Patrocles: a database of polymorphic miRNA-mediated gene regulation in vertebrates
暂无分享,去创建一个
Michel Georges | Samuel Hiard | Denis Baurain | Carole Charlier | Wouter Coppieters | M. Georges | D. Baurain | W. Coppieters | C. Charlier | S. Hiard
[1] P. Green,et al. Bayesian Markov chain Monte Carlo sequence analysis reveals varying neutral substitution patterns in mammalian evolution. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[2] C. Burge,et al. The Widespread Impact of Mammalian MicroRNAs on mRNA Repression and Evolution , 2005, Science.
[3] B. Galloway,et al. LACK OF ASSOCIATION BETWEEN SLITRK1var321 AND TOURETTE SYNDROME IN A LARGE FAMILY-BASED SAMPLE , 2008, Neurology.
[4] L. Almasy,et al. Discovery of expression QTLs using large-scale transcriptional profiling in human lymphocytes , 2007, Nature Genetics.
[5] S. Batalov,et al. A gene atlas of the mouse and human protein-encoding transcriptomes. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[6] Peng Jin,et al. Single nucleotide polymorphism associated with mature miR-125a alters the processing of pri-miRNA. , 2007, Human molecular genetics.
[7] D. Bartel,et al. Microarray profiling of microRNAs reveals frequent coexpression with neighboring miRNAs and host genes. , 2005, RNA.
[8] Chiara Sabatti,et al. Overrepresentation of rare variants in a specific ethnic group may confuse interpretation of association analyses. , 2006, Human molecular genetics.
[9] Anton J. Enright,et al. An ENU-induced mutation of miR-96 associated with progressive hearing loss in mice , 2009, Nature Genetics.
[10] Ting Wang,et al. The UCSC Genome Browser Database: update 2009 , 2008, Nucleic Acids Res..
[11] Gretchen M. Williams,et al. DICER1 Mutations in Familial Pleuropulmonary Blastoma , 2009, Science.
[12] Carolyn J. Brown,et al. A comprehensive analysis of common copy-number variations in the human genome. , 2007, American journal of human genetics.
[13] A. van Oudenaarden,et al. MicroRNA-mediated feedback and feedforward loops are recurrent network motifs in mammals. , 2007, Molecular cell.
[14] Robert Johansson,et al. Polymorphisms in predicted microRNA-binding sites in integrin genes and breast cancer: ITGB4 as prognostic marker. , 2008, Carcinogenesis.
[15] M. Olivier. A haplotype map of the human genome. , 2003, Nature.
[16] Fan Zhou,et al. Analysis of sequence variations in 59 microRNAs in hepatocellular carcinomas. , 2008, Mutation research.
[17] D. Banerjee,et al. A miR-24 microRNA binding-site polymorphism in dihydrofolate reductase gene leads to methotrexate resistance , 2007, Proceedings of the National Academy of Sciences.
[18] D. Cox,et al. Analysis of allelic differential expression in human white blood cells. , 2006, Genome research.
[19] A. Berardelli,et al. A large Italian family with Gilles de la Tourette syndrome: Clinical study and analysis of the SLITRK1 gene , 2007, Movement disorders : official journal of the Movement Disorder Society.
[20] Michel Georges,et al. Polymorphic miRNA-mediated gene regulation: contribution to phenotypic variation and disease. , 2007, Current opinion in genetics & development.
[21] Stijn van Dongen,et al. miRBase: tools for microRNA genomics , 2007, Nucleic Acids Res..
[22] K. Lindblad-Toh,et al. Systematic discovery of regulatory motifs in human promoters and 3′ UTRs by comparison of several mammals , 2005, Nature.
[23] D. Koller,et al. Population genomics of human gene expression , 2007, Nature Genetics.
[24] S. V. Heesch,et al. Distribution and functional impact of DNA copy number variation in the rat , 2008, Nature Genetics.
[25] F. Tsai,et al. Association of the Slit and Trk-like 1 gene in Taiwanese patients with Tourette syndrome. , 2007, Pediatric neurology.
[26] N. Iwai,et al. Polymorphisms in human pre-miRNAs. , 2005, Biochemical and biophysical research communications.
