Systems Biology Perspectives on Cerebellar Long-Term Depression

Long-term depression (LTD) at parallel fiber-Purkinje cell (PF-PC) synapses is thought to be the cellular correlate of cerebellar associative learning. The molecular processes are, in brief, phosphorylation of AMPA-type glutamate receptors (AMPARs) and their subsequent removal from the surface of the PF-PC synapse. In order to elucidate the fundamental mechanisms for cerebellar LTD and further the understanding of its computational role, we have investigated its systems biology and proposed the following hypotheses, some of which have already been experimentally verified: (1) due to the mitogen-activated protein kinase (MAPK)-protein kinase C (PKC) positive feedback loop, phosphorylation of AMPARs is an all-or-none event; (2) the inositol 1,4,5-triphosphate receptor detects concurrent PF and climbing fiber inputs, forming the cellular basis for associative learning, and (3) the local concentration of nitric oxide in the PC dendrite reflects the relevance of a given context, enabling context-dependent selection of learning modules within the cerebellum. In this review, we first introduce theoretical studies on cerebellar LTD, mainly focusing on our own published work, followed by a discussion of the effects of stochasticity, localization, diffusion, and scaffolding. Neurons embody two features that are apparently contradictory, yet necessary for synaptic memory: stability and plasticity. We will also present models for explaining how neurons solve this dilemma. In the final section, we propose a conceptual model in which a cascade of excitable dynamics with different time scales, i.e., Ca2+-induced Ca2+ release, the MAPK-PKC positive feedback loop, and protein kinase Mζ (PKMζ)-induced PKMζ synthesis, provides a mechanism for stable memory that is still amenable to modifications.

[1]  Kea-Joo Lee,et al.  The roles of dendritic spine shapes in Purkinje cells , 2008, The Cerebellum.

[2]  C. Peyssonnaux,et al.  The Raf/MEK/ERK pathway: new concepts of activation , 2001, Biology of the cell.

[3]  M. Kennedy,et al.  Signal-processing machines at the postsynaptic density. , 2000, Science.

[4]  Rafael Yuste,et al.  On the electrical function of dendritic spines , 2004, Trends in Neurosciences.

[5]  T. Sacktor,et al.  Protein synthesis-dependent formation of protein kinase Mzeta in long- term potentiation , 1996, The Journal of neuroscience : the official journal of the Society for Neuroscience.

[6]  Katherine C. Chen,et al.  Sniffers, buzzers, toggles and blinkers: dynamics of regulatory and signaling pathways in the cell. , 2003, Current opinion in cell biology.

[7]  Todd Charlton Sacktor,et al.  Persistent Phosphorylation by Protein Kinase Mζ Maintains Late-Phase Long-Term Potentiation , 2005, The Journal of Neuroscience.

[8]  U. Bhalla Signaling in small subcellular volumes. II. Stochastic and diffusion effects on synaptic network properties. , 2004, Biophysical journal.

[9]  M Ito,et al.  Neurophysiological aspects of the cerebellar motor control system. , 1970, International journal of neurology.

[10]  M. Kawato,et al.  Ca2+ Requirements for Cerebellar Long-Term Synaptic Depression: Role for a Postsynaptic Leaky Integrator , 2007, Neuron.

[11]  Mitsuo Kawato,et al.  Internal models for motor control and trajectory planning , 1999, Current Opinion in Neurobiology.

[12]  M. Ito,et al.  Cerebellar long-term depression: characterization, signal transduction, and functional roles. , 2001, Physiological reviews.

[13]  M. Iino,et al.  Cross Talk between Metabotropic and Ionotropic Glutamate Receptor-Mediated Signaling in Parallel Fiber-Induced Inositol 1,4,5-Trisphosphate Production in Cerebellar Purkinje Cells , 2004, The Journal of Neuroscience.

[14]  E. Pastalkova,et al.  Storage of Spatial Information by the Maintenance Mechanism of LTP , 2006, Science.

[15]  J. Lisman A mechanism for memory storage insensitive to molecular turnover: a bistable autophosphorylating kinase. , 1985, Proceedings of the National Academy of Sciences of the United States of America.

