Structural mechanisms of selectivity and gating in anion channelrhodopsins
暂无分享,去创建一个
Hideki Kandori | Ron O. Dror | Brian K. Kobilka | Karl Deisseroth | Keiichi Inoue | William E. Allen | Keitaro Yamashita | Joseph M. Paggi | Lief E. Fenno | Charu Ramakrishnan | Daniel Hilger | Andre Berndt | Hideaki E. Kato | Shota Ito | K. Deisseroth | R. Dror | C. Ramakrishnan | K. Shen | B. Kobilka | Kathryn Evans | H. Kato | Soo Yeun Lee | K. Yamashita | D. Hilger | H. Kandori | Kang Shen | Yoon Seok Kim | Kathryn E. Evans | Claire Richardson | S. Ito | Claire E. Richardson | Keiichi Inoue | Y. Kim | Andre Berndt
[1] Sergey L. Gratiy,et al. Fully integrated silicon probes for high-density recording of neural activity , 2017, Nature.
[2] J. Spudich,et al. Natural light-gated anion channels: A family of microbial rhodopsins for advanced optogenetics , 2015, Science.
[3] P. Emsley,et al. Features and development of Coot , 2010, Acta crystallographica. Section D, Biological crystallography.
[4] N. Pannu,et al. REFMAC5 for the refinement of macromolecular crystal structures , 2011, Acta crystallographica. Section D, Biological crystallography.
[5] Elena G. Govorunova,et al. The Expanding Family of Natural Anion Channelrhodopsins Reveals Large Variations in Kinetics, Conductance, and Spectral Sensitivity , 2017, Scientific Reports.
[6] D. Case,et al. Revised AMBER parameters for bioorganic phosphates. , 2012, Journal of chemical theory and computation.
[7] K. Deisseroth,et al. Place field assembly distribution encodes preferred locations , 2017, PLoS biology.
[8] Alexander D. MacKerell,et al. CHARMM general force field: A force field for drug‐like molecules compatible with the CHARMM all‐atom additive biological force fields , 2009, J. Comput. Chem..
[9] K. Deisseroth,et al. Molecular Dynamics of Channelrhodopsin at the Early Stages of Channel Opening , 2015, PloS one.
[10] Hideki Kandori,et al. Crystal structure of the natural anion-conducting channelrhodopsin GtACR1 , 2018, Nature.
[11] Alexander D. MacKerell,et al. Optimization of the additive CHARMM all-atom protein force field targeting improved sampling of the backbone φ, ψ and side-chain χ(1) and χ(2) dihedral angles. , 2012, Journal of chemical theory and computation.
[12] Jing Huang,et al. CHARMM36 all‐atom additive protein force field: Validation based on comparison to NMR data , 2013, J. Comput. Chem..
[13] Karl Deisseroth,et al. Integration of optogenetics with complementary methodologies in systems neuroscience , 2017, Nature Reviews Neuroscience.
[14] Karl Deisseroth,et al. Modulation of prefrontal cortex excitation/inhibition balance rescues social behavior in CNTNAP2-deficient mice , 2017, Science Translational Medicine.
[15] Adam Santoro,et al. Structural foundations of optogenetics: Determinants of channelrhodopsin ion selectivity , 2015, Proceedings of the National Academy of Sciences.
[16] Satoshi P. Tsunoda,et al. Conversion of Channelrhodopsin into a Light-Gated Chloride Channel , 2014, Science.
[17] William E. Allen,et al. Thirst-associated preoptic neurons encode an aversive motivational drive , 2017, Science.
[18] Lief E. Fenno,et al. Neocortical excitation/inhibition balance in information processing and social dysfunction , 2011, Nature.
[19] B. L. de Groot,et al. CHARMM36m: an improved force field for folded and intrinsically disordered proteins , 2016, Nature Methods.
[20] Massimo Scanziani,et al. An improved chloride-conducting channelrhodopsin for light-induced inhibition of neuronal activity in vivo , 2015, Scientific Reports.
[21] George Paxinos,et al. The Mouse Brain in Stereotaxic Coordinates , 2001 .
[22] Feng Zhang,et al. Multimodal fast optical interrogation of neural circuitry , 2007, Nature.
[23] K. Hirata,et al. KAMO: towards automated data processing for microcrystals , 2018, Acta crystallographica. Section D, Structural biology.
[24] Karl Deisseroth,et al. The form and function of channelrhodopsin , 2017, Science.
[25] K. Deisseroth,et al. Ultrafast optogenetic control , 2010, Nature Neuroscience.
[26] Daniel R Roe,et al. PTRAJ and CPPTRAJ: Software for Processing and Analysis of Molecular Dynamics Trajectory Data. , 2013, Journal of chemical theory and computation.
[27] J Hermans,et al. Hydrophilicity of cavities in proteins , 1996, Proteins.
[28] S. Rick,et al. Atomistic Study of Intramolecular Interactions in the Closed-State Channelrhodopsin Chimera, C1C2. , 2017, Biophysical journal.
[29] Duncan Poole,et al. Routine Microsecond Molecular Dynamics Simulations with AMBER on GPUs. 2. Explicit Solvent Particle Mesh Ewald. , 2013, Journal of chemical theory and computation.
[30] Karl Deisseroth,et al. Structure-Guided Transformation of Channelrhodopsin into a Light-Activated Chloride Channel , 2014, Science.
[31] A. Roitberg,et al. Long-Time-Step Molecular Dynamics through Hydrogen Mass Repartitioning. , 2015, Journal of chemical theory and computation.
[32] Alexander D. MacKerell,et al. Update of the CHARMM all-atom additive force field for lipids: validation on six lipid types. , 2010, The journal of physical chemistry. B.
[33] Nathan A. Baker,et al. PDB2PQR: an automated pipeline for the setup of Poisson-Boltzmann electrostatics calculations , 2004, Nucleic Acids Res..
[34] Randy J. Read,et al. Phaser crystallographic software , 2007, Journal of applied crystallography.
[35] Torsten Schwede,et al. SWISS-MODEL: homology modelling of protein structures and complexes , 2018, Nucleic Acids Res..
[36] Alexander D. MacKerell,et al. Inclusion of many-body effects in the additive CHARMM protein CMAP potential results in enhanced cooperativity of α-helix and β-hairpin formation. , 2012, Biophysical journal.
[37] K. Deisseroth,et al. Molecular and Cellular Approaches for Diversifying and Extending Optogenetics , 2010, Cell.
[38] Hideaki E. Kato,et al. Crystal structure of the channelrhodopsin light-gated cation channel , 2012, Nature.
[39] K. Deisseroth. Optogenetics: 10 years of microbial opsins in neuroscience , 2015, Nature Neuroscience.
[40] S. Feller,et al. Retinal conformation governs pKa of protonated Schiff base in rhodopsin activation. , 2013, Journal of the American Chemical Society.
[41] Andrei L. Lomize,et al. OPM: Orientations of Proteins in Membranes database , 2006, Bioinform..
[42] K Schulten,et al. VMD: visual molecular dynamics. , 1996, Journal of molecular graphics.
[43] Hongkui Zeng,et al. Identification of Preoptic Sleep Neurons Using Retrograde Labeling and Gene Profiling , 2017, Nature.
[44] J. Spudich,et al. Photochemical reaction cycle transitions during anion channelrhodopsin gating , 2016, Proceedings of the National Academy of Sciences.
[45] Randy J. Read,et al. Acta Crystallographica Section D Biological , 2003 .