Enzymes revolutionize the bioproduction of value-added compounds: From enzyme discovery to special applications.

Competitive sustainable production in industry demands new and better biocatalysts, optimized bioprocesses and cost-effective product recovery. Our review sheds light on the progress made for the individual steps towards these goals, starting with the discovery of new enzymes and their corresponding genes. The enzymes are subsequently engineered to improve their performance, combined in reaction cascades to expand the reaction scope and integrated in whole cells to provide an optimal environment for the bioconversion. Strain engineering using synthetic biology methods tunes the host for production, reaction design optimizes the reaction conditions and downstream processing ensures the efficient recovery of commercially viable products. Selected examples illustrate how modified enzymes can revolutionize future-oriented applications ranging from the bioproduction of bulk-, specialty- and fine chemicals, active pharmaceutical ingredients and carbohydrates, over the conversion of the greenhouse-gas CO2 into valuable products and biocontrol in agriculture, to recycling of synthetic polymers and recovery of precious metals.

[1]  Peter G Schultz,et al.  Protein conjugation with genetically encoded unnatural amino acids. , 2013, Current opinion in chemical biology.

[2]  Wolfgang Kroutil,et al.  Regio- and Stereoselective Biocatalytic Monoamination of a Triketone Enables Asymmetric Synthesis of Both Enantiomers of the Pyrrolizidine Alkaloid Xenovenine Employing Transaminases , 2016 .

[3]  Takeshi Honda,et al.  Evidence for high specificity and efficiency of multiple recombination signals in mixed DNA cloning by the Multisite Gateway system. , 2004, Journal of biotechnology.

[4]  Ryan A Mehl,et al.  Improving nature's enzyme active site with genetically encoded unnatural amino acids. , 2006, Journal of the American Chemical Society.

[5]  Ulrich Schwaneberg,et al.  In Vitro Double Oxidation of n-Heptane with Direct Cofactor Regeneration , 2013 .

[6]  Margarida Casal,et al.  Engineered Thermobifida fusca cutinase with increased activity on polyester substrates. , 2011, Biotechnology journal.

[7]  Anton Glieder,et al.  Screening hydroxynitrile lyases for (R)-pantolactone synthesis , 2008 .

[8]  Bernhard Hauer,et al.  Microbial biofilms: a concept for industrial catalysis? , 2009, Trends in biotechnology.

[9]  Alexander F. Auch,et al.  MEGAN analysis of metagenomic data. , 2007, Genome research.

[10]  Antje Spieß,et al.  Optimization of Settling Behavior for an Efficient Solvent-Extraction Process for Biobased Components , 2017 .

[11]  G. Antranikian,et al.  Practical application of different enzymes immobilized on sepabeads , 2008, Bioprocess and biosystems engineering.

[12]  Carlos G. Acevedo-Rocha,et al.  biological tool for lipase-catalysed reactions in hostile environments† , 2013 .

[13]  Alessandro Pellis,et al.  Small cause, large effect: Structural characterization of cutinases from Thermobifida cellulosilytica , 2017, Biotechnology and bioengineering.

[14]  Colin Robinson,et al.  Biotechnological exploitation of microalgae. , 2015, Journal of experimental botany.

[15]  Oliver May,et al.  Application of designed enzymes in organic synthesis. , 2011, Chemical reviews.

[16]  L. Blank,et al.  Metabolic response of Pseudomonas putida during redox biocatalysis in the presence of a second octanol phase , 2008, The FEBS journal.

[17]  Hubertus V. M. Hamelers,et al.  Microbial electrolysis cells for production of methane from CO2: long‐term performance and perspectives , 2012 .

[18]  Alessandro Pellis,et al.  Improving enzymatic polyurethane hydrolysis by tuning enzyme sorption , 2016 .

[19]  Angela Zhang,et al.  Carbon recycling by cyanobacteria: improving CO2 fixation through chemical production , 2017, FEMS microbiology letters.

[20]  Jung-Min Choi,et al.  Industrial applications of enzyme biocatalysis: Current status and future aspects. , 2015, Biotechnology advances.

[21]  Roger A Sheldon,et al.  Fundamentals of green chemistry: efficiency in reaction design. , 2012, Chemical Society reviews.