[27] N. Yang,et al. MicroRNA epigenetic alterations in human cancer: One step forward in diagnosis and treatment , 2007, International journal of cancer.
[28] D. Bartel,et al. The impact of microRNAs on protein output , 2008, Nature.
[29] E. Eichler,et al. Mouse segmental duplication and copy number variation , 2008, Nature Genetics.
[30] L. Liang,et al. A genome-wide association study of global gene expression , 2007, Nature Genetics.
[31] Artemis G. Hatzigeorgiou,et al. Genomic and epigenetic alterations deregulate microRNA expression in human epithelial ovarian cancer , 2008, Proceedings of the National Academy of Sciences.
[32] Daniel J. Blankenberg,et al. Galaxy: a platform for interactive large-scale genome analysis. , 2005, Genome research.
[33] Yuanqing Ye,et al. Evaluation of genetic variants in microRNA-related genes and risk of bladder cancer. , 2008, Cancer research.
[34] Zhenbao Yu,et al. Genetic variations of microRNAs in human cancer and their effects on the expression of miRNAs. , 2008, Carcinogenesis.
[35] Murat Gunel,et al. Sequence Variants in SLITRK1 Are Associated with Tourette's Syndrome , 2005, Science.
[36] J. Stephenson. 1000 Genomes Project , 2008 .
[37] D. Haussler,et al. Phylogenetic estimation of context-dependent substitution rates by maximum likelihood. , 2003, Molecular biology and evolution.
[38] Praveen Sethupathy,et al. Human microRNA-155 on chromosome 21 differentially interacts with its polymorphic target in the AGTR1 3' untranslated region: a mechanism for functional single-nucleotide polymorphisms related to phenotypes. , 2007, American journal of human genetics.
[39] Gaofeng Wang,et al. Variation in the miRNA-433 binding site of FGF20 confers risk for Parkinson disease by overexpression of alpha-synuclein. , 2008, American journal of human genetics.
[40] M. Pericak-Vance,et al. Mutations in the novel mitochondrial protein REEP1 cause hereditary spastic paraplegia type 31. , 2006, American journal of human genetics.
[41] V. Kim,et al. Processing of intronic microRNAs , 2007, The EMBO journal.
[42] Thomas J Hudson,et al. Survey of allelic expression using EST mining. , 2005, Genome research.
[43] Jun S. Song,et al. Chromatin structure analyses identify miRNA promoters , 2008 .
[44] George A Calin,et al. Chromosomal rearrangements and microRNAs: a new cancer link with clinical implications. , 2007, The Journal of clinical investigation.
[45] Sven Diederichs,et al. Sequence variations of microRNAs in human cancer: alterations in predicted secondary structure do not affect processing. , 2006, Cancer research.
[46] K. Hemminki,et al. Polymorphisms within micro-RNA-binding sites and risk of sporadic colorectal cancer. , 2007, Carcinogenesis.
[47] M. Olivier. A haplotype map of the human genome , 2003, Nature.
[48] N. Rajewsky,et al. The evolution of gene regulation by transcription factors and microRNAs , 2007, Nature Reviews Genetics.
[49] Ole A. Andreassen,et al. Brain Expressed microRNAs Implicated in Schizophrenia Etiology , 2007, PloS one.
[50] N. Rajewsky,et al. Widespread changes in protein synthesis induced by microRNAs , 2008, Nature.
[51] T. Tahara,et al. A Polymorphism of microRNA 27a Genome Region Is Associated With the Development of Gastric Mucosal Atrophy in Japanese Male Subjects , 2007, Digestive Diseases and Sciences.
[52] Peter F. Arndt,et al. Identification and Measurement of Neigbor Dependent Nucleotide Substitution Processes , 2005, German Conference on Bioinformatics.
[53] Joshua T. Burdick,et al. Common genetic variants account for differences in gene expression among ethnic groups , 2007, Nature Genetics.
[54] N. Rajewsky,et al. Natural selection on human microRNA binding sites inferred from SNP data , 2006, Nature Genetics.