[16]  Roger Y Tsien,et al.  A new form of cerebellar long-term potentiation is postsynaptic and depends on nitric oxide but not cAMP , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[17]  M. Kazanietz,et al.  Protein kinase C isozymes, novel phorbol ester receptors and cancer chemotherapy. , 2001, Current pharmaceutical design.

[18]  M. Segal,et al.  Activation of PKC induces rapid morphological plasticity in dendrites of hippocampal neurons via Rac and Rho‐dependent mechanisms , 2004, The European journal of neuroscience.

[19]  F. Crick Neurobiology: Memory and molecular turnover , 1984, Nature.

[20]  Zhilin Qu,et al.  Signal transduction network motifs and biological memory. , 2007, Journal of theoretical biology.

[21]  George J. Augustine,et al.  Local calcium signalling by inositol-1,4,5-trisphosphate in Purkinje cell dendrites , 1998, Nature.

[22]  N. Hartell,et al.  Strong Activation of Parallel Fibers Produces Localized Calcium Transients and a Form of LTD That Spreads to Distant Synapses , 1996, Neuron.

[23]  M. Sakurai Calcium is an intracellular mediator of the climbing fiber in induction of cerebellar long-term depression. , 1990, Proceedings of the National Academy of Sciences of the United States of America.

[24]  E De Schutter,et al.  Cerebellar long-term depression might normalize excitation of Purkinje cells: a hypothesis. , 1995, Trends in neurosciences.

[25]  W. T. Thach A Role for the Cerebellum in Learning Movement Coordination , 1998, Neurobiology of Learning and Memory.

[26]  James Watras,et al.  Bell-shaped calcium-response curves of lns(l,4,5)P3- and calcium-gated channels from endoplasmic reticulum of cerebellum , 1991, Nature.

[27]  Maryann E Martone,et al.  Evidence for Ectopic Neurotransmission at a Neuronal Synapse , 2005, Science.

[28]  Arthur Bierman,et al.  Studies on the effects of structure on the behavior of enzyme systems , 1954 .

[29]  J E Ferrell,et al.  How regulated protein translocation can produce switch-like responses. , 1998, Trends in biochemical sciences.

[30]  Eduardo Sontag,et al.  Untangling the wires: A strategy to trace functional interactions in signaling and gene networks , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[31]  Susumu Tonegawa,et al.  Translational Regulatory Mechanisms in Persistent Forms of Synaptic Plasticity , 2004, Neuron.

[32]  L. Hood,et al.  Reverse Engineering of Biological Complexity , 2007 .

[33]  J. Hopfield,et al.  All-or-none potentiation at CA3-CA1 synapses. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[34]  J. G. Mcelligott,et al.  Cerebellar nitric oxide is necessary for vestibulo-ocular reflex adaptation, a sensorimotor model of learning. , 1995, Journal of neurophysiology.

[35]  M. Ito,et al.  Subdural application of hemoglobin to the cerebellum blocks vestibuloocular reflex adaptation. , 1991, Neuroreport.

[36]  Yue Zhang,et al.  Regulation of Cell Polarity and Protrusion Formation by Targeting RhoA for Degradation , 2003, Science.

[37]  Ka Wan Li,et al.  Proteomics of synapse , 2006, Analytical and bioanalytical chemistry.

[38]  Hiroshi Imamizu,et al.  Human cerebellar activity reflecting an acquired internal model of a new tool , 2000, Nature.

[39]  H. Kasai,et al.  Structure–stability–function relationships of dendritic spines , 2003, Trends in Neurosciences.

[40]  C. Hansel,et al.  Bidirectional Parallel Fiber Plasticity in the Cerebellum under Climbing Fiber Control , 2004, Neuron.

[41]  J. Bower,et al.  An active membrane model of the cerebellar Purkinje cell II. Simulation of synaptic responses. , 1994, Journal of neurophysiology.

[42]  M. Kano,et al.  Local Calcium Release in Dendritic Spines Required for Long-Term Synaptic Depression , 2000, Neuron.

[43]  S. Itohara,et al.  Memory trace of motor learning shifts transsynaptically from cerebellar cortex to nuclei for consolidation , 2006, Neuroscience.

