The Influence of Proteins Surface on the Ordering of Surrounded Water

[1]  Nijuan Liu,et al.  Stepwise self-assembly of a block copolymer-platinum(ii) complex hybrid in solvents of variable quality: from worm-like micelles to free-standing sheets to vesicle-like nanostructures. , 2017, Soft matter.

[2]  R. Nisticò,et al.  Sol-gel chemistry, templating and spin-coating deposition: A combined approach to control in a simple way the porosity of inorganic thin films/coatings , 2017 .

[3]  I. Roterman,et al.  Hydrophobic core formation in protein complex of cathepsin , 2014, Journal of biomolecular structure & dynamics.

[4]  Gerrit Groenhof,et al.  GROMACS: Fast, flexible, and free , 2005, J. Comput. Chem..

[5]  Irena Roterman-Konieczna,et al.  Gauss-Function-Based Model of Hydrophobicity Density in Proteins , 2006, Silico Biol..

[6]  H. Berendsen,et al.  Simulations of Proteins in Water a , 1986, Annals of the New York Academy of Sciences.

[7]  H. Kondo,et al.  Hydrophobic ice-binding sites confer hyperactivity of an antifreeze protein from a snow mold fungus. , 2016, The Biochemical journal.

[8]  I Roterman,et al.  Why do antifreeze proteins require a solenoid? , 2018, Biochimie.

[9]  Dimos Poulikakos,et al.  Spontaneous droplet trampolining on rigid superhydrophobic surfaces , 2015, Nature.

[10]  S. Stoyanov,et al.  Rheology of particle/water/oil three-phase dispersions: Electrostatic vs. capillary bridge forces. , 2018, Journal of colloid and interface science.

[11]  V. Muñoz,et al.  When fast is better: protein folding fundamentals and mechanisms from ultrafast approaches , 2016, The Biochemical journal.

[12]  P. Davies,et al.  Ice-Binding Proteins and Their Function. , 2016, Annual review of biochemistry.

[13]  M. Awang,et al.  Wormlike Micellar Solution: Alternate of Polymeric Mobility Control Agent for Chemical EOR , 2014 .

[14]  R. Doolittle,et al.  A simple method for displaying the hydropathic character of a protein. , 1982, Journal of molecular biology.

[15]  Peter L Davies,et al.  High water mobility on the ice-binding surface of a hyperactive antifreeze protein. , 2010, Physical chemistry chemical physics : PCCP.

[16]  J. Mackay,et al.  Solution structure of a hydrophobic analogue of the winter flounder antifreeze protein. , 2002, European journal of biochemistry.

[17]  Lining Wang,et al.  Rheological properties and application of wormlike micelles formed by sodium oleate/benzyltrimethyl ammonium bromide , 2016 .

[18]  Karel Berka,et al.  PDBsum additions , 2013, Nucleic Acids Res..

[19]  M. Gee,et al.  The co-micelle/emulsion templating route to tailor nano-engineered hierarchically porous macrospheres , 2012 .

[20]  Irena Roterman,et al.  Localization of ligand binding site in proteins identified in silico , 2007, Journal of molecular modeling.

[21]  C. Anfinsen.  Principles that govern the folding of protein chains. , 1973, Science.

[22]  K. Dill,et al.  The protein folding problem. , 1993, Annual review of biophysics.

[23]  K. Walters,et al.  A nonprotein thermal hysteresis-producing xylomannan antifreeze in the freeze-tolerant Alaskan beetle Upis ceramboides , 2009, Proceedings of the National Academy of Sciences.

[24]  David A. Lee,et al.  CATH: an expanded resource to predict protein function through structure and sequence , 2016, Nucleic Acids Res..

[25]  Mateusz Banach,et al.  The fuzzy oil drop model, based on hydrophobicity density distribution, generalizes the influence of water environment on protein structure and function. , 2014, Journal of theoretical biology.

[26]  W. Kauzmann.  Some factors in the interpretation of protein denaturation. , 1959, Advances in protein chemistry.