[55] D. Bartel,et al. Allelic imbalance sequencing reveals that single-nucleotide polymorphisms frequently alter microRNA-directed repression , 2009, Nature Biotechnology.
[56] M. Kiebler,et al. Faculty Opinions recommendation of Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps. , 2009 .
[57] R. Russell,et al. Animal MicroRNAs Confer Robustness to Gene Expression and Have a Significant Impact on 3′UTR Evolution , 2005, Cell.
[58] A. Ballabio,et al. MicroRNA target prediction by expression analysis of host genes. , 2009, Genome research.
[59] L. Feuk,et al. Development of bioinformatics resources for display and analysis of copy number and other structural variants in the human genome , 2006, Cytogenetic and Genome Research.
[60] T. Conner,et al. A common polymorphism in serotonin receptor 1B mRNA moderates regulation by miR-96 and associates with aggressive human behaviors , 2009, Molecular Psychiatry.
[61] Peter Mitchell. Investor malaise stalks UK, European biotech , 2008, Nature Biotechnology.
[62] Walter Fontana,et al. Fast folding and comparison of RNA secondary structures , 1994 .
[63] Andrew M. Jenkinson,et al. Ensembl 2009 , 2008, Nucleic Acids Res..
[64] Yiliang Zhang,et al. Allele-specific targeting of hsa-miR-657 to human IGF2R creates a potential mechanism underlying the association of ACAA-insertion/deletion polymorphism with type 2 diabetes. , 2008, Biochemical and biophysical research communications.
[65] C. Sander,et al. A Mammalian microRNA Expression Atlas Based on Small RNA Library Sequencing , 2007, Cell.
[66] Praveen Sethupathy,et al. MicroRNA target site polymorphisms and human disease. , 2008, Trends in genetics : TIG.
[67] Muller Fabbri,et al. A MicroRNA signature associated with prognosis and progression in chronic lymphocytic leukemia. , 2005, The New England journal of medicine.
[68] Joshua M. Korn,et al. Integrated detection and population-genetic analysis of SNPs and copy number variation , 2008, Nature Genetics.
[69] D. Conrad,et al. Global variation in copy number in the human genome , 2006, Nature.
[70] S. Hunt,et al. Genome-Wide Associations of Gene Expression Variation in Humans , 2005, PLoS genetics.
[71] Florian Caiment,et al. A mutation creating a potential illegitimate microRNA target site in the myostatin gene affects muscularity in sheep , 2006, Nature Genetics.
[72] B. White,et al. The Micro-Ribonucleic Acid (miRNA) miR-206 Targets the Human Estrogen Receptor-α (ERα) and Represses ERα Messenger RNA and Protein Expression in Breast Cancer Cell Lines , 2007 .
[73] C. Molony,et al. Genetic analysis of genome-wide variation in human gene expression , 2004, Nature.
[74] F. Slack,et al. Cancer Risk Small Cell Lung − Untranslated Region Increases Non ′ 3 KRAS microRNA Complementary Site in the let-7 A SNP in a , 2008 .
[75] Joshua T. Burdick,et al. Mapping determinants of human gene expression by regional and genome-wide association , 2005, Nature.
[76] J. Jankovic,et al. Examination of the SLITRK1 gene in Caucasian patients with Tourette syndrome , 2006, Acta neurologica Scandinavica.
[77] Carole Ober,et al. Allele-specific targeting of microRNAs to HLA-G and risk of asthma. , 2007, American journal of human genetics.
[78] P. Whorwell,et al. First evidence for an association of a functional variant in the microRNA-510 target site of the serotonin receptor-type 3E gene with diarrhea predominant irritable bowel syndrome. , 2008, Human molecular genetics.
[79] L. Lim,et al. MicroRNA targeting specificity in mammals: determinants beyond seed pairing. , 2007, Molecular cell.
[80] M. Pericak-Vance,et al. REEP1 mutation spectrum and genotype/phenotype correlation in hereditary spastic paraplegia type 31. , 2008, Brain : a journal of neurology.
[81] C. Burge,et al. Conserved Seed Pairing, Often Flanked by Adenosines, Indicates that Thousands of Human Genes are MicroRNA Targets , 2005, Cell.