Pan-cancer analysis of whole genomes

Steven J. M. Jones | Nuno A. Fonseca | Icgc | Gary D Bader | Benjamin J. Raphael | Allison P. Heath | Christopher A. Miller | Natalie S. Fox | Calvin Wing Yiu Chan | Joshua M. Stuart | Brian D. O’Connor | Javier Bartolomé Rodriguez | Keith A. Boroevich | Angela N. Brooks | Niall J. Byrne | Michael C. Heinold | Jongwhi H. Hong | George L. Mihaiescu | Richard A. Moore | Richard C. Sallari | David T. W. Jones | Miranda D. Stobbe | Ayellet V. Segrè | Timothy A Beck | Catherine A. Shang | Stefan G. Stark | Matthew H Bailey | Nicola D. Roberts | Christopher M. Lalansingh | Maximillian G. Marin | Fabien C. Lamaze | Lisle E. Mose | Lincoln D. Stein | Dale W. Garsed | Patrick D. McGillivray | Jake June-Koo Lee | Steven A. Roberts | Takafumi N. Yamaguchi | Jules N. A. Kerssemakers | Zachary J. Heins | Stephenie D. Prokopec | Gisela Mir Arnau | Mi Ni Huang | Eun Pyo Hong | Veronica Y. Sabelnykova | Sheila M. Reynolds | D. Haussler | O. Delaneau | K. Cibulskis | S. Gabriel | E. Birney | E. Lander | M. Gerstein | C. Sander | F. Markowetz | R. Wilson | Manolis Kellis | A. Valencia | A. Prasad | S. Ishikawa | D. Komura | X. Estivill | H. Aburatani | R. Fulton | L. Matthews | E. Mardis | T. Pons | R. Gibbs | P. Spellman | A. Butte | T. Hudson | G. Getz | M. Meyerson | Zhongming Zhao | L. Fulton | J. McPherson | J. Marks | Huanming Yang | Jian Wang | S. Brunak | D. Torrents | N. Habermann | Jun Yu | X. Hua | A. Hobolth | S. Tavaré | D. Schadendorf | C. von Kalle | P. Stadler | L. Ohno-Machado | K. Jegalian | A. Rosenwald | G. Rätsch | R. Eils | Q. Morris | T. Rausch | Faraz Hach | C. Bustamante | R. Sarin | M. Ringnér | M. Rubin | C. Perou | S. Heath | R. Grossman | J. Weinstein | G. Mills | G. Reifenberger | A. Børresen-Dale | P. Park | M. Stratton | M. Ghori | K. Ahn | Masakazu Yamamoto | M. J. van de Vijver | L. V. van't Veer | S. Shringarpure | P. Awadalla | Arnoud Boot | Erwin G. Van Meir | T. Mikkelsen | K. Aldape | D. Muzny | L. Lewis | D. Wheeler | L. Ding | M. McLellan | M. Wendl | Heather K. Schmidt | M. Lawrence | R. Beroukhim | L. Garraway | P. Laird | L. Cope | D. Weisenberger | S. Baylin | N. Socci | N. Schultz | D. Hayes | K. Hoadley | S. Balu | Yan Shi | T. Shelton | D. Gerhard | M. Ferguson | W. Klapper | R. Siebert | A. López-Guillermo | E. Campo | G. Ott | D. Berney | J. Kench | T. H. van der Kwast | A. Brazma | M. Brock | T. Ley | T. Marquès-Bonet | S. C. Sahinalp | J. Korbel | Xiuqing Zhang | J. Simpson | B. Berman | J. Schein | M. Wilkerson | H. Xue | V. Ferretti | T. Tsunoda | B. Knoppers | C. Stewart | K. Ye | Ekta Khurana | J. S. Pedersen | B. O'neill | Kui Wu | F. M. De La Vega | P. Futreal | O. Harismendy | C. Collins | P. Campbell | S. O'meara | L. Stebbings | J. Teague | A. Menzies | D. Turner | P. Edwards | M. Cazzola | S. Chanock | W. Huber | P. Boutros | J. George | D. Etemadmoghadam | N. Traficante | S. Fereday | J. Hung | Y. Chiew | A. deFazio | D. Bowtell | L. Aaltonen | C. Sotiriou | B. Karlan | C. Plass | C. Desmedt | J. Foekens | D. Larsimont | D. Louis | M. Marra | N. Chatterjee | J. Pearson | M. Kool | P. Flicek | C. Wadelius | G. Bourque | N. Thiessen | A. Berchuck | A. Sieuwerts | H. Barr | Hongtu Zhu | H. Pickett | R. Eeles | Z. Kote-Jarai | F. Hamdy | D. Neal | Yong-jie Lu | D. Leongamornlert | V. Khoo | A. Thompson | C. Ogden | C. Cooper | D. Easton | N. Shah | G. Hanna | H. Lehrach | I. Shmulevich | S. Yachida | R. Hruban | C. Iacobuzio-Donahue | K. Dutton-Regester | D. Bigner | P. Vyas | C. Morrison | V. Hovestadt | R. Holt | A. G. Robertson | Angela Tam | S. Schreiber | S. Morganella | Nilgun Donmez | R. Bristow | P. Mieczkowski | O. Myklebost | S. Miyano | J. Haber | B. Niu | M. Smid | J. Martens | Sarah-Jane Schramm | G. Mann | J. Huse | T. Visakorpi | Hui Shen | Rory Johnson | J. Parker | P. Tarpey | D. Wedge | S. Nik-Zainal | Sancha Martin | L. Yates | E. Papaemmanuil | A. Butler | Jonathan Hinton | David Jones | K. Raine | A. Langerød | M. Lee | A. Broeks | Aquila Fatima | S. Chin | G. Thomas | S. Boyault | S. Lakhani | A. Tutt | C. Caldas | J. Reis-Filho | S. Aparicio | A. Richardson | A. Gonzalez-Perez | W. Linehan | Kyle Ellrott | G. Ha | D. Huntsman | X. Puente | J. Martín-Subero | C. Rubio-Perez | M. Aymerich | M. Gut | R. Royo | H. Stunnenberg | D. Tamborero | I. Gut | C. López-Otín | J. Reimand | Guanming Wu | E. Provenzano | S. Pinder | P. Polak | L. Zou | Jaegil Kim | G. Saksena | Douglas Voet | M. Noble | Pei Lin | David I. Heiman | M. Imieliński | D. Gordenin | Jordi Deu-Pons | A. Margolin | M. Fassan | L. Mularoni | R. Sabarinathan | M. Gerstung | G. Gundem | P. Van Loo | I. Martincorena | M. Hamilton | R. Govindan | H. Hornshøj | M. Nielsen | Malene Juul | Tobias Madsen | Jianjiong Gao | E. Larsson | K. Marchal | S. Signoretti | N. Hayward | Erik P. Garrison | C. Ong | H. Davies | Juok Cho | Ville Mustonen | D. Adams | B. Teh | A. Mungall | K. Mungall | M. Field | E. Appelbaum | C. Fronick | G. Escaramís | J. Tubío | C. López | Y. Totoki | L. Alexandrov | S. Behjati | A. Biankin | Å. Borg | B. Burkhardt | F. Hosoda | B. Hutter | N. Jäger | S. Knappskog | Hiromi Nakamura | P. Northcott | M. Pajic | Manasa Ramakrishna | J. Richter | P. Rosenstiel | M. Schlesner | P. Span | A. Vincent-Salomon | N. Waddell | U. McDermott | P. Lichter | S. Grimmond | T. Shibata | S. Pfister | D. Levine | Adrian Ally | M. Balasundaram | Eric Chuah | Noreen Dhalla | Darlene Lee | Haiyan I. Li | Michael Mayo | R. Akbani | John A. Demchok | H. Sofia | Liming Yang | D. Sgroi | O. Stegle | G. Sauter | W. Isaacs | R. Cerfolio | M. Lathrop | R. Schwarz | E. Pitkänen | D. Nicol | S. Hazell | W. Rathmell | R. Thompson | C. Creighton | H. Doddapaneni | A. Cherniack | Payal Sipahimalani | R. Carlsen | J. Auman | Donghui Tan | Corbin D. Jones | S. Jefferys | T. Bodenheimer | A. Hoyle | J. Simons | Phillip H. Lai | M. Bootwalla | D. Maglinte | Hailei Zhang | N. Gehlenborg | S. Frazer | C. Benz | C. Yau | Yiling Lu | Erin E. Curley | L. Thorne | L. Boice | B. Czerniak | J. Boyd | N. Petrelli | J. Myers | R. Dhir | T. Pihl | Zhining Wang | R. Tarnuzzer | J. Zhang | Shengjie Gao | R. Shepherd | Johnf . Thompson | H. Binder | N. Cloonan | D. Taylor | Alan J. Robertson | M. Yaspo | C. Ye | Yong Zhou | Y. Shiraishi | S. Imoto | C. Semple | Shogo Yamamoto | R. Yamaguchi | L. Omberg | Fenglin Liu | I. Letunic | B. Brors | Fábio C. P. Navarro | J. Jónasson | P. Majumder | Y. Assenov | D. Lenze | M. Frenkel-Morgenstern | A. Harmanci | Hongwei Zhang | A. Kahraman | C. von Mering | T. Schlomm | H. Sültmann | F. Al-Shahrour | M. Iskar | C. Fisher | I. Popescu | O. Hofmann | A. Green | E. Mayer | Jingchun Zhu | Rolf Kabbe | Iman Sarrafi | M. R. Aure | O. Lingjærde | M. Loeffler | H. Pass | I. Cortés-Ciriano | M. Wiznerowicz | Yiwen Chen | M. Perry | Shankar Vembu | Yuan Ji | K. Chayama | A. El‐Naggar | A. Navarro | R. J. Mashl | R. Drapkin | H. Al-Ahmadie | F. Notta | N. Sidiropoulos | A. Kahles | A. Borkhardt | Youngwook Kim | Keunchil Park | M. Tsao | G. Tiao | S. Cao | P. Landgraf | R. Küppers | P. Clapham | L. Lochovsky | G. Pupo | L. Dursi | S. Singer | J. Wilmott | P. Johansson | A. Pritchard | R. Scolyer | K. Rippe | J. Choi | J. Barnholtz-Sloan | Liliana Greger | H. Kilpinen | S. Beltran | M. Birrer | J. Chien | D. Mutch | J. Rader | K. Smith-McCune | A. Sood | E. Lee | Jun Li | S. Meng | C. Farcas | Zechen Chong | Sushant Kumar | Jieming Chen | Benjamin Raeder | Jing Zhang | Wanding Zhou | M. Hollingsworth | D. Wigle | A. Scarpa | Sung‐Min Ahn | Y. S. Ju | L. Danilova | S. Heo | G. MacGrogan | S. Krishnamurthy | T. Roques | Yulia Rubanova | S. Ramalingam | R. Simon | S. Minner | T. Skelly | A. Taylor-Weiner | J. Bartlett | A. Lazar | R. Salgado | A. Thompson | A. Ehinger | G. G. Van den Eynden | J. Brock | Santiago Gonzalez | J. Gershenwald | Linghua Wang | R. Bowlby | C. Pedamallu | S. Bullman | A. I. Ojesina | Samantha J. Caesar-Johnson | Ina Felau | C. Hutter | J. Zenklusen | Jia Liu | T. DeFreitas | S. Meier | A. Hegde | Han Liang | Adam Abeshouse | J. Armenia | Ritika Kundra | Angelica Ochoa | F. Sánchez-Vega | Hongxin Zhang | Pavana Anur | Myron Peto | Denise Brooks | K. Kasaian | Yussanne Ma | S. Sadeghi | Tina Wong | C. Cibulskis | Steven E Schumacher | J. Shih | D. J. Van Den Berg | J. Roach | Matthew G. Soloway | Umadevi Veluvolu | K. Covington | Jianhong Hu | V. Korchina | Liu Xi | J. Hess | M. Cordes | M. Ittmann | X. Le | O. Potapova | G. Finocchiaro | H. Juhl | K. Kang | N. Giama | C. Moser | G. Petersen | L. Roberts | R. Broaddus | P. Hersey | V. Jakrot | C. V. van Deurzen | K. Arihiro | Jihoon Kim | L. Lovat | J. Jayaseelan | A. Chateigner | D. Hedley | L. Mirabello | J. Izarzugaza | J. Weischenfeldt | L. Heisler | M. Fraser | F. Favero | C. Lawerenz | Lixing Yang | Brian Craft | M. Peifer | Meijuan Huang | S. Bernhart | K. Burns | J. L. Fink | M. Kazanov | D. Chakravarty | R. Karlic | Q. Pan-Hammarström | J. L. Jennings | Y. Joly | B. F. Ouellette | B. Kremeyer | A. Korshunov | Chin-Lee Wu | C. Verrill | E. Musgrove | Fouad Yousif | S. Asa | N. Hiraoka | S. Jang | Zemin Zhang | C. Luchini | S. Choo | N. Camacho | Hsiao-Wei Chen | A. Patch | D. Chang | K. Kassahn | P. Bailey | A. Johns | David Miller | K. Nones | M. Quinn | T. Bruxner | Angelika N. Christ | Ivon Harliwong | Matthew J. Anderson | O. Holmes | S. Kazakoff | C. Leonard | F. Newell | N. Waddell | S. Wood | Qinying Xu | Jianmin Wu | M. Pinese | A. Nagrial | L. Chantrill | A. Chou | C. Scarlett | I. Rooman | J. Samra | N. Merrett | C. Toon | A. Barbour | N. Zeps | N. Jamieson | J. Graham | R. Lawlor | V. Corbo | C. Bassi | G. Tortora | A. Gill | C. Yung | Tsun-Po Yang | M. Goldman | A. Thorogood | M. O’Donovan | R. Fitzgerald | F. Sweep | A. D. Dei Tos | D. Craft | I. Papatheodorou | M. Keays | E. Barrera | Wojciech Bazant | Anja Füllgrabe | R. Petryszak | P. Vermeulen | L. Dirix | S. V. van Laere | H. Katoh | M. Fukayama | Yong Hou | Y. Arai | E. Harrington | M. Vazquez | G. Bova | K. Dawson | C. Herrmann | Kuan-lin Huang | Syed Haider | A. Lynch | B. Davis-Dusenbery | S. Dronov | Yanxun Xu | M. Moore | S. Gallinger | G. Romieu | N. Dhani | V. Deshpande | S. Stilgenbauer | M. Hummel | M. Szczepanowski | L. Trümper | D. Glodzik | N. Haradhvala | Esther Rheinbay | Y. Maruvka | L. Klimczak | Bernardo Rodriguez-Martin | S. Bhosle | Jorge Zamora | S. Cooke | A. Mafficini | B. Rusev | M. Scardoni | D. Antonello | S. Barbi | K. Sikora | S. Cingarlini | C. Vicentini | S. Bersani | I. Cataldo | M. Davi’ | L. Landoni | Marco Miotto | F. Duthie | Rebecca A Dagg | L. Lau | M. Simbolo | P. Pederzoli | K. Haase | A. Fujimoto | H. Nakagawa | X. Zou | P. Simpson | T. King | J. Eyfjord | G. Kong | A. Viari | D. Rosebrock | D. Livitz | Kirsten Kübler | I. Leshchiner | A. Brinkman | G. Hooijer | Hyung-Yong Kim | H. Lee | Jeong-Yeon Lee | Yilong Li | I. Pauporté | X. Pivot | C. Purdie | Kamna Ramakrishnan | F. G. Rodriguez-Gonzalez | Olafur A Stefansson | S. Tommasi | I. Treilleux | B. Tan | J. Jonkers | N. Ueno | W. Friedman | Hyung-Lae Kim | Toru Nakamura | N. Sinnott-Armstrong | S. Parsons | G. Nagae | H. Tanaka | S. Juul | E. Piñeiro-Yáñez | S. Ossowski | R. Kefford | G. Long | M. Bosenberg | H. Ohdan | M. Shackleton | A. Flanagan | B. Bjerkehagen | S. Hoffmann | H. Katai | B. Wouters | E. Kebebew | X. Su | K. Tatsuno | Joong-Won Park | O. Bathe | Andrea E Holbrook | Mario Berrios | Monique Albert | Charles Saller | D. Hübschmann | S. Wolf | M. Ueno | Huy Q. Dinh | T. Hupp | T. Carey | T. Sauer | S. Rozen | T. Zenz | D. Brewer | H. Warnatz | H. Nakagama | S. Al-Sedairy | B. Zhu | J. R. O'Neill | M. Helmy | O. Ammerpohl | J. Jacquemier | Lee Timms | M. Sam | R. Denroche | S. Serra | A. Pastore | C. Shriver | L. Mileshkin | N. Fleshner | J. Yang | S. Cordner | C. Pairojkul | P. Tan | P. Bavi | M. Ringel | M. Milella | J. Göke | R. Xing | Youyong Lu | N. Vasudev | D. Fan | U. Toprak | Layla Oesper | Y. Riazalhosseini | S. Hayami | Kazuhiro Maejima | H. Yamaue | T. Ushiku | K. Fong | Ken Chen | Sung-Soo Yoon | J. Tost | P. Brennan | V. Gnanapragasam | E. Rowe | J. Lagergren | J. Gossage | M. Eldridge | Keren Isaev | R. Saw | A. Spillane | J. Stretch | R. Banks | Y. Koh | D. Grabau | S. Lou | S. Waszak | L. Verbeke | M. Wright | R. Boyce | Yuan Yuan | Leng Han | I. Buchhalter | K. Kleinheinz | V. Rudneva | S. Erkek | D. Baumhoer | M. Zapatka | Yulia Newton | D. Weichenhan | Mara Rosenberg | Ø. Garred | R. Turkington | Jongsun Jung | J. Warrell | G. Scelo | C. Bell | F. Calvo | G. Nettekoven | Junjun Zhang | D. Chalmers | S. Thayer | Yingyan Yu | Juris Viksna | B. Radlwimmer | Cheng-Zhong Zhang | J. Wala | Vincent Huang | Subhajit Sengupta | Yang Yang | C. P'ng | P. Weinberger | F. Muiños | I. Reyes-Salazar | O. Pich | F. Abascal | A. Warren | J. Nangalia | T. Mitchell | Gavin W. Wilson | R. Grant | N. Grehan | S. Macrae | Deniz Demircioğlu | T. Nandi | C. Calabrese | K. Lehmann | B. Faltas | H. Kakavand | R. Ghossein | V. Reuter | N. Pennell | Y. Şenbabaoğlu | Shida Zhu | C. Massie | S. Sungalee | Shantao Li | A. Connor | N. Desai | Jiayin Wang | Venkata Yellapantula | Kin Chan | N. Saini | K. Akdemir | S. Amin | Manaswi Gupta | J. Mcpherson | Willie Yu | L. Marsden | N. Agrawal | C. Umbricht | C. Gerhauser | E. M. Liu | K. Diamanti | J. Hoell | M. Roehrl | Y. Nie | S. Hirano | Siliang Li | G. Malleo | L. Salichos | Natalie R. Davidson | I. Davis | Austin J Hepperla | Winghing Wong | Mattia Bosio | Joana Carlevaro-Fita | J. Demeulemeester | H. Whitaker | M. Tojo | I. Cutcutache | Ke Yuan | S. Malikić | Ignacio Vázquez-García | C. Foster | G. Macintyre | Marek Cmero | S. Dentro | M. Tarabichi | J. Wintersinger | A. Deshwar | Kaixian Yu | Clemency Jolly | Yu Fan | M. Fittall | Ruben M. Drews | X. Yao | Juhee Lee | Wenyi Wang | G. Jang | Vinayak Bhandari | J. Livingstone | E. Lalonde | A. Salcedo | Constance H. Li | Michelle A. Chan-Seng-Yue | Qi Wang | H. Lee-Six | Yumeng Wang | E. Bergstrom | S. Islam | D. Giri | S. Preston | Yan Zhang | A. Grundhoff | V. B. Kaiser | T. Yugawa | S. Mizuno | H. Umer | Juergen Eils | M. Huska | D. Townend | Donghoon Lee | L. Arnould | Takanori Hasegawa | R. Rabionet | L. Urban | Xingmin Liu | M. Alawi | Solomon Shorser | Michelle Dow | Eigo Shimizu | C. Gambacorti-Passerini | P. Bandopadhayay | M. Bieg | K. Oien | R. Salvia | A. Milovanovic | S. Edwards | S. Merson | N. Dennis | J. Kay | W. Faquin | J. D. de Bono | A. Holik | Alex Buchanan | L. Feuerbach | M. Schilhabel | Peter J. Gad Jan O. Joshua M. Jennifer L. Lincoln D. Mar Campbell Getz Korbel Stuart Jennings Stein | Hardeep Nahal-Bose | G. P. Nielsen | Sergei Yakneen | N. Miyoshi | Dai-Ying Wu | G. Demidov | Shuto Hayashi | Andy Cafferkey | Eva G Álvarez | José María Heredia-Genestar | Francesc Muyas | O. Drechsel | Alicia L. Bruzos | J. Temes | A. Baez-Ortega | Anthony Dibiase | S. Newhouse | Tal Shmaya | Denis Yuen | Hana Susak | S. Mayes | Lei Song | R. Koster | T. Tanskanen | D. Haan | L. Sieverling | Fruzsina Molnár-Gábor | Mark Phillips | Qian Xiang | Alfonso Muñoz | J. Gelpi | Taobo Hu | Yogesh Kumar | Eric Z. Ma | N. Paramasivam | Montserrat Puiggrós | Johannes Werner | Zhenggang Wu | A. Dunford | P. Dhingra | Ji Wan Park | C. Soulette | Yao He | Dongbing Liu | Fan Zhang | Chang Li | Xiaobo Li | Xinyue Li | J. Markowski | H. Su | Heng Xiong | Liangtao Zheng | O. Shapira | Johanna Bertl | Qianyun Guo | Axel Aretz | M. Betancourt | Christiane Buchholz | C. Chomienne | Michael Dunn | Stuart Edmonds | E. Green | Shailja Gupta | N. Jones | Laura Planko | David Scott | K. Shimizu | K. VijayRaghavan | B. Aminou | Javier Bartolome | Zhaohong Chen | Sunghoon Cho | Wan Choi | Nodirjon Fayzullaev | Sinisa Ivkovic | S. Jeon | W. Jiao | Hyunghwan Kim | M. Koscher | Antonios Koures | Milena Kovačević | S. Mijalkovic | Ana Mijalkovic Mijalkovic-Lazic | Mia Nastic | J. Nicholson | D. Ocana | Kazuhiro Ohi | Manuel Prinz | P. Radović | Charlie Short | Jonathan Spring | Adam Struck | N. Tijanic | David Vicente | Ashley Williams | Youngchoon Woo | Adam Wright | T. A. Johnson | Jean-Rémi Trotta | J. Whalley | Shadrielle M. G. Espiritu | Yi Huang | J. Barenboim | J. Frigola | Ermin Hodzic | Chen Hong | R. Juul | J. K. Kim | Jan Komorowski | A. Lanzós | Xiaotong Li | Ziao Lin | Alexander Martínez-Fundichely | William Meyerson | M. Paczkowska | Kiejung Park | Sergio Pulido-Tamayo | M. Reyna | Ciyue Shen | Raunak Shrestha | Shimin Shuai | Liis Uusküla-Reimand | Lina Wadi | Xuanping Zhang | Charles D Imbusch | H. Kretzmer | John P. Busanovich | Ana Dueso-Barroso | Kiran Kumar | R. Scully | Izar Villasante | A. Ng | Yang Wu | Tian Xia | Gurnit Atwal | Mamoru Kato | Jaclyn Smith | Ren X. Sun | Kevin Thai | Derek W. Wright | E. Christie | Yupeng Cun | Lara Jerman | Ruian Shi | S. Shin | O. Spiro | Masashi Fujita | Mitsuhiro Komura | Fan Yang | C. Yoon | I. Borozan | K. Alsop | P. Cowin | A. Hamilton | C. Kennedy | C. Mitchell | H. Thorne | R. Vedururu | P. Waring | E. Sereni | Morgan L. Taschuk | A. Behren | Hazel Burke | J. Cebon | R. De Paoli-Iseppi | Anna M. Fitzgerald | Ping Shang | V. Tembe | R. Vilain | D. Chadwick | S. Cleary | Karolina M. Czajka | Jenna Eagles | J. Johns | S. Kalimuthu | S. Liang | I. Lungu | Xuemei Luo | Faridah Mbabaali | T. McPherson | Jessica K. Miller | Daniel M Pasternack | Iris Selander | Sagedeh Shahabi | Julie M. Wilson | A. Meng | Yu-Jia Shiah | Shuai Ding | Lin Li | Xiao-He Xiao | Shanlin Yang | L. Létourneau | H. Hilmarsdóttir | A. Stenhouse | B. Wong | Sietse M. Aukema | A. Bergmann | Christoph Borst | A. Claviez | Maria Elisabeth Goebler | A. Haake | S. Haas | Martin Hansmann | Dennis Karsch | M. Kneba | M. Kreuz | D. Kube | L. Mantovani-Löffler | P. Möller | M. Rohde | P. Staib | R. Wagener | N. Biswas | A. Maitra | G. Bonizzato | C. Cantù | Sonia Grimaldi | G. Marchegiani | S. Paiella | A. Pea | A. Ruzzenente | Nicola Sperandio | N. Hama | H. Ojima | T. Okusaka | Tomoko Urushidate | Hirofumi Rokutan | M. Saito-Adachi | Akihiro Suzuki | H. Taniguchi | H. Aikata | S. Ariizumi | M. Furuta | K. Gotoh | Y. Kawakami | Kaoru Nakano | Aya Sasaki-Oku | N. Khuntikeo | F. Amary | N. Pillay | R. Tirabosco | O. Zaikova | J. Boultwood | D. Bowen | E. Hellstrôm-Lindberg | L. Malcovati | Y. Ang | D. Beardsmore | S. Hayes | David Khoo | S. Puig | Grant Sanders | S. Sothi | O. Tucker | T. Underwood | I. Welch | D. Cahill | T. Dudderidge | P. Gill | Steve Hawkins | W. Howat | K. Karászi | Pardeep Kumar | Adam Lambert | N. Livni | H. Luxton | A. Ng | Sarah Thomas | N. Van As | V. Chandan | Carmen Gomez | H. Kim | F. Liu | Lisa Lype | T. Matthew | K. McCune | Peter H. O’Donnell | Raja S Seethala | B. Winterhoff

