Deregulation of the A-to-I RNA editing mechanism in psychiatric disorders.

Schizophrenia and bipolar disorder (BPD) are common neurodevelopmental disorders, characterized by various life-crippling symptoms and high suicide rates. Multiple studies support a strong genetic involvement in the etiology of these disorders, although patterns of inheritance are variable and complex. Adenosine-to-inosine RNA editing is a cellular mechanism, which has been implicated in mental disorders and suicide. To examine the involvement of altered RNA editing in these disorders, we: (i) quantified the mRNA levels of the adenosine deaminase acting on RNA (ADAR) editing enzymes by real-time quantitative polymerase chain reaction, and (ii) measured the editing levels in transcripts of several neuroreceptors using 454 high-throughput sequencing, in dorsolateral-prefrontal cortices of schizophrenics, BPD patients and controls. Increased expression of specific ADAR2 variants with diminished catalytic activity was observed in schizophrenia. Our results also indicate that the I/V editing site in the glutamate receptor, ionotropic kainate 2 (GRIK2) transcript is under-edited in BPD (type I) patients (45.8 versus 53.9%, P= 0.023). GRIK2 has been implicated in mood disorders, and editing of its I/V site can modulate Ca(+2) permeability of the channel, consistent with numerous observations of elevated intracellular Ca(+2) levels in BPD patients. Our findings may therefore, at least partly, explain a molecular mechanism underlying the disorder. In addition, an intriguing correlation was found between editing events on separate exons of GRIK2. Finally, multiple novel editing sites were detected near previously known sites, albeit most with very low editing rates. This supports the hypothesis raised previously regarding the existence of wide-spread low-level 'background' editing as a mechanism that enhances adaptation and evolvability.

[1]  H. Pétursson,et al.  Linkage findings in bipolar disorder , 1995, Nature Genetics.

[2]  S. Heinemann,et al.  Intron sequence directs RNA editing of the glutamate receptor subunit GluR2 coding sequence. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[3]  J. Nurnberger,et al.  Affected-sib-pair analyses reveal support of prior evidence for a susceptibility locus for bipolar disorder, on 21q. , 1996, American journal of human genetics.

[4]  Sean P Mullen,et al.  RNA editing: a driving force for adaptive evolution? , 2009, BioEssays : news and reviews in molecular, cellular and developmental biology.

[5]  H. Pétursson,et al.  Two-locus admixture linkage analysis of bipolar and unipolar affective disorder supports the presence of susceptibility loci on chromosomes 11p15 and 21q22. , 1997, Genomics.

[6]  F. Fumagalli,et al.  Chronic phencyclidine administration reduces the expression and editing of specific glutamate receptors in rat prefrontal cortex , 2007, Experimental Neurology.

[7]  S Rozen,et al.  Primer3 on the WWW for general users and for biologist programmers. , 2000, Methods in molecular biology.

[8]  T. Dawson,et al.  Regulation of alternative splicing by RNA editing , 1999, Nature.

[9]  J. Meador-Woodruff,et al.  Abnormal Glutamate Receptor Expression in the Medial Temporal Lobe in Schizophrenia and Mood Disorders , 2007, Neuropsychopharmacology.

[10]  L. Brown,et al.  Interval Estimation for a Binomial Proportion , 2001 .

[11]  Kazuya Iwamoto,et al.  RNA editing of serotonin 2C receptor in human postmortem brains of major mental disorders , 2003, Neuroscience Letters.

[12]  C. Schmauss,et al.  Modulation of Serotonin 2C Receptor Editing by Sustained Changes in Serotonergic Neurotransmission , 2002, The Journal of Neuroscience.

[13]  M. O’Connell,et al.  Down-regulation of RNA Editing in Pediatric Astrocytomas , 2008, Journal of Biological Chemistry.

[14]  Benjamin W. H. Lim,et al.  Regulation of the GABA cell phenotype in hippocampus of schizophrenics and bipolars , 2007, Proceedings of the National Academy of Sciences.

[15]  N. Lange,et al.  Parvalbumin Neurons in the Entorhinal Cortex of Subjects Diagnosed With Bipolar Disorder or Schizophrenia , 2007, Biological Psychiatry.

[16]  B. Sakmann,et al.  Determinants of ca2+ permeability in both TM1 and TM2 of high affinity kainate receptor channels: Diversity by RNA editing , 1993, Neuron.

[17]  R. Yolken,et al.  The Stanley Foundation brain collection and Neuropathology Consortium , 2000, Schizophrenia Research.

[18]  A. Agresti,et al.  Order-restricted tests for stratified comparisons of binomial proportions. , 1996, Biometrics.

[19]  B. Bass,et al.  Inositol Hexakisphosphate Is Bound in the ADAR2 Core and Required for RNA Editing , 2005, Science.

[20]  H. M. Morris,et al.  GABA-related transcripts in the dorsolateral prefrontal cortex in mood disorders. , 2011, The international journal of neuropsychopharmacology.

[21]  Brenda L Bass,et al.  RNA editing by adenosine deaminases that act on RNA. , 2002, Annual review of biochemistry.

[22]  H. P. Kang,et al.  Extensive genomic and transcriptional diversity identified through massively parallel DNA and RNA sequencing of eighteen Korean individuals , 2011, Nature Genetics.

[23]  P. Seeburg,et al.  RNA editing in brain controls a determinant of ion flow in glutamate-gated channels , 1991, Cell.

[24]  Victoria Arango,et al.  Altered Editing of Serotonin 2C Receptor Pre-mRNA in the Prefrontal Cortex of Depressed Suicide Victims , 2002, Neuron.

[25]  Mingyao Li,et al.  Widespread RNA and DNA Sequence Differences in the Human Transcriptome , 2011, Science.