[22]  John H. Grate,et al.  A green-by-design biocatalytic process for atorvastatin intermediate , 2010 .

[23]  Cameron Johnson,et al.  Natural rice rhizospheric microbes suppress rice blast infections , 2014, BMC Plant Biology.

[24]  Meiying Xu,et al.  Bacterial extracellular electron transfer in bioelectrochemical systems , 2012 .

[25]  Joonas Sorvari,et al.  Ice growth on the cooling surface in a jacketed and stirred eutectic freeze crystallizer of aqueous Na2SO4 solutions , 2017 .

[26]  Anyi Hu,et al.  CO2 sequestration by methanogens in activated sludge for methane production , 2015 .

[27]  P. Garbeva,et al.  Volatile-mediated interactions between phylogenetically different soil bacteria , 2014, Front. Microbiol..

[28]  Sylvia Gildemyn,et al.  A critical revisit of the key parameters used to describe microbial electrochemical systems , 2014 .

[29]  A. Schmid,et al.  Efficient production of the Nylon 12 monomer ω-aminododecanoic acid methyl ester from renewable dodecanoic acid methyl ester with engineered Escherichia coli. , 2016, Metabolic engineering.

[30]  Polona Žnidaršič-Plazl,et al.  Development of microreactors with surface-immobilized biocatalysts for continuous transamination. , 2018, New biotechnology.

[31]  R. Stepanauskas Single cell genomics: an individual look at microbes. , 2012, Current opinion in microbiology.

[32]  Volker F. Wendisch,et al.  Updates on industrial production of amino acids using Corynebacterium glutamicum , 2016, World Journal of Microbiology and Biotechnology.

[33]  Oliver May,et al.  Development of Dynamic Kinetic Resolution Processes for Biocatalytic Production of Natural and Nonnatural l-Amino Acids , 2002 .

[34]  Donald Hilvert,et al.  De novo enzymes by computational design. , 2013, Current opinion in chemical biology.

[35]  Chaitan Khosla,et al.  Structure and mechanism of assembly line polyketide synthases. , 2016, Current opinion in structural biology.

[36]  Bernd Nidetzky,et al.  Identification of Candida tenuis xylose reductase as highly selective biocatalyst for the synthesis of aromatic alpha-hydroxy esters and improvement of its efficiency by protein engineering. , 2007, Chemical communications.

[37]  John M. Woodley,et al.  Integrating protein engineering with process design for biocatalysis , 2018, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences.

[38]  Luke N. Latimer,et al.  Iterative optimization of xylose catabolism in Saccharomyces cerevisiae using combinatorial expression tuning , 2017, Biotechnology and bioengineering.

[39]  Rodney Rothstein,et al.  Mechanisms and Regulation of Mitotic Recombination in Saccharomyces cerevisiae , 2014, Genetics.

[40]  Corban G. Rivera,et al.  Combinatorial metabolic pathway assembly in the yeast genome with RNA-guided Cas9 , 2016, Journal of Industrial Microbiology & Biotechnology.

[41]  Korneel Rabaey,et al.  Operational and technical considerations for microbial electrosynthesis. , 2012, Biochemical Society transactions.

[42]  Jay D Keasling,et al.  Balancing a heterologous mevalonate pathway for improved isoprenoid production in Escherichia coli. , 2007, Metabolic engineering.

[43]  Martin Kupiec,et al.  New insights into the mechanism of homologous recombination in yeast. , 2004, Mutation research.

[44]  Nicholas J Turner,et al.  Enzyme catalysed deracemisation and dynamic kinetic resolution reactions. , 2004, Current opinion in chemical biology.

[45]  Bernd Mueller-Roeber,et al.  Synthetic Promoters and Transcription Factors for Heterologous Protein Expression in Saccharomyces cerevisiae , 2017, Front. Bioeng. Biotechnol..

[46]  Daniel Schindler,et al.  Design and Assembly of DNA Sequence Libraries for Chromosomal Insertion in Bacteria Based on a Set of Modified MoClo Vectors. , 2016, ACS synthetic biology.

[47]  John C Whitman,et al.  Improving catalytic function by ProSAR-driven enzyme evolution , 2007, Nature Biotechnology.

