An efficient Riemannian statistical shape model using differential coordinates: With application to the classification of data from the Osteoarthritis Initiative

HighlightsNovel Riemannian framework for statistical shape analysis that is able to account for the nonlinearity in shape variation.Lie group structure with closed‐form expressions guaranteeing numerical efficiency.Results on the open‐access OAI and FAUST datasets demonstrate superior performance over state‐of‐the‐art. Graphical abstract Figure. No Caption available. Abstract We propose a novel Riemannian framework for statistical analysis of shapes that is able to account for the nonlinearity in shape variation. By adopting a physical perspective, we introduce a differential representation that puts the local geometric variability into focus. We model these differential coordinates as elements of a Lie group thereby endowing our shape space with a non‐Euclidean structure. A key advantage of our framework is that statistics in a manifold shape space becomes numerically tractable improving performance by several orders of magnitude over state‐of‐the‐art. We show that our Riemannian model is well suited for the identification of intra‐population variability as well as inter‐population differences. In particular, we demonstrate the superiority of the proposed model in experiments on specificity and generalization ability. We further derive a statistical shape descriptor that outperforms the standard Euclidean approach in terms of shape‐based classification of morphological disorders.

[1]  Martin Rumpf,et al.  An Elasticity-Based Covariance Analysis of Shapes , 2011, International Journal of Computer Vision.

[2]  Alan Brunton,et al.  Review of statistical shape spaces for 3D data with comparative analysis for human faces , 2012, Comput. Vis. Image Underst..

[3]  Michael J. Black,et al.  Lie Bodies: A Manifold Representation of 3D Human Shape , 2012, ECCV.

[4]  Guido Gerig,et al.  Morphometry of anatomical shape complexes with dense deformations and sparse parameters , 2014, NeuroImage.

[5]  Mathieu Desbrun,et al.  Discrete shells , 2003, SCA '03.

[6]  Kun Zhou,et al.  Mesh editing with poisson-based gradient field manipulation , 2004, SIGGRAPH 2004.

[7]  Guido Gerig,et al.  Elastic model-based segmentation of 3-D neuroradiological data sets , 1999, IEEE Transactions on Medical Imaging.

[8]  D. Felson,et al.  Magnetic resonance imaging-based three-dimensional bone shape of the knee predicts onset of knee osteoarthritis: data from the osteoarthritis initiative. , 2013, Arthritis and rheumatism.

[9]  C. Goodall Procrustes methods in the statistical analysis of shape , 1991 .

[10]  J. Kellgren,et al.  Radiological Assessment of Osteo-Arthrosis , 1957, Annals of the rheumatic diseases.

[11]  PascucciValerio,et al.  The Helmholtz-Hodge Decomposition—A Survey , 2013 .

[12]  Stefan Zachow,et al.  Model-based Auto-Segmentation of Knee Bones and Cartilage in MRI Data , 2010 .

[13]  Lorenz T. Biegler,et al.  On the implementation of an interior-point filter line-search algorithm for large-scale nonlinear programming , 2006, Math. Program..

[14]  O. Scherzer Handbook of mathematical methods in imaging , 2011 .

[15]  Martin Rumpf,et al.  Time‐Discrete Geodesics in the Space of Shells , 2012, Comput. Graph. Forum.

[16]  Hans-Peter Seidel,et al.  Real-Time Nonlinear Shape Interpolation , 2015, ACM Trans. Graph..

[17]  Kathleen M. Robinette,et al.  The CAESAR project: a 3-D surface anthropometry survey , 1999, Second International Conference on 3-D Digital Imaging and Modeling (Cat. No.PR00062).

[18]  Hans-Peter Seidel,et al.  A Statistical Model of Human Pose and Body Shape , 2009, Comput. Graph. Forum.

[19]  H. Karcher Riemannian center of mass and mollifier smoothing , 1977 .

[20]  Martin Rumpf,et al.  Shell PCA: Statistical Shape Modelling in Shell Space , 2015, 2015 IEEE International Conference on Computer Vision (ICCV).

[21]  John W. Sammon,et al.  A Nonlinear Mapping for Data Structure Analysis , 1969, IEEE Transactions on Computers.

[22]  Stefan Zachow,et al.  Statistical Shape Modeling of Musculoskeletal Structures and Its Applications , 2016 .

[23]  M. Fréchet Les éléments aléatoires de nature quelconque dans un espace distancié , 1948 .

[24]  Timothy F. Cootes,et al.  Automated Shape and Texture Analysis for Detection of Osteoarthritis from Radiographs of the Knee , 2015, MICCAI.

