Gene Copy-Number Polymorphism Caused by Retrotransposition in Humans
暂无分享,去创建一个
Matthew W. Hahn | Daniel R. Schrider | Pedro A. F. Galante | Fabio C. P. Navarro | Sandro J. de Souza | Anamaria A. Camargo | A. Camargo | Fábio C. P. Navarro | S. D. de Souza | P. Galante | R. Parmigiani | Raphael B. Parmigiani | M. Hahn | M. Hahn
[1] P. Rogalla,et al. Back to the roots of a new exon--the molecular archaeology of a SP100 splice variant. , 2000, Genomics.
[2] S Rozen,et al. Primer3 on the WWW for general users and for biologist programmers. , 2000, Methods in molecular biology.
[3] M. Adams,et al. Recent Segmental Duplications in the Human Genome , 2002, Science.
[4] M. Rieder,et al. Detection of structural variants and indels within exome data , 2011, Nature Methods.
[5] S. Liebhaber,et al. Pseudogene-mediated posttranscriptional silencing of HMGA1 can result in insulin resistance and type 2 diabetes. , 2010, Nature communications.
[6] Santhosh Girirajan,et al. Human copy number variation and complex genetic disease. , 2011, Annual review of genetics.
[7] Richard M. Clark,et al. Sequencing of natural strains of Arabidopsis thaliana with short reads. , 2008, Genome research.
[8] P. Pandolfi,et al. A coding-independent function of gene and pseudogene mRNAs regulates tumour biology , 2010, Nature.
[9] D. Hartl,et al. Chimeric genes as a source of rapid evolution in Drosophila melanogaster. , 2012, Molecular biology and evolution.
[10] Gautier Koscielny,et al. Ensembl 2012 , 2011, Nucleic Acids Res..
[11] N. Vinckenbosch,et al. Chromosomal Gene Movements Reflect the Recent Origin and Biology of Therian Sex Chromosomes , 2008, PLoS biology.
[12] A. Parle‐McDermott,et al. The former annotated human pseudogene dihydrofolate reductase-like 1 (DHFRL1) is expressed and functional , 2011, Proceedings of the National Academy of Sciences.
[13] Joshua M. Korn,et al. Integrated detection and population-genetic analysis of SNPs and copy number variation , 2008, Nature Genetics.
[14] Jimmy Lin,et al. Novel somatic mutations in heterotrimeric G proteins in melanoma , 2010, Cancer biology & therapy.
[15] D. Conrad,et al. Global variation in copy number in the human genome , 2006, Nature.
[16] N. Vinckenbosch,et al. Evolutionary fate of retroposed gene copies in the human genome. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[17] A. Camargo,et al. Sense-antisense pairs in mammals: functional and evolutionary considerations , 2007, Genome Biology.
[18] R. Guigó,et al. Transcriptome genetics using second generation sequencing in a Caucasian population , 2010, Nature.
[19] Justin O. Borevitz,et al. Natural Selection Shapes Genome-Wide Patterns of Copy-Number Polymorphism in Drosophila melanogaster , 2008, Science.
[20] U. Pannicke,et al. Dihydrofolate reductase deficiency due to a homozygous DHFR mutation causes megaloblastic anemia and cerebral folate deficiency leading to severe neurologic disease. , 2011, American journal of human genetics.
[21] Paul Scheet,et al. A fast and flexible statistical model for large-scale population genotype data: applications to inferring missing genotypes and haplotypic phase. , 2006, American journal of human genetics.
[22] Zhaohui S. Qin,et al. A second generation human haplotype map of over 3.1 million SNPs , 2007, Nature.
[23] A. Reymond,et al. Emergence of Young Human Genes after a Burst of Retroposition in Primates , 2005, PLoS biology.
[24] Mary Goldman,et al. The UCSC Genome Browser database: update 2011 , 2010, Nucleic Acids Res..
[25] Kenny Q. Ye,et al. Large-Scale Copy Number Polymorphism in the Human Genome , 2004, Science.
[26] Peter H. Sudmant,et al. Evolution of Human-Specific Neural SRGAP2 Genes by Incomplete Segmental Duplication , 2012, Cell.
[27] J. Nahon,et al. Birth of Two Chimeric Genes in the Hominidae Lineage , 2001, Science.
[28] Manuel A. S. Santos,et al. Comparative genomics of wild type yeast strains unveils important genome diversity , 2008, BMC Genomics.
[29] F. M. Huennekens,et al. The methotrexate story: a paradigm for development of cancer chemotherapeutic agents. , 1994, Advances in enzyme regulation.
[30] Jeffery P. Demuth,et al. The Evolution of Mammalian Gene Families , 2006, PloS one.
[31] Daniel R. Schrider,et al. Lower linkage disequilibrium at CNVs is due to both recurrent mutation and transposing duplications. , 2010, Molecular biology and evolution.