[26]  Russell J. Davenport,et al.  Removing Noise From Pyrosequenced Amplicons , 2011, BMC Bioinformatics.

[27]  Michael Q. Zhang,et al.  Regulating Gene Expression through RNA Nuclear Retention , 2005, Cell.

[28]  B. Bass,et al.  A phylogenetic analysis reveals an unusual sequence conservation within introns involved in RNA editing. , 2000, RNA.

[29]  S. Akbarian,et al.  Editing for an AMPA receptor subunit RNA in prefrontal cortex and striatum in Alzheimer's disease, Huntington's disease and schizophrenia , 1995, Brain Research.

[30]  M. Popoli,et al.  Regulation of Editing and Expression of Glutamate α-Amino-Propionic-Acid (AMPA)/Kainate Receptors by Antidepressant Drugs , 2006, Biological Psychiatry.

[31]  T Kuner,et al.  Control of kinetic properties of AMPA receptor channels by nuclear RNA editing. , 1994, Science.

[32]  E. B. Wilson Probable Inference, the Law of Succession, and Statistical Inference , 1927 .

[33]  Jurg Ott,et al.  A possible vulnerability locus for bipolar affective disorder on chromosome 21q22.3 , 1994, Nature Genetics.

[34]  P. Seeburg,et al.  Q/R site editing in kainate receptor GluR5 and GluR6 pre-mRNAs requires distant intronic sequences. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[35]  H. Manji,et al.  Mitochondrially Mediated Plasticity in the Pathophysiology and Treatment of Bipolar Disorder , 2008, Neuropsychopharmacology.

[36]  David Haussler,et al.  Editing modifies the GABAA receptor subunit α3 , 2007 .

[37]  A. Barbon,et al.  RNA editing: a molecular mechanism for the fine modulation of neuronal transmission. , 2005, Acta neurochirurgica. Supplement.

[38]  Punita Bhansali,et al.  How Stress and Fluoxetine Modulate Serotonin 2C Receptor Pre-mRNA Editing , 2005, The Journal of Neuroscience.

[39]  Matthew R. Pocock,et al.  The Bioperl toolkit: Perl modules for the life sciences. , 2002, Genome research.

[40]  F. McMahon,et al.  Initial genome scan of the NIMH genetics initiative bipolar pedigrees: chromosomes 4, 7, 9, 18, 19, 20, and 21q. , 1997, American journal of medical genetics.

[41]  B. Bass,et al.  The mechanism of adenosine to inosine conversion by the double-stranded RNA unwinding/modifying activity: a high-performance liquid chromatography-mass spectrometry analysis. , 1991, Biochemistry.

[42]  D. Luckenbaugh,et al.  Evidence for the involvement of the kainate receptor subunit GluR6 (GRIK2) in mediating behavioral displays related to behavioral symptoms of mania , 2008, Molecular Psychiatry.

[43]  L. Siever,et al.  Increased serotonin 2C receptor mRNA editing: a possible risk factor for suicide , 2008, Molecular Psychiatry.

[44]  Paul J. Harrison,et al.  RNA editing of the 5-HT2C receptor is reduced in schizophrenia , 2001, Molecular Psychiatry.

[45]  R. Pease,et al.  A novel form of tissue-specific RNA processing produces apolipoprotein-B48 in intestine , 1987, Cell.

[46]  Baoman Li,et al.  Down-regulation of GluK2 kainate receptor expression by chronic treatment with mood-stabilizing anti-convulsants or lithium in cultured astrocytes and brain, but not in neurons , 2009, Neuropharmacology.

[47]  Gavin P. Reynolds,et al.  A selective decrease in the relative density of parvalbumin-immunoreactive neurons in the hippocampus in schizophrenia , 2002, Schizophrenia Research.

[48]  François Major,et al.  Recognition and coupling of A-to-I edited sites are determined by the tertiary structure of the RNA , 2009, Nucleic acids research.

[49]  Mats Ensterö,et al.  Large-scale mRNA sequencing determines global regulation of RNA editing during brain development. , 2009, Genome research.

[50]  G. Silberberg,et al.  Detection of stable reference genes for real-time PCR analysis in schizophrenia and bipolar disorder. , 2009, Analytical biochemistry.

[51]  Erez Y. Levanon,et al.  Evolutionarily conserved human targets of adenosine to inosine RNA editing , 2005, Nucleic acids research.

[52]  Thomas D. Schmittgen,et al.  Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. , 2001, Methods.

[53]  Joshua J C Rosenthal,et al.  Control of human potassium channel inactivation by editing of a small mRNA hairpin , 2004, Nature Structural &Molecular Biology.

[54]  J D Terwilliger,et al.  A follow-up linkage study supports evidence for a bipolar affective disorder locus on chromosome 21q22. , 2001, American journal of medical genetics.

[55]  F. McMahon,et al.  Initial genome scan of the NIMH genetics initiative bipolar pedigrees: chromosomes 1, 6, 8, 10, and 12. , 1997, American journal of medical genetics.

[56]  Stella Dracheva,et al.  RNA editing and alternative splicing of human serotonin 2C receptor in schizophrenia , 2003, Journal of neurochemistry.

[57]  Colleen M Niswender,et al.  RNA Editing of the Human Serotonin 5-HT2C Receptor: Alterations in Suicide and Implications for Serotonergic Pharmacotherapy , 2001, Neuropsychopharmacology.

[58]  K. Nishikura,et al.  Editing of glutamate receptor B subunit ion channel RNAs by four alternatively spliced DRADA2 double-stranded RNA adenosine deaminases , 1997, Molecular and cellular biology.

[59]  References , 1971 .