Real‐Time Tomographic Reconstruction through CPU + GPU Coprocessing
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Emmanuel Jeannot | Ester M. Garzón | Julius Žilinskas | José Ignacio Agulleiro | F. Vázquez | Jose J. Fernandez | E. M. Garzón | E. Jeannot | José-Jesús Fernández | J. Agulleiro | J. Žilinskas | F. Vázquez
[1] Steven G. Johnson,et al. The Design and Implementation of FFTW3 , 2005, Proceedings of the IEEE.
[2] G A Perkins,et al. Electron tomography of large, multicomponent biological structures. , 1997, Journal of structural biology.
[3] Inmaculada García,et al. Three-dimensional reconstruction of cellular structures by electron microscope tomography and parallel computing , 2004, J. Parallel Distributed Comput..
[4] J I Agulleiro,et al. Hybrid computing: CPU+GPU co-processing and its application to tomographic reconstruction. , 2012, Ultramicroscopy.
[5] José-Jesús Fernández,et al. Evaluation of a Multicore-Optimized Implementation for Tomographic Reconstruction , 2012, PloS one.
[6] Wolfgang Baumeister,et al. Three-Dimensional Structure of Herpes Simplex Virus from Cryo-Electron Tomography , 2003, Science.
[7] V. Lučić,et al. Structural studies by electron tomography: from cells to molecules. , 2005, Annual review of biochemistry.
[8] Reiner Hegerl,et al. Cryo-electron tomography of biological specimens , 2006, IEEE Signal Processing Magazine.
[9] R. Marabini,et al. Image processing and 3-D reconstruction in electron microscopy , 2006, IEEE Signal Processing Magazine.
[10] Francisco Vázquez,et al. A new approach for sparse matrix vector product on NVIDIA GPUs , 2011, Concurr. Comput. Pract. Exp..
[11] Wolfgang Baumeister,et al. Cryo-electron tomography of vaccinia virus. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[12] J. McIntosh,et al. The Molecular Architecture of Axonemes Revealed by Cryoelectron Tomography , 2006, Science.
[13] E M Garzón,et al. A matrix approach to tomographic reconstruction and its implementation on GPUs. , 2010, Journal of structural biology.
[14] J I Agulleiro,et al. Vectorization with SIMD extensions speeds up reconstruction in electron tomography. , 2010, Journal of structural biology.
[15] John W Sedat,et al. UCSF tomography: an integrated software suite for real-time electron microscopic tomographic data collection, alignment, and reconstruction. , 2007, Journal of structural biology.
[16] Sabine Pruggnaller,et al. Performance evaluation of image processing algorithms on the GPU. , 2008, Journal of structural biology.
[17] José-Jesús Fernández,et al. Fast tomographic reconstruction on multicore computers , 2011, Bioinform..
[18] John W Sedat,et al. A distributed multi-GPU system for high speed electron microscopic tomographic reconstruction. , 2011, Ultramicroscopy.
[19] Friedrich Förster,et al. Snapshots of nuclear pore complexes in action captured by cryo-electron tomography , 2007, Nature.
[20] Emilio Luque,et al. Analytical Performance Prediction for Iterative Reconstruction Techniques in Electron Tomography of Biological Structures , 2010, Int. J. High Perform. Comput. Appl..
[21] W. Baumeister,et al. Macromolecular Architecture in Eukaryotic Cells Visualized by Cryoelectron Tomography , 2002, Science.
[22] José-Jesús Fernández,et al. Efficient parallel implementation of iterative reconstruction algorithms for electron tomography , 2008, J. Parallel Distributed Comput..
[23] Inmaculada García,et al. Electron tomography of complex biological specimens on the Grid , 2007, Future Gener. Comput. Syst..
[24] M. Radermacher. Weighted Back-Projection Methods , 2007 .
[25] Francisco Vázquez,et al. Matrix Implementation of Simultaneous Iterative Reconstruction Technique (SIRT) on GPUs , 2011, Comput. J..
[26] Francisco Vázquez,et al. Automatic tuning of the sparse matrix vector product on GPUs based on the ELLR-T approach , 2012, Parallel Comput..
[27] David Lee,et al. The Telescience Portal for advanced tomography applications , 2003, J. Parallel Distributed Comput..
[28] D. Agard,et al. Three-dimensional structure of basal body triplet revealed by electron cryo-tomography , 2011, The EMBO journal.
[29] Saleh Omran,et al. A Review of SIMD Multimedia Extensions and their Usage in Scientific and Engineering Applications , 2008, Comput. J..
[30] Wei Xu,et al. High-performance iterative electron tomography reconstruction with long-object compensation using graphics processing units (GPUs). , 2010, Journal of structural biology.
[31] J J Fernández,et al. High performance computing in structural determination by electron cryomicroscopy. , 2008, Journal of structural biology.
[32] Zhiyong Liu,et al. High-performance blob-based iterative three-dimensional reconstruction in electron tomography using multi-GPUs , 2012, BMC Bioinformatics.
[33] J. McIntosh,et al. FcRn-mediated antibody transport across epithelial cells revealed by electron tomography , 2008, Nature.
[34] Achilleas S Frangakis,et al. Implementation and performance evaluation of reconstruction algorithms on graphics processors. , 2007, Journal of structural biology.
[35] K J Batenburg,et al. Performance improvements for iterative electron tomography reconstruction using graphics processing units (GPUs). , 2011, Journal of structural biology.
[36] Zhiyong Liu,et al. Modified Simultaneous Algebraic Reconstruction Technique and its Parallelization in Cryo-electron Tomography , 2009, 2009 15th International Conference on Parallel and Distributed Systems.
[37] Jose-Jesus Fernandez,et al. Computational methods for electron tomography. , 2012, Micron.
[38] D A Agard,et al. Automated data collection for electron microscopic tomography. , 2010, Methods in enzymology.