[27]  Irena Roterman-Konieczna,et al.  Application of the Fuzzy Oil Drop Model Describes Amyloid as a Ribbonlike Micelle , 2017, Entropy.

[28]  R. Glockshuber,et al.  Atomic-Resolution Three-Dimensional Structure of Amyloid β Fibrils Bearing the Osaka Mutation , 2014, Angewandte Chemie.

[29]  C. Hew,et al.  Antifreeze proteins of teleost fishes. , 2001, Annual review of physiology.

[30]  P. I. Payne,et al.  In vitro translation of the long-lived messenger ribonucleic acid of dry seeds , 2004, Planta.

[31]  I. Roterman,et al.  Secondary and Supersecondary Structure of Proteins in Light of the Structure of Hydrophobic Cores. , 2019, Methods in molecular biology.

[32]  M. Leissring,et al.  Proteolytic degradation of amyloid β-protein. , 2012, Cold Spring Harbor perspectives in medicine.

[33]  F. Hartl,et al.  Molecular chaperones in cellular protein folding. , 1994, Nature.

[34]  I. Roterman,et al.  Is the hydrophobic core a universal structural element in proteins? , 2017, Journal of Molecular Modeling.

[35]  F. Hartl.  Molecular chaperones in cellular protein folding , 1996, Nature.

[36]  Irena Roterman-Konieczna,et al.  Role of Disulfide Bonds in Stabilizing the Conformation of Selected Enzymes - An Approach Based on Divergence Entropy Applied to the Structure of Hydrophobic Core in Proteins , 2016, Entropy.

[37]  I. Roterman,et al.  Structural Interface Forms and Their Involvement in Stabilization of Multidomain Proteins or Protein Complexes , 2016, International journal of molecular sciences.

[38]  Irena Roterman-Konieczna,et al.  Influence of the Aqueous Environment on Protein Structure - A Plausible Hypothesis Concerning the Mechanism of Amyloidogenesis , 2016, Entropy.

[39]  Jonathan E. Seppala,et al.  Size evolution of highly amphiphilic macromolecular solution assemblies via a distinct bimodal pathway , 2014, Nature Communications.

[40]  R. A. Leibler,et al.  On Information and Sufficiency , 1951 .

[41]  H. Berendsen,et al.  Molecular dynamics: perspective for complex systems. , 1982, Biochemical Society transactions.

[42]  C B Anfinsen,et al.  The formation and stabilization of protein structure. , 1972, The Biochemical journal.

[43]  Irena Roterman-Konieczna,et al.  Application of Divergence Entropy to Characterize the Structure of the Hydrophobic Core in DNA Interacting Proteins , 2015, Entropy.

[44]  H. Sugimoto,et al.  Crystal structure and mutational analysis of Ca2+-independent type II antifreeze protein from longsnout poacher, Brachyopsis rostratus. , 2008, Journal of molecular biology.

[45]  E. Mamontov,et al.  On the structure and dynamics of water associated with single-supported zwitterionic and anionic membranes. , 2017, The Journal of chemical physics.

[46]  V. Aswal,et al.  1-Hexanol triggered structural characterization of the worm-like micelle to vesicle transitions in cetyltrimethylammonium tosylate solutions , 2015 .

[47]  C. Dobson.  Protein folding and misfolding , 2003, Nature.

[48]  Arieh Ben-Naim,et al.  Myths and verities in protein folding theories: from Frank and Evans iceberg-conjecture to explanation of the hydrophobic effect. , 2013, The Journal of chemical physics.

[49]  M. Levitt.  A simplified representation of protein conformations for rapid simulation of protein folding. , 1976, Journal of molecular biology.

[50]  Irena Roterman-Konieczna,et al.  Prediction of Functional Sites Based on the Fuzzy Oil Drop Model , 2007, PLoS Comput. Biol..

[51]  I. Roterman,et al.  Propagation of Fibrillar Structural Forms in Proteins Stopped by Naturally Occurring Short Polypeptide Chain Fragments , 2017, Pharmaceuticals.