[44]  F. Oesch,et al.  Of mice and models: improved animal models for biomedical research. , 2002, Physiological genomics.

[45]  Kelsey C. Martin,et al.  RNA Trafficking and Local Protein Synthesis in Dendrites: An Overview , 2006, The Journal of Neuroscience.

[46]  R. Tsien,et al.  Long-term depression in cerebellar Purkinje neurons results from coincidence of nitric oxide and depolarization-induced Ca2+ transients , 1995, Neuron.

[47]  S. Sara Retrieval and reconsolidation: toward a neurobiology of remembering. , 2000, Learning & memory.

[48]  I. Hurwitz,et al.  Nitric Oxide and Memory , 2004, The Neuroscientist : a review journal bringing neurobiology, neurology and psychiatry.

[49]  James M. Bower,et al.  The Book of GENESIS , 1994, Springer New York.

[50]  D. Marr A theory of cerebellar cortex , 1969, The Journal of physiology.

[51]  Pascal Jourdain,et al.  Activity‐induced changes of spine morphology , 2002, Hippocampus.

[52]  U. Alon Network motifs: theory and experimental approaches , 2007, Nature Reviews Genetics.

[53]  J. Klafter,et al.  Anomalous diffusion spreads its wings , 2005 .

[54]  Kevin Burrage,et al.  Stochastic approaches for modelling in vivo reactions , 2004, Comput. Biol. Chem..

[55]  J. Lisman,et al.  The molecular basis of CaMKII function in synaptic and behavioural memory , 2002, Nature Reviews Neuroscience.

[56]  H. Brandstetter,et al.  Crystal structure of the catalytic domain of human atypical protein kinase C-iota reveals interaction mode of phosphorylation site in turn motif. , 2005, Journal of molecular biology.

[57]  A. Puls,et al.  Interaction of protein kinase C zeta with ZIP, a novel protein kinase C-binding protein. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[58]  Prahlad T. Ram,et al.  MAP Kinase Phosphatase As a Locus of Flexibility in a Mitogen-Activated Protein Kinase Signaling Network , 2002, Science.

[59]  J. Ferrell Self-perpetuating states in signal transduction: positive feedback, double-negative feedback and bistability. , 2002, Current opinion in cell biology.

[60]  M. Tyers,et al.  A Sophisticated Scaffold Wields a New Trick , 2006, Science.

[61]  E. Schutter,et al.  Anomalous Diffusion in Purkinje Cell Dendrites Caused by Spines , 2006, Neuron.

[62]  J. Sweatt,et al.  Mitogen-activated protein kinases in synaptic plasticity and memory , 2004, Current Opinion in Neurobiology.

[63]  John F. Crary,et al.  Protein kinase Mζ is necessary and sufficient for LTP maintenance , 2002, Nature Neuroscience.

[64]  S. Mikawa,et al.  Disruption of AMPA receptor GluR2 clusters following long‐term depression induction in cerebellar Purkinje neurons , 2000, The EMBO journal.

[65]  Sharat Jacob Vayttaden,et al.  Developing Complex Signaling Models Using GENESIS/Kinetikit , 2004, Science's STKE.

[66]  T. Sacktor,et al.  Dendritic Transport and Localization of Protein Kinase Mζ mRNA , 2004, Journal of Biological Chemistry.

[67]  M. Kawato,et al.  Modular organization of internal models of tools in the human cerebellum , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[68]  R. Huganir,et al.  Requirement of AMPA Receptor GluR2 Phosphorylation for Cerebellar Long-Term Depression , 2003, Science.

[69]  J E Ferrell,et al.  The biochemical basis of an all-or-none cell fate switch in Xenopus oocytes. , 1998, Science.

[70]  Richard F. Thompson,et al.  Multiple Memory Mechanisms in the Cerebellum? , 2006, Neuron.

[71]  Kenji Doya,et al.  What are the computations of the cerebellum, the basal ganglia and the cerebral cortex? , 1999, Neural Networks.

[72]  A. Rebollo,et al.  Physical association and functional relationship between protein kinase Cζ and the actin cytoskeleton , 1995, European journal of immunology.

