Critical Mutation Rate has an Exponential Dependence on Population Size for Eukaryotic-length Genomes with Crossover
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Roman V. Belavkin | Alastair Channon | Elizabeth Aston | Christopher G. Knight | Charles Day | A. Channon | C. Knight | R. Belavkin | Elizabeth Aston | Charles Day
[1] C. Pál,et al. Metabolic network analysis of the causes and evolution of enzyme dispensability in yeast , 2004, Nature.
[2] I. Chelo,et al. Evolution of Outcrossing in Experimental Populations of Caenorhabditis elegans , 2012, PloS one.
[3] M. Nowak. Evolutionary Dynamics: Exploring the Equations of Life , 2006 .
[4] D. Bartel,et al. Long noncoding RNAs in C. elegans , 2012, Genome research.
[5] Meredith V. Trotter,et al. Robustness and evolvability. , 2010, Trends in genetics : TIG.
[6] M. Huynen,et al. Neutral evolution of mutational robustness. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[7] M. Lynch. Rate, molecular spectrum, and consequences of human mutation , 2010, Proceedings of the National Academy of Sciences.
[8] R. Lande. Genetics and demography in biological conservation. , 1988, Science.
[9] M. Nowak,et al. Viral quasi-species and recombination , 1996, Proceedings of the Royal Society of London. Series B: Biological Sciences.
[10] Manolis Kellis,et al. Evidence of Abundant Purifying Selection in Humans for Recently Acquired Regulatory Functions , 2012, Science.
[11] C. Simon,et al. Evolutionary ecology of periodical insects. , 1994, Trends in ecology & evolution.
[12] E. Domingo,et al. The 30th anniversary of quasispecies , 2009, EMBO reports.
[13] Roman V. Belavkin,et al. Critical mutation rate in a population with horizontal gene transfer , 2017, ECAL.
[14] D. Krakauer,et al. Redundancy, antiredundancy, and the robustness of genomes , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[15] Profile of Michael Lynch , 2010, Proceedings of the National Academy of Sciences.
[16] H. A. Orr,et al. The population genetics of beneficial mutations , 2010, Philosophical Transactions of the Royal Society B: Biological Sciences.
[17] M. P. Cummings,et al. Nucleotide sequence diversity at the alcohol dehydrogenase 1 locus in wild barley (Hordeum vulgare ssp. spontaneum): an evaluation of the background selection hypothesis. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[18] M. Eigen,et al. What is a quasispecies? , 2006, Current topics in microbiology and immunology.
[19] M. Nachman,et al. Estimate of the mutation rate per nucleotide in humans. , 2000, Genetics.
[20] H. Mori,et al. Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection , 2006, Molecular systems biology.
[21] C. Wilke,et al. Evolution of mutational robustness. , 2003, Mutation research.
[22] B. De Baets,et al. Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[23] P. Phillips. Epistasis — the essential role of gene interactions in the structure and evolution of genetic systems , 2008, Nature Reviews Genetics.
[24] D. Halligan,et al. Estimation of the Spontaneous Mutation Rate per Nucleotide Site in a Drosophila melanogaster Full-Sib Family , 2013, Genetics.
[25] Claus O. Wilke,et al. Adaptive evolution on neutral networks , 2001, Bulletin of mathematical biology.
[26] T. Jukes,et al. The neutral theory of molecular evolution. , 2000, Genetics.
[27] Roman V. Belavkin,et al. Critical Mutation Rate has an Exponential Dependence on Population Size for Eukaryotic-Length Genomes , 2016, ALIFE.
[28] Michael Lachmann,et al. Quasispecies Made Simple , 2005, PLoS Comput. Biol..
[29] Claus O Wilke,et al. Quasispecies theory in the context of population genetics , 2005, BMC Evolutionary Biology.
[30] Vineet K. Sharma,et al. (TG/CA)n repeats in human gene families: abundance and selective patterns of distribution according to function and gene length , 2005, BMC Genomics.