[48]  Andreas Jupke,et al.  Four Atom Efficient Enzyme Cascades for All 4-Methoxyphenyl-1,2-propanediol Isomers Including Product Crystallization Targeting High Product Concentrations and Excellent E-Factors , 2018, ACS Sustainable Chemistry & Engineering.

[49]  J. Doudna,et al.  A Programmable Dual-RNA–Guided DNA Endonuclease in Adaptive Bacterial Immunity , 2012, Science.

[50]  John M. Woodley,et al.  Rules for biocatalyst and reaction engineering to implement effective, NAD(P)H-dependent, whole cell bioreductions , 2015, Biotechnology advances.

[51]  Weston R. Whitaker,et al.  Metabolic pathway flux enhancement by synthetic protein scaffolding. , 2011, Methods in enzymology.

[52]  Kin Sing Lam Application of Whole‐Cell Biotransformation in the Pharmaceutical Industry , 2009 .

[53]  E. Birney,et al.  Velvet: algorithms for de novo short read assembly using de Bruijn graphs. , 2008, Genome research.

[54]  Jun Ogawa,et al.  Development of biocatalytic processes in Japan and Germany: from research synergies to industrial applications. , 2012, Chemistry, an Asian journal.

[55]  Frank Hollmann,et al.  Biocatalytic Oxidation Reactions: A Chemist's Perspective , 2018, Angewandte Chemie.

[56]  B. Seiboth,et al.  The Promoter Toolbox for Recombinant Gene Expression in Trichoderma reesei , 2018, Front. Bioeng. Biotechnol..

[57]  Anne Galarneau,et al.  Catalytic, mild, and selective oxyfunctionalization of linear alkanes: current challenges. , 2012, Angewandte Chemie.

[58]  Anton Glieder,et al.  Production of Hydroxynitrile Lyase from Davallia tyermannii (DtHNL) in Komagataella phaffii and Its Immobilization as a CLEA to Generate a Robust Biocatalyst , 2018, Chembiochem : a European journal of chemical biology.

[59]  Roger A. Sheldon,et al.  Biocatalysis in ionic liquids. , 2002, Chemical reviews.

[60]  Natalia Dudareva,et al.  Biosynthesis, function and metabolic engineering of plant volatile organic compounds. , 2013, The New phytologist.

[61]  Tom Ellis,et al.  Biosynthesis of therapeutic natural products using synthetic biology. , 2016, Advanced drug delivery reviews.

[62]  J. Keasling,et al.  Engineering a mevalonate pathway in Escherichia coli for production of terpenoids , 2003, Nature Biotechnology.

[63]  Shuke Wu,et al.  Whole‐Cell Cascade Biotransformations for One‐Pot Multistep Organic Synthesis , 2018 .

[64]  Gabriella Fiorentino,et al.  Thermus thermophilus as source of thermozymes for biotechnological applications: homologous expression and biochemical characterization of an α-galactosidase , 2017, Microbial Cell Factories.

[65]  Martin Hemberg Single-cell genomics , 2018, Briefings in functional genomics.

[66]  Lisa Rosgaard,et al.  Bioengineering of carbon fixation, biofuels, and biochemicals in cyanobacteria and plants. , 2012, Journal of biotechnology.

[67]  Axel Mithöfer,et al.  Insects feeding on plants: rapid signals and responses preceding the induction of phytochemical release. , 2007, Phytochemistry.

[68]  Alessandra Basso,et al.  In Silico Analysis of Enzyme Surface and Glycosylation Effect as a Tool for Efficient Covalent Immobilisation of CalB and PGA on Sepabeads , 2007 .

[69]  Karin Schroën,et al.  Fermentation broth components influence droplet coalescence and hinder advanced biofuel recovery during fermentation. , 2015, Biotechnology journal.

[70]  Andrej Sali,et al.  A Systematic Computational Analysis of Biosynthetic Gene Cluster Evolution: Lessons for Engineering Biosynthesis , 2014, PLoS Comput. Biol..

[71]  Bradley Charles Bundy,et al.  Enhanced enzyme stability through site-directed covalent immobilization. , 2015, Journal of biotechnology.

[72]  David Haussler,et al.  The UCSC Genome Browser database: 2018 update , 2017, Nucleic Acids Res..