[73]  Roberto Malinow,et al.  Synaptic Incorporation of AMPA Receptors during LTP Is Controlled by a PKC Phosphorylation Site on GluR1 , 2006, Neuron.

[74]  M. Snyder,et al.  Charging it up: global analysis of protein phosphorylation. , 2006, Trends in genetics : TIG.

[75]  G. Eichele,et al.  Differential expression of atypical PKCs in the adult mouse brain. , 2004, Brain research. Molecular brain research.

[76]  E. Boyden,et al.  Selective Engagement of Plasticity Mechanisms for Motor Memory Storage , 2006, Neuron.

[77]  Todd Charlton Sacktor,et al.  Protein kinase M zeta synthesis from a brain mRNA encoding an independent protein kinase C zeta catalytic domain. Implications for the molecular mechanism of memory. , 2003, The Journal of biological chemistry.

[78]  Masao Ito,et al.  Climbing fibre induced depression of both mossy fibre responsiveness and glutamate sensitivity of cerebellar Purkinje cells , 1982, The Journal of physiology.

[79]  S. Wang,et al.  Graded bidirectional synaptic plasticity is composed of switch-like unitary events. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[80]  M. Kawato,et al.  Inositol 1,4,5-Trisphosphate-Dependent Ca2+ Threshold Dynamics Detect Spike Timing in Cerebellar Purkinje Cells , 2005, The Journal of Neuroscience.

[81]  G. Edelman,et al.  The NO hypothesis: possible effects of a short-lived, rapidly diffusible signal in the development and function of the nervous system. , 1990, Proceedings of the National Academy of Sciences of the United States of America.

[82]  Leslie M Loew,et al.  Computational cell biology: spatiotemporal simulation of cellular events. , 2002, Annual review of biophysics and biomolecular structure.

[83]  T. Hirano Cerebellar regulation mechanisms learned from studies on GluRδ2 , 2006, Molecular Neurobiology.

[84]  T. Boeckers,et al.  The postsynaptic density , 2006, Cell and Tissue Research.

[85]  Todd Charlton Sacktor,et al.  Memory enhancement and formation by atypical PKM activity in Drosophila melanogaster , 2002, Nature Neuroscience.

[86]  E. Klann,et al.  Biochemical mechanisms for translational regulation in synaptic plasticity , 2004, Nature Reviews Neuroscience.

[87]  M. Berridge Neuronal Calcium Signaling , 1998, Neuron.

[88]  J E Ferrell,et al.  Building a cellular switch: more lessons from a good egg. , 1999, BioEssays : news and reviews in molecular, cellular and developmental biology.

[89]  Mitchell Glickstein,et al.  Thinking about the cerebellum. , 2006, Brain : a journal of neurology.

[90]  Terrence J Sejnowski,et al.  Complexity of calcium signaling in synaptic spines. , 2002, BioEssays : news and reviews in molecular, cellular and developmental biology.

[91]  John F. Crary,et al.  Regulation of Protein Kinase Mζ Synthesis by Multiple Kinases in Long-Term Potentiation , 2007, The Journal of Neuroscience.

[92]  Masao Ito Cerebellar circuitry as a neuronal machine , 2006, Progress in Neurobiology.

[93]  Tianhai Tian,et al.  Subcellular Localization Determines MAP Kinase Signal Output , 2005, Current Biology.

[94]  J. Lancaster,et al.  Simulation of the diffusion and reaction of endogenously produced nitric oxide. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[95]  Qiang Zhou,et al.  Independent Expression of Synaptic and Morphological Plasticity Associated with Long-Term Depression , 2007, The Journal of Neuroscience.

[96]  P. Gao,et al.  Protein kinase C zeta is required for epidermal growth factor-induced chemotaxis of human breast cancer cells. , 2005, Cancer research.

[97]  T. Sacktor,et al.  Persistent activation of the zeta isoform of protein kinase C in the maintenance of long-term potentiation. , 1993, Proceedings of the National Academy of Sciences of the United States of America.

[98]  S. Wang,et al.  Confocal imaging and local photolysis of caged compounds: Dual probes of synaptic function , 1995, Neuron.

[99]  Masamitsu Iino,et al.  Ca2+-dependent inositol 1,4,5-trisphosphate and nitric oxide signaling in cerebellar neurons. , 2006, Journal of pharmacological sciences.