[31] Vikas Rai. Role of Space , 2013 .
[32] Thomas G. Doak,et al. Drift-barrier hypothesis and mutation-rate evolution , 2012, Proceedings of the National Academy of Sciences.
[33] O. Martin,et al. Genome-Wide Crossover Distribution in Arabidopsis thaliana Meiosis Reveals Sex-Specific Patterns along Chromosomes , 2011, PLoS genetics.
[34] Erich Bornberg-Bauer,et al. Robustness versus evolvability: A paradigm revisited , 2010, HFSP journal.
[35] Inman Harvey,et al. Recombination and Error Thresholds in Finite Populations , 1998, FOGA.
[37] M. Lynch. Evolution of the mutation rate. , 2010, Trends in genetics : TIG.
[38] M. Kimura,et al. The mutational load with epistatic gene interactions in fitness. , 1966, Genetics.
[39] A. W. F. Edwards,et al. The statistical processes of evolutionary theory , 1963 .
[40] R. Solé,et al. Simple quasispecies models for the survival-of-the-flattest effect: The role of space. , 2008, Journal of theoretical biology.
[41] F. Montero,et al. The relationship between the error catastrophe, survival of the flattest, and natural selection , 2011, BMC Evolutionary Biology.
[42] The Arabidopsis Genome Initiative. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana , 2000, Nature.
[43] Huanming Yang,et al. Human Y Chromosome Base-Substitution Mutation Rate Measured by Direct Sequencing in a Deep-Rooting Pedigree , 2009, Current Biology.
[44] Karsten M. Borgwardt,et al. Whole-genome sequencing of multiple Arabidopsis thaliana populations , 2011, Nature Genetics.
[45] Data production leads,et al. An integrated encyclopedia of DNA elements in the human genome , 2012 .
[46] R. B. Azevedo,et al. On the Immortality of Television Sets: “Function” in the Human Genome According to the Evolution-Free Gospel of ENCODE , 2013, Genome biology and evolution.
[47] J. Drake,et al. Rates of spontaneous mutation. , 1998, Genetics.
[48] Claus O. Wilke,et al. SELECTION FOR FITNESS VERSUS SELECTION FOR ROBUSTNESS IN RNA SECONDARY STRUCTURE FOLDING , 2001, Evolution; international journal of organic evolution.
[49] Ronald W. Davis,et al. Functional profiling of the Saccharomyces cerevisiae genome , 2002, Nature.
[50] P. Sniegowski,et al. Mutation Rates: How Low Can You Go? , 2013, Current Biology.
[51] F. Welch,et al. Causes and Consequences , 2017, Nature.
[52] R. Tarchini,et al. A Single Amino Acid Difference Distinguishes Resistant and Susceptible Alleles of the Rice Blast Resistance Gene Pi-ta , 2000, Plant Cell.
[53] E. Koonin,et al. Essential genes are more evolutionarily conserved than are nonessential genes in bacteria. , 2002, Genome research.
[54] Circadian clocks of faster developing fruit fly populations also age faster , 2014, Biogerontology.
[55] Sudhir Kumar,et al. Mutation rates in mammalian genomes , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[56] A. Channon,et al. Critical Mutation Rate Has an Exponential Dependence on Population Size in Haploid and Diploid Populations , 2013, PloS one.
[57] Alpan Raval,et al. Evolution favors protein mutational robustness in sufficiently large populations , 2007 .
[58] Michael Lynch,et al. Direct Estimation of the Mitochondrial DNA Mutation Rate in Drosophila melanogaster , 2008, PLoS biology.
[59] D. Hartl,et al. Principles of population genetics , 1981 .
[60] M. Sachs,et al. Two Alleles of Maize ALCOHOL DEHYDROGENASE 1 Have 3' Structural and Poly(a) Addition Polymorphisms. , 1986, Genetics.
