SUPERFAMILY—sophisticated comparative genomics, data mining, visualization and phylogeny
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Cyrus Chothia | Derek Wilson | Martin Madera | Christine Vogel | Julian Gough | Ralph Pethica | Yiduo Zhou | Charles Talbot | C. Chothia | M. Madera | J. Gough | C. Vogel | Derek Wilson | Ralph Pethica | Yiduo Zhou | Charles Talbot
[1] Sean R. Eddy,et al. Profile hidden Markov models , 1998, Bioinform..
[2] Sébastien Carrère,et al. The ProDom database of protein domain families: more emphasis on 3D , 2004, Nucleic Acids Res..
[3] Lars Backman,et al. A Comparative and Phylogenetic Analysis of the α-Actinin Rod Domain , 2007 .
[4] Peer Bork,et al. SMART 5: domains in the context of genomes and networks , 2005, Nucleic Acids Res..
[5] J. Pereira-Leal,et al. Multiple domain insertions and losses in the evolution of the Rab prenylation complex , 2007, BMC Evolutionary Biology.
[6] S. Lewis,et al. The generic genome browser: a building block for a model organism system database. , 2002, Genome research.
[7] Owen White,et al. The TIGRFAMs database of protein families , 2003, Nucleic Acids Res..
[8] Burkhard Rost,et al. The PredictProtein server , 2003, Nucleic Acids Res..
[9] Andreas Prlic,et al. Ensembl 2007 , 2006, Nucleic Acids Res..
[10] J. Kalinowski,et al. The LacI/GalR family transcriptional regulator UriR negatively controls uridine utilization of Corynebacterium glutamicum by binding to catabolite-responsive element (cre)-like sequences. , 2008, Microbiology.
[11] M. Ashburner,et al. Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.
[12] Sean R. Eddy,et al. The Distributed Annotation System , 2001, BMC Bioinformatics.
[13] Leszek Rychlewski,et al. FFAS03: a server for profile–profile sequence alignments , 2005, Nucleic Acids Res..
[14] C. Chothia,et al. Evolution of the Protein Repertoire , 2003, Science.
[15] Robert S. Ledley,et al. PIRSF: family classification system at the Protein Information Resource , 2004, Nucleic Acids Res..
[16] Tanya Z. Berardini,et al. The Arabidopsis Information Resource (TAIR): gene structure and function annotation , 2007, Nucleic Acids Res..
[17] Richard Hughey,et al. Hidden Markov models for detecting remote protein homologies , 1998, Bioinform..
[18] S. Teichmann,et al. The relationship between domain duplication and recombination. , 2005, Journal of molecular biology.
[19] Cyrus Chothia,et al. Protein Family Expansions and Biological Complexity , 2006, PLoS Comput. Biol..
[20] Christine A. Orengo,et al. Predicting Protein Function with Hierarchical Phylogenetic Profiles: The Gene3D Phylo-Tuner Method Applied to Eukaryotic Genomes , 2007, PLoS Comput. Biol..
[21] Sarah A. Teichmann,et al. DBD––taxonomically broad transcription factor predictions: new content and functionality , 2007, Nucleic Acids Res..
[22] Amos Bairoch,et al. The PROSITE database , 2005, Nucleic Acids Res..
[23] J. Pereira-Leal,et al. The Ypt/Rab Family and the Evolution of Trafficking in Fungi , 2008, Traffic.
[24] Cyrus Chothia,et al. The SUPERFAMILY database in 2007: families and functions , 2006, Nucleic Acids Res..
[25] Robert D. Finn,et al. New developments in the InterPro database , 2007, Nucleic Acids Res..
[26] Tim J. P. Hubbard,et al. Data growth and its impact on the SCOP database: new developments , 2007, Nucleic Acids Res..
[27] David L. Steffen,et al. The genome of the social amoeba Dictyostelium discoideum , 2005, Nature.
[28] Robert D. Finn,et al. Pfam: clans, web tools and services , 2005, Nucleic Acids Res..
[29] Hiroaki Kitano,et al. The PANTHER database of protein families, subfamilies, functions and pathways , 2004, Nucleic Acids Res..
[30] Martin Madera,et al. Profile Comparer: a program for scoring and aligning profile hidden Markov models , 2008, Bioinform..
[31] Terri K. Attwood,et al. PRINTS and its automatic supplement, prePRINTS , 2003, Nucleic Acids Res..
[32] Patrice Koehl,et al. The ASTRAL Compendium in 2004 , 2003, Nucleic Acids Res..
[33] Hiroyuki Ogata,et al. Metagrowth: a new resource for the building of metabolic hypotheses in microbiology , 2004, Nucleic Acids Res..
[34] V. Ingram. The evolution of a protein. , 1962, Federation proceedings.
[35] David A. Lee,et al. Gene3D: modelling protein structure, function and evolution , 2005, Nucleic Acids Res..
[36] Lars Backman,et al. A comparative and phylogenetic analysis of the alpha-actinin rod domain. , 2007, Molecular biology and evolution.
[37] E. Myers,et al. Basic local alignment search tool. , 1990, Journal of molecular biology.
[38] R. Doolittle,et al. Phylogeny determined by protein domain content. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[39] T. N. Bhat,et al. The Protein Data Bank , 2000, Nucleic Acids Res..
[40] Gustavo Caetano-Anollés,et al. Reductive evolution of architectural repertoires in proteomes and the birth of the tripartite world. , 2007, Genome research.
[41] Michal Linial,et al. Connect the dots: exposing hidden protein family connections from the entire sequence tree , 2008, ECCB.
[42] S. Teichmann,et al. Supra-domains: evolutionary units larger than single protein domains. , 2004, Journal of molecular biology.