[100]  Joseph E LeDoux,et al.  Reply — reconsolidation: The labile nature of consolidation theory , 2000, Nature Reviews Neuroscience.

[101]  Solomon H. Snyder,et al.  S-Nitrosylation of N-Ethylmaleimide Sensitive Factor Mediates Surface Expression of AMPA Receptors , 2005, Neuron.

[102]  D. Gillespie Exact Stochastic Simulation of Coupled Chemical Reactions , 1977 .

[103]  S. B. Kater,et al.  Dendritic spines: cellular specializations imparting both stability and flexibility to synaptic function. , 1994, Annual review of neuroscience.

[104]  H. E. Marshall,et al.  Protein S-nitrosylation: purview and parameters , 2005, Nature Reviews Molecular Cell Biology.

[105]  D. Wilkin,et al.  Neuron , 2001, Brain Research.

[106]  Eunjoon Kim,et al.  The Interaction of Phospholipase C-β3 with Shank2 Regulates mGluR-mediated Calcium Signal* , 2005, Journal of Biological Chemistry.

[107]  G. Lynch,et al.  LTP consolidation: Substrates, explanatory power, and functional significance , 2007, Neuropharmacology.

[108]  Yuan Qi,et al.  Modularity and Dynamics of Cellular Networks , 2006, PLoS Comput. Biol..

[109]  Bernard J. Gersh,et al.  Chronic coronary artery disease , 2018 .

[110]  Kathy Chen,et al.  Network dynamics and cell physiology , 2001, Nature Reviews Molecular Cell Biology.

[111]  F. Metzger,et al.  Protein kinase C: Its role in activity-dependent purkinje cell dendritic development and plasticity , 2003, The Cerebellum.

[112]  D. Favarato,et al.  Chronic coronary artery disease , 1999 .

[113]  E. Boyden,et al.  Cerebellum-dependent learning: the role of multiple plasticity mechanisms. , 2004, Annual review of neuroscience.

[114]  F. Plattner,et al.  αCaMKII autophosphorylation: a fast track to memory , 2006, Trends in Neurosciences.

[115]  M. Yuzaki,et al.  A mechanism underlying AMPA receptor trafficking during cerebellar long-term potentiation. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[116]  Shin Ishii,et al.  Local signaling with molecular diffusion as a decoder of Ca2+ signals in synaptic plasticity , 2005, Molecular Systems Biology.

[117]  D. Kleinfeld,et al.  Reversing cerebellar long-term depression , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[118]  Sabina Hrabetova,et al.  Bidirectional Regulation of Protein Kinase Mζ in the Maintenance of Long-Term Potentiation and Long-Term Depression , 1996, The Journal of Neuroscience.

[119]  S. Wang,et al.  Coincidence detection in single dendritic spines mediated by calcium release , 2000, Nature Neuroscience.

[120]  M. Kawato,et al.  Behavioral/systems/cognitive Functional Magnetic Resonance Imaging Examination of Two Modular Architectures for Switching Multiple Internal Models , 2022 .

[121]  A. Gittis,et al.  Intrinsic and synaptic plasticity in the vestibular system , 2006, Current Opinion in Neurobiology.

[122]  Thomas Knöpfel,et al.  An NMDA Receptor/Nitric Oxide Cascade in Presynaptic Parallel Fiber–Purkinje Neuron Long-Term Potentiation , 2007, The Journal of Neuroscience.

[123]  M. Iino,et al.  Biphasic Ca2+ dependence of inositol 1,4,5-trisphosphate-induced Ca release in smooth muscle cells of the guinea pig taenia caeci , 1990, The Journal of general physiology.

[124]  T. Bartol,et al.  Monte Carlo Methods for Simulating Realistic Synaptic Microphysiology Using MCell , 2000 .

[125]  S. Shen-Orr,et al.  Network motifs: simple building blocks of complex networks. , 2002, Science.

[126]  Y. Dudai,et al.  Rapid Erasure of Long-Term Memory Associations in the Cortex by an Inhibitor of PKMζ , 2007, Science.

[127]  D. Clapham,et al.  Calcium signaling , 1995, Cell.