[73]  J. Hahn,et al.  Redirection of pyruvate flux toward desired metabolic pathways through substrate channeling between pyruvate kinase and pyruvate-converting enzymes in Saccharomyces cerevisiae , 2016, Scientific Reports.

[74]  Hong Hocheng,et al.  Enzymatic bioleaching of metals from printed circuit board , 2015, Clean Technologies and Environmental Policy.

[75]  Luke N. Latimer,et al.  Employing a combinatorial expression approach to characterize xylose utilization in Saccharomyces cerevisiae. , 2014, Metabolic engineering.

[76]  N. Bruce,et al.  A Gene‐Fusion Approach to Enabling Plant Cytochromes P450 for Biocatalysis , 2012, Chembiochem : a European journal of chemical biology.

[77]  Bernhard Hauer,et al.  Squalene hopene cyclases are protonases for stereoselective Brønsted acid catalysis. , 2015, Nature chemical biology.

[78]  Jian Chen,et al.  Cofactor Engineering Enhances the Physiological Function of an Industrial Strain , 2011 .

[79]  S A Krawetz Sequence errors described in GenBank: a means to determine the accuracy of DNA sequence interpretation. , 1989, Nucleic acids research.

[80]  Miguel Arroyo,et al.  Thermal stabilization of immobilized lipase B from Candida antarctica on different supports: Effect of water activity on enzymatic activity in organic media , 1999 .

[81]  Wolfgang Zimmermann,et al.  Enzymatic hydrolysis of polyethylene terephthalate films in an ultrafiltration membrane reactor , 2015 .

[82]  T. Graupner,et al.  Recovery of Nickel and Cobalt from Laterite Tailings by Reductive Dissolution under Aerobic Conditions Using Acidithiobacillus Species. , 2015, Environmental science & technology.

[83]  Niels Bjørn Hansen,et al.  Advancing USER cloning into simpleUSER and nicking cloning. , 2014, Journal of microbiological methods.

[84]  Heng-Phon Too,et al.  Highly regio- and enantioselective multiple oxy- and amino-functionalizations of alkenes by modular cascade biocatalysis , 2016, Nature Communications.

[85]  U. Bornscheuer,et al.  Biotransformation of Linoleic Acid into Hydroxy Fatty Acids and Carboxylic Acids Using a Linoleate Double Bond Hydratase as Key Enzyme , 2015 .

[86]  Nediljko Budisa,et al.  Biocatalysis with Unnatural Amino Acids: Enzymology Meets Xenobiology. , 2017, Angewandte Chemie.

[87]  Bernhard Hauer,et al.  Optically Active Amines via Lipase-Catalyzed Methoxyacetylation. , 1997 .

[88]  Ulrich Schwaneberg,et al.  Whole-cell double oxidation of n-heptane. , 2014, Journal of biotechnology.

[89]  A. Krivoruchko,et al.  Microbial acetyl-CoA metabolism and metabolic engineering. , 2015, Metabolic engineering.

[90]  Peter Man-Un Ung,et al.  Automated genome mining for natural products , 2009, BMC Bioinformatics.

[91]  Thomas R Ward,et al.  Artificial Metalloenzymes on the Verge of New-to-Nature Metabolism. , 2018, Trends in biotechnology.

[92]  G J Davies,et al.  Glycosyltransferases: structures, functions, and mechanisms. , 2008, Annual review of biochemistry.

[93]  S. Atsumi,et al.  Cyanobacterial biofuel production. , 2012, Journal of biotechnology.

[94]  Mario Juhas,et al.  High molecular weight DNA assembly in vivo for synthetic biology applications. , 2017, Critical reviews in biotechnology.

[95]  C. L. Brierley,et al.  How will biomining be applied in future , 2008 .

[96]  Laichuang Han,et al.  Exploitation of Bacillus subtilis as a robust workhorse for production of heterologous proteins and beyond , 2018, World Journal of Microbiology and Biotechnology.

[97]  Shuliang Gao,et al.  One-step integration of multiple genes into the oleaginous yeast Yarrowia lipolytica , 2014, Biotechnology Letters.

[98]  Pan Hu,et al.  Construction and Activity Analyses of Single Functional Mouse Peroxiredoxin 6 (Prdx6) , 2019, Journal of veterinary research.

[99]  Bruce E Logan,et al.  Direct biological conversion of electrical current into methane by electromethanogenesis. , 2009, Environmental science & technology.

