Protein Design by Sampling an Undirected Graphical Model of Residue Constraints
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[1] Chris Bailey-Kellogg,et al. Site‐directed combinatorial construction of chimaeric genes: General method for optimizing assembly of gene fragments , 2006, Proteins.
[2] Michael I. Jordan. Graphical Models , 1998 .
[3] R. Ranganathan,et al. Evolutionarily conserved pathways of energetic connectivity in protein families. , 1999, Science.
[4] Judea Pearl,et al. Probabilistic reasoning in intelligent systems - networks of plausible inference , 1991, Morgan Kaufmann series in representation and reasoning.
[5] W. P. Russ,et al. Evolutionary information for specifying a protein fold , 2005, Nature.
[6] Y. Weiss,et al. Finding the M Most Probable Configurations using Loopy Belief Propagation , 2003, NIPS 2003.
[7] Wray L. Buntine. Operations for Learning with Graphical Models , 1994, J. Artif. Intell. Res..
[8] S. Anderson,et al. Predicting the reactivity of proteins from their sequence alone: Kazal family of protein inhibitors of serine proteinases. , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[9] Bruce Randall Donald,et al. A novel ensemble-based scoring and search algorithm for protein redesign, and its application to modify the substrate specificity of the gramicidin synthetase A phenylalanine adenylation enzyme , 2004, RECOMB.
[10] Chris Bailey-Kellogg,et al. Algorithms for selecting breakpoint locations to optimize diversity in protein engineering by site-directed protein recombination. , 2007, Computational systems bioinformatics. Computational Systems Bioinformatics Conference.
[11] L. Looger,et al. Computational design of receptor and sensor proteins with novel functions , 2003, Nature.
[12] D. Baker,et al. Design of a Novel Globular Protein Fold with Atomic-Level Accuracy , 2003, Science.
[13] S. L. Mayo,et al. De novo protein design: fully automated sequence selection. , 1997, Science.
[14] Gregory Stephanopoulos,et al. A linguistic model for the rational design of antimicrobial peptides , 2006, Nature.
[15] Eric P. Xing,et al. Free Energy Estimates of All-Atom Protein Structures Using Generalized Belief Propagation , 2007, RECOMB.
[16] B. Rost,et al. Effective use of sequence correlation and conservation in fold recognition. , 1999, Journal of molecular biology.
[17] Chris Bailey-Kellogg,et al. Hypergraph Model of Multi-residue Interactions in Proteins: Sequentially-Constrained Partitioning Algorithms for Optimization of Site-Directed Protein Recombination , 2006, RECOMB.
[18] Chris Bailey-Kellogg,et al. Algorithms for Joint Optimization of Stability and Diversity in Planning Combinatorial Libraries of Chimeric Proteins , 2008, RECOMB.
[19] GusfieldDan. Introduction to the IEEE/ACM Transactions on Computational Biology and Bioinformatics , 2004 .
[20] W. P. Russ,et al. Natural-like function in artificial WW domains , 2005, Nature.
[21] Christopher A. Voigt,et al. Functional evolution and structural conservation in chimeric cytochromes p450: calibrating a structure-guided approach. , 2004, Chemistry & biology.
[22] Chris Bailey-Kellogg,et al. Analysis of sequence–reactivity space for protein–protein interactions , 2004, Proteins.
[23] L. H. Bradley,et al. Protein design by binary patterning of polar and nonpolar amino acids. , 1993, Methods in molecular biology.
[24] Chris Bailey-Kellogg,et al. Graphical Models of Residue Coupling in Protein Families , 2005, IEEE/ACM Transactions on Computational Biology and Bioinformatics.
[25] A. Valencia,et al. Correlated mutations contain information about protein-protein interaction. , 1997, Journal of molecular biology.