Geometric algorithms for the conformational analysis of long protein loops
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Thierry Siméon | Juan Cortés | Magali Remaud-Siméon | Vinh Tran | T. Siméon | Juan Cortés | M. Remaud-Siméon | V. Tran
[1] Jiří Novotný,et al. Structure of antibody hypervariable loops reproduced by a conformational search algorithm , 1988, Nature.
[2] M. Renaud,et al. A SIMPLIFIED INVERSE KINEMATIC MODEL CALCULATION METHOD FOR ALL 6R TYPE MANIPULATORS , 2000 .
[3] Berend Smit,et al. Understanding molecular simulation: from algorithms to applications , 1996 .
[4] Lydia E. Kavraki,et al. A randomized kinematics‐based approach to pharmacophore‐constrained conformational search and database screening , 2000 .
[5] Dinesh Manocha,et al. Efficient inverse kinematics for general 6R manipulators , 1994, IEEE Trans. Robotics Autom..
[6] N. Metropolis,et al. Equation of State Calculations by Fast Computing Machines , 1953, Resonance.
[7] Clément Gosselin,et al. On the Determination of the Workspace of Complex Planar Robotic Manipulators , 1998 .
[8] Hong Y. Lee,et al. A new vector theory for the analysis of spatial mechanisms , 1988 .
[9] H. Kwakernaak,et al. Polynomial J-spectral factorization , 1994, IEEE Trans. Autom. Control..
[10] J. Moult,et al. An algorithm for determining the conformation of polypeptide segments in proteins by systematic search , 1986, Proteins.
[11] N. Go,et al. Ring Closure and Local Conformational Deformations of Chain Molecules , 1970 .
[12] M. Gajhede,et al. Amylosucrase, a Glucan-synthesizing Enzyme from the α-Amylase Family* , 2001, The Journal of Biological Chemistry.
[13] Nancy M. Amato,et al. Ligand binding with OBPRM and user input , 2001, Proceedings 2001 ICRA. IEEE International Conference on Robotics and Automation (Cat. No.01CH37164).
[14] A. Sali,et al. Modeling of loops in protein structures , 2000, Protein science : a publication of the Protein Society.
[15] Francis L. Merat,et al. Introduction to robotics: Mechanics and control , 1987, IEEE J. Robotics Autom..
[16] Sandor Vajda,et al. CAPRI: A Critical Assessment of PRedicted Interactions , 2003, Proteins.
[17] Shirley Dex,et al. JR 旅客販売総合システム(マルス)における運用及び管理について , 1991 .
[18] A. Bogmér,et al. On control problems , 1989 .
[19] Jean-Claude Latombe,et al. Efficient maintenance and self-collision testing for Kinematic Chains , 2002, SCG '02.
[20] Baldomero Oliva,et al. An automated classification of the structure of protein loops. , 1997, Journal of molecular biology.
[21] Madhusudan Raghavan,et al. On the design of manipulators for applying wrenches , 1989, Proceedings, 1989 International Conference on Robotics and Automation.
[22] Harold A. Scheraga,et al. Conformational Analysis of Macromolecules. II. The Rotational Isomeric States of the Normal Hydrocarbons , 1966 .
[23] G. Swaminathan. Robot Motion Planning , 2006 .
[24] Magali Remaud-Simeon,et al. Oligosaccharide and Sucrose Complexes of Amylosucrase , 2002, The Journal of Biological Chemistry.
[25] Jean-Pierre Merlet,et al. Determination of the orientation workspace of parallel manipulators , 1995, J. Intell. Robotic Syst..
[26] Ming Zhang,et al. A New Method for Fast and Accurate Derivation of Molecular Conformations , 2002, J. Chem. Inf. Comput. Sci..
[27] L. Pauling. The Nature Of The Chemical Bond , 1939 .
[28] John J. Craig,et al. Introduction to Robotics Mechanics and Control , 1986 .
[29] G. N. Ramachandran,et al. Conformation of polypeptides and proteins. , 1968, Advances in protein chemistry.
[30] Qiang Zheng,et al. Loop closure via bond scaling and relaxation , 1993, J. Comput. Chem..
[31] C. Tanford. Macromolecules , 1994, Nature.
[32] Adrian A Canutescu,et al. Cyclic coordinate descent: A robotics algorithm for protein loop closure , 2003, Protein science : a publication of the Protein Society.
[33] Antonio Bicchi,et al. Control Problems in Robotics , 2003, Springer Tracts in Advanced Robotics.
[34] Thierry Siméon,et al. Visibility-based probabilistic roadmaps for motion planning , 2000, Adv. Robotics.
[35] H. Scheraga,et al. Exact analytical loop closure in proteins using polynomial equations , 1999 .
[36] F. Young. Biochemistry , 1955, The Indian Medical Gazette.
[37] M. Karplus,et al. PDB-based protein loop prediction: parameters for selection and methods for optimization. , 1997, Journal of molecular biology.
[38] A. Bondi. van der Waals Volumes and Radii , 1964 .
[39] T Schlick,et al. The loop opening/closing motion of the enzyme triosephosphate isomerase. , 1998, Biophysical journal.
[40] Nancy M. Amato,et al. Using Motion Planning to Study Protein Folding Pathways , 2002, J. Comput. Biol..
[41] Leo Joskowicz,et al. Computational Kinematics , 1991, Artif. Intell..
[42] M. Karplus,et al. Prediction of the folding of short polypeptide segments by uniform conformational sampling , 1987, Biopolymers.
[43] Jean-Paul Laumond,et al. Robot Motion Planning and Control , 1998 .
[44] Michael L. Norman,et al. The Formation of the First Star in the Universe , 2001, Science.
[45] C. Levinthal,et al. Predicting antibody hypervariable loop conformation. I. Ensembles of random conformations for ringlike structures , 1987, Biopolymers.
[46] Gordon M. Crippen,et al. Exploring the conformation space of cycloalkanes by linearized embedding , 1992 .
[47] A. Sali,et al. Protein Structure Prediction and Structural Genomics , 2001, Science.
[48] P E Wright,et al. Backbone dynamics in dihydrofolate reductase complexes: role of loop flexibility in the catalytic mechanism. , 2001, Biochemistry.
[49] Lydia E. Kavraki,et al. Probabilistic roadmaps for path planning in high-dimensional configuration spaces , 1996, IEEE Trans. Robotics Autom..
[50] S. A. Stoeter,et al. Proceedings - IEEE International Conference on Robotics and Automation , 2003 .
[51] Robert J. Schilling,et al. Fundamentals of Robotics , 1990 .
[52] Jean-Claude Latombe,et al. Capturing molecular energy landscapes with probabilistic conformational roadmaps , 2001, Proceedings 2001 ICRA. IEEE International Conference on Robotics and Automation (Cat. No.01CH37164).
[53] Carme Torras,et al. Collision detection algorithms for motion planning , 1998 .
[54] Jean-Paul Laumond,et al. Algorithms for Robotic Motion and Manipulation , 1997 .
[55] Jean-Claude Latombe,et al. Stochastic roadmap simulation: an efficient representation and algorithm for analyzing molecular motion , 2002, RECOMB '02.
[56] Carme Torras,et al. On Finding the Set of Inverse Kinematic Solutions for Redundant Manipulators , 1993 .