[100]  J. D. de Winde,et al.  Crude glycerol as feedstock for the sustainable production of p-hydroxybenzoate by Pseudomonas putida S12. , 2014, New biotechnology.

[101]  Ralf Tilcher,et al.  Next-Generation Bio-Products Sowing the Seeds of Success for Sustainable Agriculture , 2013 .

[102]  Maria C Cuellar,et al.  Integration of Gas Enhanced Oil Recovery in Multiphase Fermentations for the Microbial Production of Fuels and Chemicals. , 2018, Biotechnology journal.

[103]  A. Kiener,et al.  Industrial biocatalysis today and tomorrow , 2001, Nature.

[104]  Paul S Freemont,et al.  EcoFlex: A Multifunctional MoClo Kit for E. coli Synthetic Biology. , 2016, ACS synthetic biology.

[105]  Peter G. Schultz,et al.  Biosynthesis of a site-specific DNA cleaving protein. , 2008, Journal of the American Chemical Society.

[106]  Bernd Nidetzky,et al.  Enzymatic Redox Cascade for One-Pot Synthesis of Uridine 5′-Diphosphate Xylose from Uridine 5′-Diphosphate Glucose , 2014, Advanced synthesis & catalysis.

[107]  Moritz Pott,et al.  A Noncanonical Proximal Heme Ligand Affords an Efficient Peroxidase in a Globin Fold. , 2018, Journal of the American Chemical Society.

[108]  Ramesh N. Patel,et al.  Biocatalysis for synthesis of pharmaceuticals. , 2017, Bioorganic & medicinal chemistry.

[109]  K. Gernaey,et al.  Screening of organic solvents for bioprocesses using aqueous-organic two-phase systems. , 2018, Biotechnology advances.

[110]  Andreas Schmid,et al.  Engineering of Pseudomonas taiwanensis VLB120 for Constitutive Solvent Tolerance and Increased Specific Styrene Epoxidation Activity , 2014, Applied and Environmental Microbiology.

[111]  Harald Pichler,et al.  Yeast metabolic engineering--targeting sterol metabolism and terpenoid formation. , 2013, Progress in lipid research.

[112]  Rajesh Kumar,et al.  Extending the application of biocatalysis to meet the challenges of drug development , 2018, Nature Reviews Chemistry.

[113]  Irini Angelidaki,et al.  Microbial electrolysis cells turning to be versatile technology: recent advances and future challenges. , 2014, Water research.

[114]  Martin Grube,et al.  A novel assay for the detection of bioactive volatiles evaluated by screening of lichen-associated bacteria , 2015, Front. Microbiol..

[115]  V. Siewers,et al.  A systems-level approach for metabolic engineering of yeast cell factories. , 2012, FEMS yeast research.

[116]  Martin Hesseler,et al.  Protein Engineering of α/β‐Hydrolase Fold Enzymes , 2011, Chembiochem : a European journal of chemical biology.

[117]  Lutz Hilterhaus,et al.  Reactor Concept for Lipase-Catalyzed Solvent-Free Conversion of Highly Viscous Reactants Forming Two-Phase Systems , 2008 .

[118]  Anne Pohlmann,et al.  Genome sequence of the bioplastic-producing “Knallgas” bacterium Ralstonia eutropha H16 , 2006, Nature Biotechnology.

[119]  Long Liu,et al.  Toward metabolic engineering in the context of system biology and synthetic biology: advances and prospects , 2015, Applied Microbiology and Biotechnology.

[120]  R. Gross,et al.  Immobilized cutinases: Preparation, solvent tolerance and thermal stability. , 2018, Enzyme and microbial technology.

[121]  S. Lee,et al.  Systems strategies for developing industrial microbial strains , 2015, Nature Biotechnology.

[122]  Jingdong Tian,et al.  Circular Polymerase Extension Cloning of Complex Gene Libraries and Pathways , 2009, PloS one.

[123]  Andreas Schirmer,et al.  Terminal Olefin (1-Alkene) Biosynthesis by a Novel P450 Fatty Acid Decarboxylase from Jeotgalicoccus Species , 2011, Applied and Environmental Microbiology.