[1]  Lincoln D Stein,et al.  The International Cancer Genome Consortium Data Portal , 2019, Nature Biotechnology.

[2]  David Young,et al.  Faculty Opinions recommendation of Integrative analysis of 111 reference human epigenomes. , 2019, Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature.

[3]  Icgc,et al.  A deep learning system can accurately classify primary and metastatic cancers based on patterns of passenger mutations , 2019 .

[4]  Ville Mustonen,et al.  The repertoire of mutational signatures in human cancer , 2018, Nature.

[5]  R. Eils,et al.  The landscape of viral associations in human cancers , 2018, bioRxiv.

[6]  N. Lennon,et al.  DeTiN : Overcoming Tumor in Normal Contamination , 2018, Nature Methods.

[7]  Peter J. Park,et al.  Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing , 2018, bioRxiv.

[8]  Mary Goldman,et al.  The UCSC Xena platform for public and private cancer genomics data visualization and interpretation , 2018, bioRxiv.

[9]  Steven J. M. Jones,et al.  Comprehensive Characterization of Cancer Driver Genes and Mutations , 2018, Cell.

[10]  Steven J. M. Jones,et al.  Oncogenic Signaling Pathways in The Cancer Genome Atlas. , 2018, Cell.

[11]  Peter W. Laird,et al.  Cell-of-Origin Patterns Dominate the Molecular Classification of 10,000 Tumors from 33 Types of Cancer , 2018, Cell.

[12]  L. Shlush Age-related clonal hematopoiesis. , 2018, Blood.

[13]  Nuno A. Fonseca,et al.  Expression Atlas: gene and protein expression across multiple studies and organisms , 2017, Nucleic Acids Res..

[14]  Benjamin J. Raphael,et al.  The evolutionary history of 2,658 cancers , 2017, Nature.

[15]  A. Katsarou,et al.  Reporting for specific materials, systems and methods , 2018 .

[16]  Chuang Tan,et al.  Universal Patterns of Selection in Cancer and Somatic Tissues , 2018, Cell.

[17]  F. Supek,et al.  Clustered Mutation Signatures Reveal that Error-Prone DNA Repair Targets Mutations to Active Genes , 2017, Cell.

[18]  Nuno A. Fonseca,et al.  Comprehensive molecular characterization of mitochondrial genomes in human cancers , 2017, bioRxiv.

[19]  Roland Eils,et al.  The whole-genome landscape of medulloblastoma subtypes , 2017, Nature.

[20]  Roland Eils,et al.  Genomic footprints of activated telomere maintenance mechanisms in cancer , 2017, bioRxiv.

[21]  Trevor J Pugh,et al.  Recurrent and functional regulatory mutations in breast cancer , 2017, Nature.

[22]  Michael P. Schroeder,et al.  Cancer Genome Interpreter annotates the biological and clinical relevance of tumor alterations , 2017, Genome Medicine.

[23]  Catherine A. Shang,et al.  Whole-genome landscapes of major melanoma subtypes , 2017, Nature.

[24]  E. Birney,et al.  HRDetect is a predictor of BRCA1 and BRCA2 deficiency based on mutational signatures , 2017, Nature Medicine.

[25]  Shivashankar H. Nagaraj,et al.  Whole-genome landscape of pancreatic neuroendocrine tumours , 2017, Nature.

[26]  Xin Hu,et al.  Systematic analysis of telomere length and somatic alterations in 31 cancer types , 2017, Nature Genetics.

[27]  Inigo Martincorena,et al.  Precision oncology for acute myeloid leukemia using a knowledge bank approach , 2017, Nature Genetics.

