atomic-level accuracy , 2015, Nature chemical biology.
[27] David Baker,et al. Accurate de novo design of hyperstable constrained peptides , 2016, Nature.
[28] Hiroki Noguchi,et al. Computational design of a self-assembling symmetrical β-propeller protein , 2014, Proceedings of the National Academy of Sciences.
[29] Fabio Lapenta,et al. Coiled coil protein origami: from modular design principles towards biotechnological applications. , 2018, Chemical Society reviews.
[30] R. Pappu,et al. Covalently-assembled single-chain protein nanostructures with ultra-high stability , 2019, Nature Communications.
[31] D. Baker,et al. Principles for designing ideal protein structures , 2012, Nature.
[32] Derek N. Woolfson,et al. Installing hydrolytic activity into a completely de novo protein framework. , 2016, Nature chemistry.
[33] J. Richardson,et al. De novo design, expression, and characterization of Felix: a four-helix bundle protein of native-like sequence. , 1990, Science.
[34] Derek N Woolfson,et al. Engineering protein stability with atomic precision in a monomeric miniprotein. , 2017, Nature chemical biology.
[35] C. Ponting,et al. On the evolution of protein folds: are similar motifs in different protein folds the result of convergence, insertion, or relics of an ancient peptide world? , 2001, Journal of structural biology.
[36] D. Baker,et al. Prediction of local structure in proteins using a library of sequence-structure motifs. , 1998, Journal of molecular biology.
[37] A. Urvoas,et al. Alpha repeat proteins (αRep) as expression and crystallization helpers. , 2017, Journal of structural biology.
[38] B. Kuhlman,et al. Design of structurally distinct proteins using strategies inspired by evolution , 2016, Science.
[39] David Baker,et al. Accurate design of co-assembling multi-component protein nanomaterials , 2014, Nature.
[40] Helena Gradišar,et al. Design principles for rapid folding of knotted DNA nanostructures , 2016, Nature Communications.
[41] Vikram Khipple Mulligan,et al. De Novo Design of Bioactive Protein Switches , 2019, Nature.
[42] D. Woolfson. The design of coiled-coil structures and assemblies. , 2005, Advances in protein chemistry.
[43] Alessandro Laio,et al. Exploring the Universe of Protein Structures beyond the Protein Data Bank , 2010, PLoS Comput. Biol..
[44] Gevorg Grigoryan,et al. Tertiary alphabet for the observable protein structural universe , 2016, Proceedings of the National Academy of Sciences.
[45] D. Baker,et al. Control over overall shape and size in de novo designed proteins , 2015, Proceedings of the National Academy of Sciences.
[46] C. Chothia. One thousand families for the molecular biologist , 1992, Nature.
[47] Tanmay A M Bharat,et al. A βα-barrel built by the combination of fragments from different folds , 2008, Proceedings of the National Academy of Sciences.
[48] Ajasja Ljubetič,et al. Design of coiled-coil protein-origami cages that self-assemble in vitro and in vivo , 2017, Nature Biotechnology.
[49] D. Baker,et al. Computational Design of Self-Assembling Protein Nanomaterials with Atomic Level Accuracy , 2012, Science.
[50] S. Balaji,et al. Internal symmetry in protein structures: prevalence, functional relevance and evolution. , 2015, Current opinion in structural biology.
[51] A. Keating,et al. Modular assembly of a protein nanotriangle using orthogonally interacting coiled coils , 2017, Scientific Reports.
[52] Aimee L Boyle,et al. Construction of a Chassis for a Tripartite Protein-Based Molecular Motor , 2017, ACS synthetic biology.
[53] Gaohua Liu,et al. Principles for designing proteins with cavities formed by curved β sheets , 2017, Science.
[54] William R Taylor,et al. Probing the "dark matter" of protein fold space. , 2009, Structure.
[55] Steven E. Brenner,et al. SCOPe: Structural Classification of Proteins—extended, integrating SCOP and ASTRAL data and classification of new structures , 2013, Nucleic Acids Res..
[56] D. Baker,et al. De novo design of a non-local beta-sheet protein with high stability and accuracy , 2018 .
[57] Sarah A. Teichmann,et al. An insight into domain combinations , 2001, ISMB.
[58] Baldomero Oliva,et al. A supersecondary structure library and search algorithm for modeling loops in protein structures , 2006, Nucleic acids research.
[59] William Sheffler,et al. De novo design of a fluorescence-activating β-barrel , 2018, Nature.
[60] L. Regan,et al. Characterization of a helical protein designed from first principles. , 1988, Science.
[61] A. Urvoas,et al. Alpha-helicoidal HEAT-like Repeat Proteins (αRep) Selected as Interactors of HIV-1 Nucleocapsid Negatively Interfere with Viral Genome Packaging and Virus Maturation , 2017, Scientific Reports.
[62] J. Söding,et al. A vocabulary of ancient peptides at the origin of folded proteins , 2015, eLife.
[63] M. A. García,et al. Assembly of designed protein scaffolds into monolayers for nanoparticle patterning. , 2016, Colloids and surfaces. B, Biointerfaces.
[64] David Baker,et al. Accurate design of megadalton-scale two-component icosahedral protein complexes , 2016, Science.
[65] C DeLisi,et al. Estimating the number of protein folds. , 1998, Journal of molecular biology.
[66] T. Yeates,et al. Principles for designing ordered protein assemblies. , 2012, Trends in cell biology.
[67] David Baker,et al. Design of a hyperstable 60-subunit protein icosahedron , 2016, Nature.