[25]  Markus Gross,et al.  Deformation Transfer for Detail-Preserving Surface Editing , 2006 .

[26]  Martin Bauer,et al.  Overview of the Geometries of Shape Spaces and Diffeomorphism Groups , 2013, Journal of Mathematical Imaging and Vision.

[27]  Stefan Wesarg,et al.  3D Active Shape Model Segmentation with Nonlinear Shape Priors , 2011, MICCAI.

[28]  B. O'neill Semi-Riemannian Geometry With Applications to Relativity , 1983 .

[29]  Atsushi Saito,et al.  Joint optimization of segmentation and shape prior from level-set-based statistical shape model, and its application to the automated segmentation of abdominal organs , 2016, Medical Image Anal..

[30]  Christopher J. Taylor,et al.  Statistical models of shape - optimisation and evaluation , 2008 .

[31]  P. Thomas Fletcher,et al.  Principal geodesic analysis for the study of nonlinear statistics of shape , 2004, IEEE Transactions on Medical Imaging.

[32]  A. Munk,et al.  INTRINSIC SHAPE ANALYSIS: GEODESIC PCA FOR RIEMANNIAN MANIFOLDS MODULO ISOMETRIC LIE GROUP ACTIONS , 2007 .

[33]  Michael J. Black,et al.  FAUST: Dataset and Evaluation for 3D Mesh Registration , 2014, 2014 IEEE Conference on Computer Vision and Pattern Recognition.

[34]  Christopher J. Taylor,et al.  Specificity: A Graph-Based Estimator of Divergence , 2011, IEEE Transactions on Pattern Analysis and Machine Intelligence.

[35]  Guido Gerig,et al.  Unbiased diffeomorphic atlas construction for computational anatomy , 2004, NeuroImage.

[36]  Hans-Christian Hege,et al.  Omnidirectional displacements for deformable surfaces , 2013, Medical Image Anal..

[37]  Timothy F. Cootes,et al.  Active Shape Models-Their Training and Application , 1995, Comput. Vis. Image Underst..

[38]  Yogesh Rathi,et al.  Comparative Analysis of Kernel Methods for Statistical Shape Learning , 2006, CVAMIA.

[39]  Martin Rumpf,et al.  Variational Methods in Shape Analysis , 2015, Handbook of Mathematical Methods in Imaging.

[40]  Timothy F. Cootes,et al.  Detecting Osteophytes in Radiographs of the Knee to Diagnose Osteoarthritis , 2016, MLMI@MICCAI.

[41]  N. Ayache,et al.  Log‐Euclidean metrics for fast and simple calculus on diffusion tensors , 2006, Magnetic resonance in medicine.

[42]  Søren Hauberg,et al.  Manifold Valued Statistics, Exact Principal Geodesic Analysis and the Effect of Linear Approximations , 2010, ECCV.

[43]  P. Thomas Fletcher,et al.  Population Shape Regression from Random Design Data , 2007, 2007 IEEE 11th International Conference on Computer Vision.

[44]  Valerio Pascucci,et al.  The Helmholtz-Hodge Decomposition—A Survey , 2013, IEEE Transactions on Visualization and Computer Graphics.

[45]  Travis D. Eliason,et al.  Statistical shape modeling describes variation in tibia and femur surface geometry between Control and Incidence groups from the osteoarthritis initiative database. , 2010, Journal of biomechanics.

[46]  Olivier D. Faugeras,et al.  Distance-Based Shape Statistics , 2006, 2006 IEEE International Conference on Acoustics Speech and Signal Processing Proceedings.

[47]  Gunnar Rätsch,et al.  Kernel PCA and De-Noising in Feature Spaces , 1998, NIPS.

[48]  Bert Jüttler,et al.  Shape Metrics Based on Elastic Deformations , 2009, Journal of Mathematical Imaging and Vision.

[49]  Christoph von Tycowicz,et al.  Geometric Flows of Curves in Shape Space for Processing Motion of Deformable Objects , 2016, Comput. Graph. Forum.

[50]  A. A. Zadpoor,et al.  Statistical shape and appearance models of bones. , 2014, Bone.

[51]  P. Thomas Fletcher,et al.  Statistics of shape via principal geodesic analysis on Lie groups , 2003, 2003 IEEE Computer Society Conference on Computer Vision and Pattern Recognition, 2003. Proceedings..

[52]  Yoshinobu Sato,et al.  A Liver Atlas Using the Special Euclidean Group , 2015, MICCAI.

[53]  Hans-Peter Meinzer,et al.  Statistical shape models for 3D medical image segmentation: A review , 2009, Medical Image Anal..