[28]  Joachim Weischenfeldt,et al.  SvABA: genome-wide detection of structural variants and indels by local assembly , 2018, Genome research.

[29]  Benedict Paten,et al.  The Dockstore: enabling modular, community-focused sharing of Docker-based genomics tools and workflows , 2017, F1000Research.

[30]  I. Petersen,et al.  Pan-cancer analysis of somatic copy-number alterations implicates IRS4 and IGF2 in enhancer hijacking , 2016, Nature Genetics.

[31]  David Jones,et al.  cgpCaVEManWrapper: Simple Execution of CaVEMan in Order to Detect Somatic Single Nucleotide Variants in NGS Data , 2016, Current protocols in bioinformatics.

[32]  Andrew Menzies,et al.  ascatNgs: Identifying Somatically Acquired Copy‐Number Alterations from Whole‐Genome Sequencing Data , 2016, Current protocols in bioinformatics.

[33]  Steven J. M. Jones,et al.  The International Human Epigenome Consortium: A Blueprint for Scientific Collaboration and Discovery , 2016, Cell.

[34]  Bin Zhu,et al.  Edinburgh Research Explorer Association of germline variants in the APOBEC3 region with cancer risk and enrichment with APOBEC-signature mutations in tumors , 2022 .

[35]  P. A. Futreal,et al.  MuSE: accounting for tumor heterogeneity using a sample-specific error model improves sensitivity and specificity in mutation calling from sequencing data , 2016, Genome Biology.

[36]  Wang Wenyi,et al.  MuSE: accounting for tumor heterogeneity using a sample-specific error model improves sensitivity and specificity in mutation calling from sequencing data , 2016, Genome Biology.

[37]  David C. Jones,et al.  Landscape of somatic mutations in 560 breast cancer whole genome sequences , 2016, Nature.

[38]  Keith A. Boroevich,et al.  Whole-genome mutational landscape and characterization of noncoding and structural mutations in liver cancer , 2016, Nature Genetics.

[39]  Jeffrey H. Chuang,et al.  The tandem duplicator phenotype as a distinct genomic configuration in cancer , 2016, Proceedings of the National Academy of Sciences.

[40]  P. Hanawalt,et al.  Mutational Strand Asymmetries in Cancer Genomes Reveal Mechanisms of DNA Damage and Repair , 2016, Cell.

[41]  Daniel S. Day,et al.  Activation of proto-oncogenes by disruption of chromosome neighborhoods , 2015, Science.

[42]  Keiran M Raine,et al.  cgpPindel: Identifying Somatically Acquired Insertion and Deletion Events from Paired End Sequencing , 2015, Current protocols in bioinformatics.

[43]  Simon C Watkins,et al.  Telomerase activation by genomic rearrangements in high-risk neuroblastoma , 2015, Nature.

[44]  Gabor T. Marth,et al.  A global reference for human genetic variation , 2015, Nature.

[45]  Gabor T. Marth,et al.  An integrated map of structural variation in 2,504 human genomes , 2015, Nature.

[46]  Joachim Weischenfeldt,et al.  A cell-based model system links chromothripsis with hyperploidy , 2015, Molecular systems biology.

[47]  Gad Getz,et al.  An APOBEC3A hypermutation signature is distinguishable from the signature of background mutagenesis by APOBEC3B in human cancers , 2015, Nature Genetics.

[48]  I. Melero,et al.  Evolving synergistic combinations of targeted immunotherapies to combat cancer , 2015, Nature Reviews Cancer.

[49]  Jan O. Korbel,et al.  Data analysis: Create a cloud commons , 2015, Nature.

[50]  S. Tavaré,et al.  Whole-genome sequencing provides new insights into the clonal architecture of Barrett’s esophagus and esophageal adenocarcinoma , 2015, Nature Genetics.

[51]  Steven J. M. Jones,et al.  Genomic Classification of Cutaneous Melanoma , 2015, Cell.

[52]  Joshy George,et al.  Whole–genome characterization of chemoresistant ovarian cancer , 2015, Nature.

[53]  Matthew Meyerson,et al.  CHROMOTHRIPSIS FROM DNA DAMAGE IN MICRONUCLEI , 2015, Nature.

[54]  Trevor J Pugh,et al.  Oncotator: Cancer Variant Annotation Tool , 2015, Human mutation.

[55]  Frances M. G. Pearl,et al.  Therapeutic opportunities within the DNA damage response , 2015, Nature Reviews Cancer.

[56]  J. Kench,et al.  Whole genomes redefine the mutational landscape of pancreatic cancer , 2015, Nature.

[57]  Michael Q. Zhang,et al.  Integrative analysis of 111 reference human epigenomes , 2015, Nature.

[58]  Andrew Menzies,et al.  Analysis of the Genetic Phylogeny of Multifocal Prostate Cancer Identifies Multiple Independent Clonal Expansions in Neoplastic and Morphologically Normal Prostate Tissue , 2015, Nature Genetics.

[59]  Paz Polak,et al.  Cell-of-origin chromatin organization shapes the mutational landscape of cancer , 2015, Nature.

[60]  B. Vogelstein,et al.  Variation in cancer risk among tissues can be explained by the number of stem cell divisions , 2015, Science.

[61]  Benjamin J. Raphael,et al.  Pan-Cancer Network Analysis Identifies Combinations of Rare Somatic Mutations across Pathways and Protein Complexes , 2014, Nature Genetics.

[62]  Hiromi Nakamura,et al.  Trans-ancestry mutational landscape of hepatocellular carcinoma genomes , 2014, Nature Genetics.

[63]  E. Larsson,et al.  Systematic analysis of noncoding somatic mutations and gene expression alterations across 14 tumor types , 2014, Nature Genetics.

[64]  Gabor T Marth,et al.  bam.iobio: a web-based, real-time, sequence alignment file inspector , 2014, Nature Methods.

[65]  David M. Thomas,et al.  The architecture and evolution of cancer neochromosomes. , 2014, Cancer cell.

[66]  Modesto Orozco,et al.  Comprehensive characterization of complex structural variations in cancer by directly comparing genome sequence reads , 2014, Nature Biotechnology.

