The complexity, challenges and benefits of comparing two transporter classification systems in TCDB and Pfam
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Robert D. Finn | Marco Punta | Milton H. Saier | Penny C. Coggill | Jaina Mistry | Zachary Chiang | Åke Västermark
[1] Robert Fredriksson,et al. Functional specialization in nucleotide sugar transporters occurred through differentiation of the gene cluster EamA (DUF6) before the radiation of Viridiplantae , 2011, BMC Evolutionary Biology.
[2] P. Brzezinski,et al. Redox-driven membrane-bound proton pumps. , 2004, Trends in biochemical sciences.
[3] Geoffrey Chang,et al. X-ray structure of EmrE supports dual topology model , 2007, Proceedings of the National Academy of Sciences.
[4] Milton H Saier,et al. BioV Suite – a collection of programs for the study of transport protein evolution , 2012, The FEBS journal.
[5] Bonnie A. Wallace,et al. Structure and function of voltage-dependent ion channel regulatory β subunits , 2002 .
[6] Melissa J. Landrum,et al. RefSeq: an update on mammalian reference sequences , 2013, Nucleic Acids Res..
[7] Yi-Hung Yeh,et al. Structural characterizations of the chloroplast translocon protein Tic110 , 2013, The Plant journal : for cell and molecular biology.
[8] Charles Elkan,et al. The Transporter Classification Database: recent advances , 2008, Nucleic Acids Res..
[9] Kimberly Van Auken,et al. Recent advances in biocuration: Meeting Report from the fifth International Biocuration Conference , 2012, Database J. Biol. Databases Curation.
[10] The UniProt Consortium,et al. Update on activities at the Universal Protein Resource (UniProt) in 2013 , 2012, Nucleic Acids Res..
[11] A. Krogh,et al. Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. , 2001, Journal of molecular biology.
[12] R. MacKinnon,et al. Structure of a Voltage-Dependent K+ Channel β Subunit , 1999, Cell.
[13] David Haussler,et al. Current status and new features of the Consensus Coding Sequence database , 2013, Nucleic Acids Res..
[14] Ramana Madupu,et al. CharProtDB: a database of experimentally characterized protein annotations , 2011, Nucleic Acids Res..
[15] Robert Fredriksson,et al. Mapping the human membrane proteome : a majority of the human membrane proteins can be classified according to function and evolutionary origin , 2015 .
[16] Marco Punta,et al. An estimated 5% of new protein structures solved today represent a new Pfam family , 2013, Acta crystallographica. Section D, Biological crystallography.
[17] J. Gulbis,et al. Structure of a voltage-dependent K+ channel beta subunit. , 1999, Cell.
[18] M H Saier,et al. The drug/metabolite transporter superfamily. , 2001, European journal of biochemistry.
[19] Michael A. Hicks,et al. The Structure–Function Linkage Database , 2006, Nucleic Acids Res..
[20] A G Murzin,et al. SCOP: a structural classification of proteins database for the investigation of sequences and structures. , 1995, Journal of molecular biology.
[21] Jonathan S. Chen,et al. The Amino Acid-Polyamine-Organocation Superfamily , 2012, Journal of Molecular Microbiology and Biotechnology.
[22] E. Birney,et al. Pfam: the protein families database , 2013, Nucleic Acids Res..
[23] Marco Punta,et al. The Rough Guide to In Silico Function Prediction, or How To Use Sequence and Structure Information To Predict Protein Function , 2008, PLoS Comput. Biol..
[24] Kevin O'Connor,et al. The challenge of annotating protein sequences: The tale of eight domains of unknown function in Pfam , 2010, Comput. Biol. Chem..
[25] Gregory D. Schuler,et al. Database resources of the National Center for Biotechnology Information: update , 2004, Nucleic acids research.
[26] B. Wallace,et al. Structure and function of voltage-dependent ion channel regulatory beta subunits. , 2002, Biochemistry.
[27] David A. Lee,et al. New functional families (FunFams) in CATH to improve the mapping of conserved functional sites to 3D structures , 2012, Nucleic Acids Res..
[28] Simon Wollwage,et al. Expansion of the APC superfamily of secondary carriers , 2014, Proteins.
[29] A. Godzik,et al. Exploration of Uncharted Regions of the Protein Universe , 2009, PLoS biology.
[30] Tor Sandén,et al. Localized proton microcircuits at the biological membrane–water interface , 2006, Proceedings of the National Academy of Sciences.
[31] Milton H. Saier,et al. TCDB: the Transporter Classification Database for membrane transport protein analyses and information , 2005, Nucleic Acids Res..
[32] F. Palmieri. The mitochondrial transporter family SLC25: identification, properties and physiopathology. , 2013, Molecular aspects of medicine.
[33] Ferdinando Palmieri,et al. The peroxisomal NAD+ carrier of Arabidopsis thaliana transports coenzyme A and its derivatives , 2012, Journal of Bioenergetics and Biomembranes.
[34] María Martín,et al. Activities at the Universal Protein Resource (UniProt) , 2013, Nucleic Acids Res..
[35] Henry Chan,et al. Pathways of transport protein evolution: recent advances , 2011, Biological chemistry.