[124]  Anton Glieder,et al.  Expression of recombinant human flavin monooxygenase and moclobemide-N-oxide synthesis on multi-mg scale. , 2012, Chemical communications.

[125]  Bin Zhou,et al.  Synthesis and assembly of a full‐length human monoclonal antibody in algal chloroplasts , 2009, Biotechnology and bioengineering.

[126]  Elisabetta Brenna,et al.  Cascade Coupling of Ene Reductases with Alcohol Dehydrogenases: Enantioselective Reduction of Prochiral Unsaturated Aldehydes , 2012 .

[127]  Huimin Zhao,et al.  Regeneration of Cofactors for Enzyme Biocatalysis , 2004 .

[128]  Frank Hollmann,et al.  Selective aerobic oxidation reactions using a combination of photocatalytic water oxidation and enzymatic oxyfunctionalisations , 2017, Nature Catalysis.

[129]  Xavier Garrabou,et al.  Sequential Biocatalytic Aldol Reactions in Multistep Asymmetric Synthesis: Pipecolic Acid, Piperidine and Pyrrolidine (Homo)Iminocyclitol Derivatives from Achiral Building Blocks , 2014 .

[130]  Andreas Schmid,et al.  Process boundaries of irreversible scCO2‐assisted phase separation in biphasic whole‐cell biocatalysis , 2015, Biotechnology and bioengineering.

[131]  Ulrich Klar,et al.  Biocatalysis at Work: Applications in the Development of Sagopilone , 2015, ChemMedChem.

[132]  Takuya Miyakawa,et al.  A novel Ca2+-activated, thermostabilized polyesterase capable of hydrolyzing polyethylene terephthalate from Saccharomonospora viridis AHK190 , 2014, Applied Microbiology and Biotechnology.

[133]  C. Denard,et al.  Multistep One-Pot Reactions Combining Biocatalysts and Chemical Catalysts for Asymmetric Synthesis , 2013 .

[134]  M. Kozak Initiation of translation in prokaryotes and eukaryotes. , 1999, Gene.

[135]  P. Derkx,et al.  The art of strain improvement of industrial lactic acid bacteria without the use of recombinant DNA technology , 2014, Microbial Cell Factories.

[136]  Birgit Piechulla,et al.  Bacterial volatiles and their action potential , 2009, Applied Microbiology and Biotechnology.

[137]  Claudia E Vickers,et al.  Recent advances in synthetic biology for engineering isoprenoid production in yeast. , 2017, Current opinion in chemical biology.

[138]  Miriam A Rosenbaum,et al.  Engineering microbial electrocatalysis for chemical and fuel production. , 2014, Current opinion in biotechnology.

[139]  Jan Marienhagen,et al.  Combinatorial optimization of synthetic operons for the microbial production of p-coumaryl alcohol with Escherichia coli , 2015, Microbial Cell Factories.

[140]  Marnix H. Medema,et al.  Computational Genomics of Specialized Metabolism: from Natural Product Discovery to Microbiome Ecology , 2018, mSystems.

[141]  Yizhi Cai,et al.  Yeast Golden Gate (yGG) for the Efficient Assembly of S. cerevisiae Transcription Units. , 2015, ACS synthetic biology.

[142]  Alessandro Pellis,et al.  Enlarging the tools for efficient enzymatic polycondensation: structural and catalytic features of cutinase 1 from Thermobifida cellulosilytica , 2016 .

[143]  Jochen Wachtmeister,et al.  Recent advances in whole cell biocatalysis techniques bridging from investigative to industrial scale. , 2016, Current opinion in biotechnology.

[144]  Guocheng Du,et al.  Developing Bacillus spp. as a cell factory for production of microbial enzymes and industrially important biochemicals in the context of systems and synthetic biology , 2013, Applied Microbiology and Biotechnology.

[145]  Pablo Carbonell,et al.  Retropath: automated pipeline for embedded metabolic circuits. , 2014, ACS synthetic biology.

[146]  Ryan T Gill,et al.  Rapid and Efficient One-Step Metabolic Pathway Integration in E. coli. , 2016, ACS synthetic biology.

[147]  Nicholas J Turner,et al.  Synthesis of d- and l-Phenylalanine Derivatives by Phenylalanine Ammonia Lyases: A Multienzymatic Cascade Process** , 2015, Angewandte Chemie.