[67]  Edgars Celms,et al.  Variation in genomic landscape of clear cell renal cell carcinoma across Europe , 2014, Nature Communications.

[68]  Steven J. M. Jones,et al.  Integrated Genomic Characterization of Papillary Thyroid Carcinoma , 2014, Cell.

[69]  Peggy J. Farnham,et al.  Functional annotation of colon cancer risk SNPs , 2014, Nature Communications.

[70]  Lawrence A. Donehower,et al.  The somatic genomic landscape of chromophobe renal cell carcinoma. , 2014, Cancer cell.

[71]  Bin Tean Teh,et al.  Origins and functional consequences of somatic mitochondrial DNA mutations in human cancer , 2014, eLife.

[72]  Andrew Menzies,et al.  Extensive transduction of nonrepetitive DNA mediated by L1 retrotransposition in cancer genomes , 2014, Science.

[73]  G. McVean,et al.  Integrating mapping-, assembly- and haplotype-based approaches for calling variants in clinical sequencing applications , 2014, Nature Genetics.

[74]  Gary D Bader,et al.  Enhancer hijacking activates GFI1 family oncogenes in medulloblastoma , 2014, Nature.

[75]  Peter J. Campbell,et al.  C. elegans whole-genome sequencing reveals mutational signatures related to carcinogens and DNA repair deficiency , 2014, Genome research.

[76]  Michael J Sailor,et al.  Mesoporous silicon sponge as an anti-pulverization structure for high-performance lithium-ion battery anodes , 2014, Nature Communications.

[77]  A. Frank,et al.  The global spread of asbestos. , 2014, Annals of global health.

[78]  Steven J. M. Jones,et al.  Comprehensive molecular profiling of lung adenocarcinoma , 2014, Nature.

[79]  Adam A. Margolin,et al.  Assessing the clinical utility of cancer genomic and proteomic data across tumor types , 2014, Nature Biotechnology.

[80]  Terence P. Speed,et al.  Combining calls from multiple somatic mutation-callers , 2014, BMC Bioinformatics.

[81]  Gad Getz,et al.  Somatic retrotransposition in human cancer revealed by whole-genome and exome sequencing , 2014, Genome research.

[82]  Adam P Butler,et al.  Association of a germline copy number polymorphism of APOBEC3A and APOBEC3B with burden of putative APOBEC-dependent mutations in breast cancer , 2014, Nature Genetics.

[83]  Andrew Menzies,et al.  Processed pseudogenes acquired somatically during cancer development , 2014, Nature Communications.

[84]  Nazneen Rahman,et al.  Realizing the promise of cancer predisposition genes , 2014, Nature.

[85]  S. Gabriel,et al.  Discovery and saturation analysis of cancer genes across 21 tumor types , 2014, Nature.

[86]  Benjamin J. Raphael,et al.  Mutational landscape and significance across 12 major cancer types , 2013, Nature.

[87]  M. Peters,et al.  Systematic identification of trans eQTLs as putative drivers of known disease associations , 2013, Nature Genetics.

[88]  Chris Sander,et al.  Emerging landscape of oncogenic signatures across human cancers , 2013, Nature Genetics.

[89]  Steven J. M. Jones,et al.  Comprehensive molecular characterization of clear cell renal cell carcinoma , 2013, Nature.

[90]  David T. W. Jones,et al.  Signatures of mutational processes in human cancer , 2013, Nature.

[91]  Steven J. M. Jones,et al.  Integrated genomic characterization of endometrial carcinoma , 2013, Nature.

[92]  A. Sivachenko,et al.  Punctuated Evolution of Prostate Cancer Genomes , 2013, Cell.

[93]  J. Korbel,et al.  Criteria for Inference of Chromothripsis in Cancer Genomes , 2013, Cell.

[94]  J. Ferlay,et al.  Global estimates of cancer prevalence for 27 sites in the adult population in 2008 , 2013, International journal of cancer.

[95]  D. Schadendorf,et al.  TERT Promoter Mutations in Familial and Sporadic Melanoma , 2013, Science.

[96]  Lynda Chin,et al.  Highly Recurrent TERT Promoter Mutations in Human Melanoma , 2013, Science.

[97]  V. Beneš,et al.  Integrative genomic analyses reveal an androgen-driven somatic alteration landscape in early-onset prostate cancer. , 2013, Cancer cell.

[98]  A. Sivachenko,et al.  Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples , 2013, Nature Biotechnology.

[99]  Trevor J Pugh,et al.  Discovery and characterization of artifactual mutations in deep coverage targeted capture sequencing data due to oxidative DNA damage during sample preparation , 2013, Nucleic acids research.

[100]  K. Mathee,et al.  A dynamic and intricate regulatory network determines Pseudomonas aeruginosa virulence , 2012, Nucleic acids research.

[101]  S. Gabriel,et al.  Somatic rearrangements across cancer reveal classes of samples with distinct patterns of DNA breakage and rearrangement-induced hypermutability , 2012, Genome research.

[102]  R. Spang,et al.  Recurrent mutation of the ID3 gene in Burkitt lymphoma identified by integrated genome, exome and transcriptome sequencing , 2012, Nature Genetics.

[103]  Steven J. M. Jones,et al.  Comprehensive genomic characterization of squamous cell lung cancers , 2012, Nature.

[104]  Thomas Zichner,et al.  DELLY: structural variant discovery by integrated paired-end and split-read analysis , 2012, Bioinform..

[105]  Lovelace J. Luquette,et al.  Landscape of Somatic Retrotransposition in Human Cancers , 2012, Science.

[106]  B. Schuster-Böckler,et al.  Chromatin organization is a major influence on regional mutation rates in human cancer cells , 2012, Nature.

[107]  Joshua F. McMichael,et al.  The Origin and Evolution of Mutations in Acute Myeloid Leukemia , 2012, Cell.

[108]  Steven J. M. Jones,et al.  Comprehensive molecular characterization of human colon and rectal cancer , 2012, Nature.

[109]  Gabor T. Marth,et al.  Haplotype-based variant detection from short-read sequencing , 2012, 1207.3907.