[128]  J. Henson,et al.  Plasticity , 2010, Neurology.

[129]  P. Bork,et al.  Systematic Discovery of In Vivo Phosphorylation Networks , 2007, Cell.

[130]  M. Iino,et al.  Reduced IP3 sensitivity of IP3 receptor in Purkinje neurons , 2001, Neuroreport.

[131]  S. Grant,et al.  The synapse proteome and phosphoproteome: a new paradigm for synapse biology. , 2006, Biochemical Society transactions.

[132]  Erik De Schutter,et al.  Computational neuroscience : realistic modeling for experimentalists , 2000 .

[133]  D. Linden,et al.  A Late Phase of Cerebellar Long-Term Depression Requires Activation of CaMKIV and CREB , 1999, Neuron.

[134]  D. Linden,et al.  Double dissociation between long-term depression and dendritic spine morphology in cerebellar Purkinje cells , 2007, Nature Neuroscience.

[135]  Todd Charlton Sacktor,et al.  Dendritic transport and localization of protein kinase Mzeta mRNA: implications for molecular memory consolidation. , 2004, The Journal of biological chemistry.

[136]  José María Delgado-García,et al.  Acquisition, Consolidation, Reconsolidation, and Extinction of Eyelid Conditioning Responses Require De Novo Protein Synthesis , 2005, The Journal of Neuroscience.

[137]  D. Linden,et al.  A Protein Synthesis–Dependent Late Phase of Cerebellar Long-Term Depression , 1996, Neuron.

[138]  E. Elion,et al.  MAP kinase pathways , 2005, Journal of Cell Science.

[139]  B. Kholodenko,et al.  Signaling switches and bistability arising from multisite phosphorylation in protein kinase cascades , 2004, The Journal of cell biology.

[140]  M. Tyers,et al.  Cell signaling. A sophisticated scaffold wields a new trick. , 2006, Science.

[141]  D. Koshland,et al.  An amplified sensitivity arising from covalent modification in biological systems. , 1981, Proceedings of the National Academy of Sciences of the United States of America.

[142]  Y. Dudai The neurobiology of consolidations, or, how stable is the engram? , 2004, Annual review of psychology.

[143]  G. Nappi,et al.  Nitroglycerin enhances cGMP expression in specific neuronal and cerebrovascular structures of the rat brain , 2004, Journal of Chemical Neuroanatomy.

[144]  Jenny Libien,et al.  Protein Kinase Mζ Synthesis from a Brain mRNA Encoding an Independent Protein Kinase Cζ Catalytic Domain , 2003, Journal of Biological Chemistry.

[145]  K. Svoboda,et al.  Structure and function of dendritic spines. , 2002, Annual review of physiology.

[146]  B. Webb,et al.  Protein kinase C isoenzymes: a review of their structure, regulation and role in regulating airways smooth muscle tone and mitogenesis , 2000, British journal of pharmacology.

[147]  A. Barabasi,et al.  Network biology: understanding the cell's functional organization , 2004, Nature Reviews Genetics.

[148]  W. Abraham,et al.  Memory retention – the synaptic stability versus plasticity dilemma , 2005, Trends in Neurosciences.

[149]  M. Yuzaki The δ2 glutamate receptor: a key molecule controlling synaptic plasticity and structure in Purkinje cells , 2004, The Cerebellum.

[150]  Mary B. Kennedy,et al.  Spine architecture and synaptic plasticity , 2005, Trends in Neurosciences.

[151]  J. Montgomery,et al.  Discrete synaptic states define a major mechanism of synapse plasticity , 2004, Trends in Neurosciences.

[152]  Brad E. Pfeiffer,et al.  Current Advances in Local Protein Synthesis and Synaptic Plasticity , 2006, The Journal of Neuroscience.

[153]  Xiao-Jing Wang,et al.  The Stability of a Stochastic CaMKII Switch: Dependence on the Number of Enzyme Molecules and Protein Turnover , 2005, PLoS biology.

[154]  Upinder S. Bhalla,et al.  Adaptive stochastic-deterministic chemical kinetic simulations , 2004, Bioinform..