[148]  Anna M Planas,et al.  A plasmid toolkit for cloning chimeric cDNAs encoding customized fusion proteins into any Gateway destination expression vector , 2013, BMC Molecular Biology.

[149]  Karen Robins,et al.  Whole‐Cell Carboxylate Reduction for the Synthesis of 3‐Hydroxytyrosol , 2014 .

[150]  Vlada B Urlacher,et al.  Cytochrome P450 monooxygenases: an update on perspectives for synthetic application. , 2012, Trends in biotechnology.

[151]  V. Wendisch,et al.  The flexible feedstock concept in Industrial Biotechnology: Metabolic engineering of Escherichia coli, Corynebacterium glutamicum, Pseudomonas, Bacillus and yeast strains for access to alternative carbon sources. , 2016, Journal of biotechnology.

[152]  A. Doğan,et al.  Improvements of Tolerance to Stress Conditions by Genetic Engineering in Saccharomyces Cerevisiae during Ethanol Production , 2014, Applied Biochemistry and Biotechnology.

[153]  Lothar Brecker,et al.  Candida tenuis xylose reductase catalysed reduction of acetophenones: the effect of ring-substituents on catalytic efficiency. , 2011, Organic & biomolecular chemistry.

[154]  Rosiane Lopes da Cunha,et al.  The role of Saccharomyces cerevisiae in stabilizing emulsions of hexadecane in aqueous media , 2017, Applied Microbiology and Biotechnology.

[155]  Aditya M. Kunjapur,et al.  Synthesis and accumulation of aromatic aldehydes in an engineered strain of Escherichia coli. , 2014, Journal of the American Chemical Society.

[156]  R. Kiene,et al.  Dimethyl Sulfide Production from Dimethylsulfoniopropionate in Coastal Seawater Samples and Bacterial Cultures , 1990, Applied and environmental microbiology.

[157]  Heinrich Sticht,et al.  Synthetic Protein Scaffolds Based on Peptide Motifs and Cognate Adaptor Domains for Improving Metabolic Productivity , 2015, Front. Bioeng. Biotechnol..

[158]  Frank Hollmann,et al.  A biocatalytic redox isomerisation. , 2012, Chemical communications.

[159]  Tim Angus,et al.  Edinburgh Research Explorer A Graphical and Computational Modelling Platform for Biological Pathways , 2017 .

[160]  Pawel Jajesniak,et al.  Carbon Dioxide Capture and Utilization using Biological Systems: Opportunities and Challenges , 2014 .

[161]  J. Ramos,et al.  Mechanisms of solvent resistance mediated by interplay of cellular factors in Pseudomonas putida. , 2015, FEMS microbiology reviews.

[162]  Wolfgang Kroutil,et al.  Biocatalytic One-Pot Synthesis of l-Tyrosine Derivatives from Monosubstituted Benzenes, Pyruvate, and Ammonia , 2015 .

[163]  Nikil Kapur,et al.  Highly Productive Oxidative Biocatalysis in Continuous Flow by Enhancing the Aqueous Equilibrium Solubility of Oxygen. , 2018, Angewandte Chemie.

[164]  Florian Hollfelder,et al.  Enzyme engineering in biomimetic compartments. , 2015, Current opinion in structural biology.

[165]  Hasnain Hussain,et al.  Combined Overlap Extension PCR Method for Improved Site Directed Mutagenesis , 2016, BioMed research international.

[166]  Christopher A. Voigt,et al.  Genetic circuit design automation , 2016, Science.

[167]  John M Woodley,et al.  The search for the ideal biocatalyst , 2002, Nature Biotechnology.

[168]  Abdeltif Amrane,et al.  Ionic liquids: applications and future trends in bioreactor technology. , 2010, Bioresource technology.

[169]  John R Yates,et al.  Carcinoma and stromal enzyme activity profiles associated with breast tumor growth in vivo. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[170]  Kerstin Steiner,et al.  Hydroxynitrile Lyases for Biocatalytic Synthesis of Chiral Cyanohydrins , 2016 .

[171]  S. Ho,et al.  Engineering hybrid genes without the use of restriction enzymes: gene splicing by overlap extension. , 1989, Gene.