[110]  Steven J. M. Jones,et al.  Comprehensive molecular portraits of human breast tumors , 2012, Nature.

[111]  Talicia Tarver,et al.  Cancer Facts & Figures 2012. American Cancer Society (ACS) , 2012 .

[112]  Yann Joly,et al.  Data Sharing in the Post-Genomic World: The Experience of the International Cancer Genome Consortium (ICGC) Data Access Compliance Office (DACO) , 2012, PLoS Comput. Biol..

[113]  Steven A. Roberts,et al.  Clustered mutations in yeast and in human cancers can arise from damaged long single-strand DNA regions. , 2012, Molecular cell.

[114]  A. Børresen-Dale,et al.  The Life History of 21 Breast Cancers , 2012, Cell.

[115]  A. Børresen-Dale,et al.  Mutational Processes Molding the Genomes of 21 Breast Cancers , 2012, Cell.

[116]  A. McKenna,et al.  Absolute quantification of somatic DNA alterations in human cancer , 2012, Nature Biotechnology.

[117]  David T. W. Jones,et al.  Genome Sequencing of Pediatric Medulloblastoma Links Catastrophic DNA Rearrangements with TP53 Mutations , 2012, Cell.

[118]  M. Stratton,et al.  Somatic SF3B1 mutation in myelodysplasia with ring sideroblasts. , 2011, The New England journal of medicine.

[119]  E. Montgomery,et al.  Prevalence of the alternative lengthening of telomeres telomere maintenance mechanism in human cancer subtypes. , 2011, The American journal of pathology.

[120]  Juliane C. Dohm,et al.  Whole-genome sequencing identifies recurrent mutations in chronic lymphocytic leukaemia , 2011, Nature.

[121]  Jian Li,et al.  Temporal dissection of tumorigenesis in primary cancers. , 2011, Cancer discovery.

[122]  A. Hauschild,et al.  Improved survival with vemurafenib in melanoma with BRAF V600E mutation. , 2011, The New England journal of medicine.

[123]  M. DePristo,et al.  A framework for variation discovery and genotyping using next-generation DNA sequencing data , 2011, Nature Genetics.

[124]  D. Hanahan,et al.  Hallmarks of Cancer: The Next Generation , 2011, Cell.

[125]  Michael R Stratton,et al.  Genomics and the continuum of cancer care. , 2011, The New England journal of medicine.

[126]  N. Carter,et al.  Massive Genomic Rearrangement Acquired in a Single Catastrophic Event during Cancer Development , 2011, Cell.

[127]  Eric S. Lander,et al.  The genomic complexity of primary human prostate cancer , 2010, Nature.

[128]  D. Altshuler,et al.  A map of human genome variation from population-scale sequencing , 2010, Nature.

[129]  M. DePristo,et al.  The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. , 2010, Genome research.

[130]  Gary D Bader,et al.  International network of cancer genome projects , 2010, Nature.

[131]  Derek Y. Chiang,et al.  The landscape of somatic copy-number alteration across human cancers , 2010, Nature.

[132]  Richard Durbin,et al.  Fast and accurate long-read alignment with Burrows–Wheeler transform , 2010, Bioinform..

[133]  E. Birney,et al.  A small cell lung cancer genome reports complex tobacco exposure signatures , 2009, Nature.

[134]  Tom Royce,et al.  A comprehensive catalogue of somatic mutations from a human cancer genome , 2010, Nature.

[135]  Prabhat Jha,et al.  Avoidable global cancer deaths and total deaths from smoking , 2009, Nature Reviews Cancer.

[136]  Kai Ye,et al.  Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads , 2009, Bioinform..

[137]  Richard Durbin,et al.  Sequence analysis Fast and accurate short read alignment with Burrows – Wheeler transform , 2009 .

[138]  Amy E. Hawkins,et al.  DNA sequencing of a cytogenetically normal acute myeloid leukemia genome , 2008, Nature.

[139]  Antony V. Cox,et al.  Identification of somatically acquired rearrangements in cancer using genome-wide massively parallel paired-end sequencing , 2008, Nature Genetics.

[140]  Philip M. Kim,et al.  Paired-End Mapping Reveals Extensive Structural Variation in the Human Genome , 2007, Science.

[141]  D. Koller,et al.  Population genomics of human gene expression , 2007, Nature Genetics.

[142]  C. Hudis Trastuzumab--mechanism of action and use in clinical practice. , 2007, The New England journal of medicine.

[143]  G. Parmigiani,et al.  The Consensus Coding Sequences of Human Breast and Colorectal Cancers , 2006, Science.

[144]  G. Collins The next generation. , 2006, Scientific American.

[145]  Leo Breiman,et al.  Stacked regressions , 2004, Machine Learning.

[146]  Yoshiki Murakami,et al.  Hepatitis B virus-related insertional mutagenesis occurs frequently in human liver cancers and recurrently targets human telomerase gene , 2003, Oncogene.

[147]  Francisco Cervantes,et al.  Imatinib compared with interferon and low-dose cytarabine for newly diagnosed chronic-phase chronic myeloid leukemia. , 2003, The New England journal of medicine.

[148]  M. Blasco,et al.  A role for the Rb family of proteins in controlling telomere length , 2002, Nature Genetics.

[149]  J. Shay,et al.  Hayflick, his limit, and cellular ageing , 2000, Nature Reviews Molecular Cell Biology.

[150]  A. Bird,et al.  The thymine glycosylase MBD4 can bind to the product of deamination at methylated CpG sites , 1999, Nature.

[151]  Stephen H. Friend,et al.  A human DNA segment with properties of the gene that predisposes to retinoblastoma and osteosarcoma , 1986, Nature.

[152]  Eugenio Santos,et al.  A point mutation is responsible for the acquisition of transforming properties by the T24 human bladder carcinoma oncogene , 1982, Nature.

[153]  Cori Bargmann,et al.  Mechanism of activation of a human oncogene , 1982, Nature.

[154]  J. Rowley A New Consistent Chromosomal Abnormality in Chronic Myelogenous Leukaemia identified by Quinacrine Fluorescence and Giemsa Staining , 1973, Nature.