[32] Lucila Ohno-Machado,et al. Distinct patterns of somatic alterations in a lymphoblastoid and a tumor genome derived from the same individual , 2011, Nucleic acids research.
[33] F J Ayala,et al. Evidence for positive selection in the superoxide dismutase (Sod) region of Drosophila melanogaster. , 1994, Genetics.
[34] E. Betrán,et al. Comparative genomics reveals a constant rate of origination and convergent acquisition of functional retrogenes in Drosophila , 2007, Genome Biology.
[35] L. Chasin,et al. Isolation of Chinese hamster cell mutants deficient in dihydrofolate reductase activity. , 1980, Proceedings of the National Academy of Sciences of the United States of America.
[36] Joshua M. Korn,et al. Mapping and sequencing of structural variation from eight human genomes , 2008, Nature.
[37] S. Mccarroll,et al. Copy-number variation and association studies of human disease , 2007, Nature Genetics.
[38] R. Hudson,et al. On the divergence of alleles in nested subsamples from finite populations. , 1986, Genetics.
[39] Omer Gokcumen,et al. Exploring the role of copy number variants in human adaptation. , 2012, Trends in genetics : TIG.
[40] S. O’Brien,et al. Chromosomal localization and racial distribution of the polymorphic human dihydrofolate reductase pseudogene (DHFRP1). , 1988, American journal of human genetics.
[41] Terrence S. Furey,et al. The UCSC Genome Browser Database: update 2006 , 2005, Nucleic Acids Res..
[42] Kenneth H. Wolfe,et al. Turning a hobby into a job: How duplicated genes find new functions , 2008, Nature Reviews Genetics.
[43] Zhaohui S. Qin,et al. Genome-wide detection and characterization of positive selection in human populations , 2007 .
[44] Kristian Stevens,et al. Genome-wide analysis of retrogene polymorphisms in Drosophila melanogaster. , 2011, Genome research.
[45] Matthew W. Hahn,et al. Distinguishing among evolutionary models for the maintenance of gene duplicates. , 2009, The Journal of heredity.
[46] Corbin D. Jones,et al. Parallel evolution of chimeric fusion genes. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[47] M. Long,et al. Natural selection and the origin of jingwei, a chimeric processed functional gene in Drosophila. , 1993, Science.
[48] Richard R. Hudson,et al. Generating samples under a Wright-Fisher neutral model of genetic variation , 2002, Bioinform..
[49] Jennifer R. Moran,et al. Adaptive loss of an old duplicated gene during incipient speciation. , 2006, Molecular biology and evolution.
[50] N. Okada,et al. mRNA retrotransposition coupled with 5' inversion as a possible source of new genes. , 2009, Molecular biology and evolution.
[51] Daniel R. Schrider,et al. Gene copy-number polymorphism in nature , 2010, Proceedings of the Royal Society B: Biological Sciences.
[52] Carsten Bergmann,et al. Mutation of the SBF2 gene, encoding a novel member of the myotubularin family, in Charcot-Marie-Tooth neuropathy type 4B2/11p15. , 2003, Human molecular genetics.
[53] J. Pritchard,et al. A Map of Recent Positive Selection in the Human Genome , 2006, PLoS biology.
[54] Kenta Nakai,et al. Retrotransposition as a Source of New Promoters , 2008, Molecular biology and evolution.
[55] D. Haussler,et al. Retrocopy contributions to the evolution of the human genome , 2008, BMC Genomics.
[56] Kevin R. Thornton,et al. Retroposed new genes out of the X in Drosophila. , 2002, Genome research.
[57] S. L. Wong,et al. Extensive Gene Traffic on the Mammalian X Chromosome , 2022 .
[58] J. Brosius,et al. Retroposons--seeds of evolution. , 1991, Science.
[59] S. Lociuro,et al. Dihydrofolate reductase inhibitors as antibacterial agents. , 2006, Biochemical pharmacology.
[60] E. Nevo,et al. Origin of sphinx, a young chimeric RNA gene in Drosophila melanogaster , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[61] W. J. Kent,et al. BLAT--the BLAST-like alignment tool. , 2002, Genome research.
[62] D. Altshuler,et al. A map of human genome variation from population-scale sequencing , 2010, Nature.
[63] Tomas W. Fitzgerald,et al. Origins and functional impact of copy number variation in the human genome , 2010, Nature.
[64] Pardis C Sabeti,et al. Genome-wide detection and characterization of positive selection in human populations , 2007, Nature.
[65] P. Stankiewicz,et al. Structural variation in the human genome and its role in disease. , 2010, Annual review of medicine.
[66] Beth Israel,et al. Decision letter: Replication Study: A coding-independent function of gene and pseudogene mRNAs regulates tumour biology , 2010 .
[67] Carlos Diaz-Castillo,et al. Nuclear chromosome dynamics in the Drosophila male germ line contribute to the nonrandom genomic distribution of retrogenes. , 2012, Molecular biology and evolution.