An Application for Efficient Error-Free Labeling of Medical Images

In this chapter we describe an application for efficient error-free labeling of medical images. In this scenario, the compilation of a complete training set for building a realistic model of a given class of samples is not an easy task, making the process tedious and time consuming. For this reason, there is a need for interactive labeling applications that minimize the effort of the user while providing error-free labeling. We propose a new algorithm that is based on data similarity in feature space. This method actively explores data in order to find the best label-aligned clustering and exploits it to reduce the labeler effort, that is measured by the number of “clicks. Moreover, error-free labeling is guaranteed by the fact that all data and their labels proposals are visually revised by en expert.

[1]  Jong Hyo Kim,et al.  Active Blood Detection in a High Resolution Capsule Endoscopy using Color Spectrum Transformation , 2008, 2008 International Conference on BioMedical Engineering and Informatics.

[2]  Andrew McCallum,et al.  Dynamic conditional random fields: factorized probabilistic models for labeling and segmenting sequence data , 2004, J. Mach. Learn. Res..

[3]  Yuandong Tian,et al.  A Face Annotation Framework with Partial Clustering and Interactive Labeling , 2007, 2007 IEEE Conference on Computer Vision and Pattern Recognition.

[4]  Peter Ingwersen,et al.  Developing a Test Collection for the Evaluation of Integrated Search , 2010, ECIR.

[5]  H. Sebastian Seung,et al.  Selective Sampling Using the Query by Committee Algorithm , 1997, Machine Learning.

[6]  R. Doraiswami,et al.  Real-time image processing system for endoscopic applications , 2003, CCECE 2003 - Canadian Conference on Electrical and Computer Engineering. Toward a Caring and Humane Technology (Cat. No.03CH37436).

[7]  Xiaowei Xu,et al.  Representative Sampling for Text Classification Using Support Vector Machines , 2003, ECIR.

[8]  Burr Settles,et al.  Active Learning Literature Survey , 2009 .

[9]  Yoshito Mekada,et al.  Automatic detection of informative frames from wireless capsule endoscopy images , 2010, Medical Image Anal..

[10]  Fernando Vilariño,et al.  Intestinal Motility Assessment With Video Capsule Endoscopy: Automatic Annotation of Phasic Intestinal Contractions , 2010, IEEE Transactions on Medical Imaging.

[11]  Andrew McCallum,et al.  Employing EM and Pool-Based Active Learning for Text Classification , 1998, ICML.

[12]  Tao Xiang,et al.  Finding Rare Classes: Active Learning with Generative and Discriminative Models , 2013, IEEE Transactions on Knowledge and Data Engineering.

[13]  Joost N. Kok Machine Learning: ECML 2007, 18th European Conference on Machine Learning, Warsaw, Poland, September 17-21, 2007, Proceedings , 2007, ECML.

[14]  Andrew J. Davison,et al.  Active Matching , 2008, ECCV.

[15]  Jordi Vitrià,et al.  Interactive Labeling of WCE Images , 2011, IbPRIA.

[16]  Robert C. Holte,et al.  Decision Tree Instability and Active Learning , 2007, ECML.

[17]  Petia Radeva,et al.  New insight into intestinal motor function via noninvasive endoluminal image analysis. , 2008, Gastroenterology.

[18]  Paul N. Bennett,et al.  Dual Strategy Active Learning , 2007, ECML.

[19]  Ludmila I. Kuncheva,et al.  Combining Pattern Classifiers: Methods and Algorithms , 2004 .

[20]  Daphne Koller,et al.  Support Vector Machine Active Learning with Applications to Text Classification , 2000, J. Mach. Learn. Res..

[21]  Subhash C. Bagui,et al.  Combining Pattern Classifiers: Methods and Algorithms , 2005, Technometrics.

[22]  Shaogang Gong,et al.  Finding Rare Classes: Adapting Generative and Discriminative Models in Active Learning , 2011, PAKDD.

[23]  J. H. Ward Hierarchical Grouping to Optimize an Objective Function , 1963 .

[24]  Helge J. Ritter,et al.  Interactive image data labeling using self-organizing maps in an augmented reality scenario , 2005, Neural Networks.

[25]  Arnold W. M. Smeulders,et al.  Active learning using pre-clustering , 2004, ICML.

[26]  David W. Jacobs,et al.  Active image clustering: Seeking constraints from humans to complement algorithms , 2012, 2012 IEEE Conference on Computer Vision and Pattern Recognition.

[27]  Sanjoy Dasgupta,et al.  Hierarchical sampling for active learning , 2008, ICML '08.

[28]  Fernando Vilariño,et al.  Automatic Discrimination of Duodenum in Wireless Capsule Video Endoscopy , 2009 .

[29]  Miguel Tavares Coimbra,et al.  MPEG-7 Visual Descriptors—Contributions for Automated Feature Extraction in Capsule Endoscopy , 2006, IEEE Transactions on Circuits and Systems for Video Technology.

[30]  S Seguí,et al.  Functional gut disorders or disordered gut function? Small bowel dysmotility evidenced by an original technique , 2012, Neurogastroenterology and motility : the official journal of the European Gastrointestinal Motility Society.

[31]  Qiang Ji,et al.  Active Image Labeling and Its Application to Facial Action Labeling , 2008, ECCV.