[155]  M. Deutscher,et al.  Efficient Mammalian Protein Synthesis Requires an Intact F-Actin System* , 1997, The Journal of Biological Chemistry.

[156]  Jehoshua Bruck,et al.  Scaffold proteins may biphasically affect the levels of mitogen-activated protein kinase signaling and reduce its threshold properties. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[157]  F. Crick Memory and molecular turnover. , 1984, Nature.

[158]  S. Grant,et al.  Proteomics in postgenomic neuroscience: the end of the beginning , 2004, Nature Neuroscience.

[159]  Bernard J. Gersh,et al.  Treatment of Hypertension in the Prevention and Management of Ischemic Heart Disease: A Scientific Statement From the American Heart Association Council for High Blood Pressure Research and the Councils on Clinical Cardiology and Epidemiology and Prevention , 2007, Circulation.

[160]  E. Schuman,et al.  Dendritic Protein Synthesis, Synaptic Plasticity, and Memory , 2006, Cell.

[161]  J. Bower,et al.  An active membrane model of the cerebellar Purkinje cell. I. Simulation of current clamps in slice. , 1994, Journal of neurophysiology.

[162]  R. Albert Scale-free networks in cell biology , 2005, Journal of Cell Science.

[163]  U. Bhalla,et al.  Emergent properties of networks of biological signaling pathways. , 1999, Science.

[164]  J. Albus A Theory of Cerebellar Function , 1971 .

[165]  Rafael Yuste,et al.  From form to function: calcium compartmentalization in dendritic spines , 2000, Nature Neuroscience.

[166]  Mitsuo Kawato,et al.  Nitric Oxide Regulates Input Specificity of Long-Term Depression and Context Dependence of Cerebellar Learning , 2006, PLoS Comput. Biol..

[167]  Chi-Ying F. Huang,et al.  Ultrasensitivity in the mitogen-activated protein kinase cascade. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[168]  F. Crépel,et al.  Cellular mechanisms of cerebellar LTD , 1998, Trends in Neurosciences.

[169]  Masao Ito The molecular organization of cerebellar long-term depression , 2002, Nature Reviews Neuroscience.

[170]  Henrik Jörntell,et al.  Synaptic Memories Upside Down: Bidirectional Plasticity at Cerebellar Parallel Fiber-Purkinje Cell Synapses , 2006, Neuron.

[171]  R. Carroll,et al.  AMPAR exocytosis through NO modulation of PICK1 , 2007, Neuropharmacology.

[172]  G. Augustine,et al.  Local Calcium Signaling in Neurons , 2003, Neuron.

[173]  J. Ferrell Tripping the switch fantastic: how a protein kinase cascade can convert graded inputs into switch-like outputs. , 1996, Trends in biochemical sciences.

[174]  M. Kawato,et al.  Cerebellar Plasticity and the Ocular Following Response , 2002, Annals of the New York Academy of Sciences.

[175]  L. Abbott,et al.  Cascade Models of Synaptically Stored Memories , 2005, Neuron.

[176]  W. Kolch Coordinating ERK/MAPK signalling through scaffolds and inhibitors , 2005, Nature Reviews Molecular Cell Biology.

[177]  Mitsuo Kawato,et al.  From ‘Understanding the Brain by Creating the Brain’ towards manipulative neuroscience , 2008, Philosophical Transactions of the Royal Society B: Biological Sciences.

[178]  K. Shibuki,et al.  Dynamic properties of nitric oxide release from parallel fibres in rat cerebellar slices. , 1997, The Journal of physiology.

[179]  E. Knudsen Supervised learning in the brain , 1994, The Journal of neuroscience : the official journal of the Society for Neuroscience.

[180]  D. Zhelev,et al.  Chemoattractant receptor-stimulated F-actin polymerization in the human neutrophil is signaled by 2 distinct pathways. , 2003, Blood.

[181]  R Llinás,et al.  The cerebellum, LTD, and memory: alternative views. , 1997, Learning & memory.

[182]  伊藤 正男 The cerebellum and neural control , 1984 .

[183]  Muffy Calder,et al.  When kinases meet mathematics: the systems biology of MAPK signalling , 2005, FEBS letters.