[61] W. J. Dickinson,et al. A genome-wide view of the spectrum of spontaneous mutations in yeast , 2008, Proceedings of the National Academy of Sciences.
[62] Michael Ashburner,et al. Drosophila melanogaster: a case study of a model genomic sequence and its consequences. , 2005, Genome research.
[63] D. Altshuler,et al. A map of human genome variation from population-scale sequencing , 2010, Nature.
[64] M. Bevan,et al. The Arabidopsis genome: a foundation for plant research. , 2005, Genome research.
[65] Ó. Crosbie,et al. Hepatitis C quasispecies adaptation in the setting of a variable fidelity polymerase , 2012 .
[66] James C. Frauenthal,et al. Stable Points, Stable Cycles and Chaos , 1979 .
[67] Richard M. Clark,et al. The Rate and Molecular Spectrum of Spontaneous Mutations in Arabidopsis thaliana , 2010, Science.
[68] Marian Thomson,et al. Analysis of the genome sequences of three Drosophila melanogaster spontaneous mutation accumulation lines. , 2009, Genome research.
[69] Inman Harvey,et al. Optimal Mutation Rates and Selection Pressure in Genetic Algorithms , 2000, GECCO.
[70] M. Nowak,et al. Error thresholds of replication in finite populations mutation frequencies and the onset of Muller's ratchet. , 1989, Journal of theoretical biology.
[71] Gabriela Ochoa,et al. Error Thresholds in Genetic Algorithms , 2006, Evolutionary Computation.
[72] M. Eigen,et al. The Hypercycle , 2004, Naturwissenschaften.
[73] L. Kvist,et al. Low population viability in small endangered orchid populations: Genetic variation, seedling recruitment and stochasticity , 2017 .
[74] Dee R. Denver,et al. High mutation rate and predominance of insertions in the Caenorhabditis elegans nuclear genome , 2004, Nature.
[75] Xiaowei Wu,et al. Branching Processes with Biological Applications , 2010 .
[76] C. Wilke. SELECTION FOR FITNESS VERSUS SELECTION FOR ROBUSTNESS IN RNA SECONDARY STRUCTURE FOLDING , 2001, Evolution; international journal of organic evolution.
[77] N. Ellstrand,et al. POPULATION GENETIC CONSEQUENCES OF SMALL POPULATION SIZE: Implications for Plant Conservation , 1993 .
[78] Terence Soule,et al. Comparing genetic robustness in generational vs. steady state evolutionary algorithms , 2006, GECCO.
[79] Jeffrey E. Barrick,et al. Balancing Robustness and Evolvability , 2006, PLoS biology.
[80] Andrés Moya,et al. Validating viral quasispecies with digital organisms: a re-examination of the critical mutation rate , 2005, BMC Evolutionary Biology.
[81] Kei-Hoi Cheung,et al. A Statistical Framework to Predict Functional Non-Coding Regions in the Human Genome Through Integrated Analysis of Annotation Data , 2015, Scientific Reports.
[82] Raymond K. Auerbach,et al. An Integrated Encyclopedia of DNA Elements in the Human Genome , 2012, Nature.
[83] M. Miyamoto,et al. Mutation rate variation in multicellular eukaryotes: causes and consequences , 2007, Nature Reviews Genetics.
[84] P. Hogeweg,et al. Error-threshold exists in fitness landscapes with lethal mutants , 2007, BMC Evolutionary Biology.
[85] R M May,et al. Biological Populations with Nonoverlapping Generations: Stable Points, Stable Cycles, and Chaos , 1974, Science.
[86] C. Ofria,et al. Evolution of digital organisms at high mutation rates leads to survival of the flattest , 2001, Nature.
[87] Emmanuel Tannenbaum,et al. Solution of the quasispecies model for an arbitrary gene network. , 2004, Physical review. E, Statistical, nonlinear, and soft matter physics.
[88] M. Cargill. Characterization of single-nucleotide polymorphisms in coding regions of human genes , 1999, Nature Genetics.