[184]  K. Mikoshiba Inositol 1,4,5‐trisphosphate (IP3) receptors and their role in neuronal cell function , 2006, Journal of neurochemistry.

[185]  U. Bhalla Signaling in small subcellular volumes. I. Stochastic and diffusion effects on individual pathways. , 2004, Biophysical journal.

[186]  R. Anwyl,et al.  Evidence for involvement of the neuronal isoform of nitric oxide synthase during induction of long-term potentiation and long-term depression in the rat dentate gyros in vitro , 1997, Neuroscience.

[187]  E. Kandel,et al.  Transient expansion of synaptically connected dendritic spines upon induction of hippocampal long-term potentiation. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[188]  P. Greengard,et al.  Thr123 of rat G-substrate contributes to its action as a protein phosphatase inhibitor , 2003, Neuroscience Research.

[189]  Wade G. Regehr,et al.  Timing dependence of the induction of cerebellar LTD , 2008, Neuropharmacology.

[190]  T. Teyler Long-term potentiation and memory. , 1987, International journal of neurology.

[191]  E. Wimmer,et al.  MAP Kinase Phosphatase As a Locus of Flexibility in a Mitogen-Activated Protein Kinase Signaling Network , 2022 .

[192]  Karim Nader,et al.  Memory traces unbound , 2003, Trends in Neurosciences.

[193]  P. Ascher,et al.  Presynaptic N-methyl-D-aspartate receptors at the parallel fiber-Purkinje cell synapse. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[194]  L. Loew,et al.  Modeling and analysis of calcium signaling events leading to long-term depression in cerebellar Purkinje cells. , 2005, Biophysical journal.

[195]  M. Ito,et al.  Protein phosphatase 2A inhibition induces cerebellar long-term depression and declustering of synaptic AMPA receptor. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[196]  N. Hartell Parallel fiber plasticity , 2008, The Cerebellum.

[197]  Chris I. De Zeeuw,et al.  αCaMKII Is Essential for Cerebellar LTD and Motor Learning , 2006, Neuron.

[198]  Masao Ito Mechanisms of motor learning in the cerebellum 1 1 Published on the World Wide Web on 24 November 2000. , 2000, Brain Research.

[199]  Xiaobing Chen,et al.  Distribution of Postsynaptic Density (PSD)-95 and Ca2+/Calmodulin-Dependent Protein Kinase II at the PSD , 2003, The Journal of Neuroscience.

[200]  M. Kawato,et al.  Exploration of Signal Transduction Pathways in Cerebellar Long-Term Depression by Kinetic Simulation , 2001, The Journal of Neuroscience.

[201]  Barbara Calabrese,et al.  Development and regulation of dendritic spine synapses. , 2006, Physiology.

[202]  Kazushi Fujimoto,et al.  Number and Density of AMPA Receptors in Individual Synapses in the Rat Cerebellum as Revealed by SDS-Digested Freeze-Fracture Replica Labeling , 2007, The Journal of Neuroscience.

[203]  D. Baudendistel Heart Disease A Textbook of Cardiovascular Medicine , 1993 .

[204]  Jason A. Papin,et al.  Reconstruction of cellular signalling networks and analysis of their properties , 2005, Nature Reviews Molecular Cell Biology.

[205]  D. Storm,et al.  Making New Connections Role of ERK/MAP Kinase Signaling in Neuronal Plasticity , 1999, Neuron.

[206]  R. Huganir,et al.  MAPK cascade signalling and synaptic plasticity , 2004, Nature Reviews Neuroscience.

[207]  D. Yanagihara,et al.  Nitric oxide plays a key role in adaptive control of locomotion in cat. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[208]  Shinya Kuroda,et al.  Prediction and validation of the distinct dynamics of transient and sustained ERK activation , 2005, Nature Cell Biology.

[209]  Wade G. Regehr,et al.  Endocannabinoids Control the Induction of Cerebellar LTD , 2005, Neuron.

[210]  J. Sanes,et al.  Can molecules explain long-term potentiation? , 1999, Nature Neuroscience.

[211]  Per Jesper Sjöström,et al.  Novel presynaptic mechanisms for coincidence detection in synaptic plasticity , 2006, Current Opinion in Neurobiology.