[172]  Korbinian Strimmer,et al.  APE: Analyses of Phylogenetics and Evolution in R language , 2004, Bioinform..

[173]  Anton Glieder,et al.  7.16 C–X Bond Formation: Hydroxynitrile Lyases: From Nature to Application , 2012 .

[174]  D. G. Gibson,et al.  Cloning whole bacterial genomes in yeast , 2010, Nucleic acids research.

[175]  Wilfried Rähse,et al.  Production of Tailor‐Made Enzymes for Detergents , 2014 .

[176]  Huimin Zhao,et al.  Pathway Design, Engineering, and Optimization. , 2016, Advances in biochemical engineering/biotechnology.

[177]  Peng Liang,et al.  Carbon dioxide and organic waste valorization by microbial electrosynthesis and electro-fermentation. , 2019, Water research.

[178]  R. Gross,et al.  Humicola insolens cutinase-catalyzed lactone ring-opening polymerizations: kinetic and mechanistic studies. , 2008, Biomacromolecules.

[179]  Edgard Gnansounou,et al.  Carbon dioxide capture, storage and production of biofuel and biomaterials by bacteria: A review. , 2018, Bioresource technology.

[180]  Guocheng Du,et al.  Construction and Characterization of Broad-Spectrum Promoters for Synthetic Biology. , 2017, ACS synthetic biology.

[181]  Shuke Wu,et al.  Cascade Biocatalysis for Sustainable Asymmetric Synthesis: From Biobased l-Phenylalanine to High-Value Chiral Chemicals. , 2016, Angewandte Chemie.

[182]  L. Olsson,et al.  Increasing NADH oxidation reduces overflow metabolism in Saccharomyces cerevisiae , 2007, Proceedings of the National Academy of Sciences.

[183]  Martina Geier,et al.  Compact multi-enzyme pathways in P. pastoris. , 2015, Chemical communications.

[184]  Ping Wang,et al.  Cofactor regeneration for sustainable enzymatic biosynthesis. , 2007, Biotechnology advances.

[185]  Bernd Nidetzky,et al.  Bioprocess design guided by in situ substrate supply and product removal: Process intensification for synthesis of (S)-1-(2-chlorophenyl)ethanol , 2012, Bioresource technology.

[186]  Lisbeth Olsson,et al.  Changes in lipid metabolism convey acid tolerance in Saccharomyces cerevisiae , 2018, Biotechnology for Biofuels.

[187]  Dirk Weuster-Botz,et al.  Recycling of the ionic liquid phase in process integrated biphasic whole-cell biocatalysis , 2011 .

[188]  Raúl Muñoz,et al.  Biotechnologies for greenhouse gases (CH4, N2O, and CO2) abatement: state of the art and challenges , 2013, Applied Microbiology and Biotechnology.

[189]  Jay D Keasling,et al.  Combinatorial expression of bacterial whole mevalonate pathway for the production of beta-carotene in E. coli. , 2009, Journal of biotechnology.

[190]  Anne S. Meyer,et al.  A general overview of support materials for enzyme immobilization: Characteristics, properties, practical utility , 2018 .

[191]  Beat Wirz,et al.  Human xanthine oxidase recombinant in E. coli: A whole cell catalyst for preparative drug metabolite synthesis. , 2016, Journal of biotechnology.

[192]  Pedro Fernandes,et al.  Flow Bioreactors as Complementary Tools for Biocatalytic Process Intensification. , 2018, Trends in biotechnology.

[193]  Frances H Arnold,et al.  Expanding the enzyme universe: accessing non-natural reactions by mechanism-guided directed evolution. , 2015, Angewandte Chemie.

[194]  J. Handelsman Metagenomics: Application of Genomics to Uncultured Microorganisms , 2004, Microbiology and Molecular Biology Reviews.

[195]  Gerhard G Thallinger,et al.  A Toolbox of Diverse Promoters Related to Methanol Utilization: Functionally Verified Parts for Heterologous Pathway Expression in Pichia pastoris. , 2016, ACS synthetic biology.

[196]  Florian Rudroff,et al.  In vitro characterization of an enzymatic redox cascade composed of an alcohol dehydrogenase, an enoate reductases and a Baeyer–Villiger monooxygenase , 2014, Journal of biotechnology.

[197]  Pan Liao,et al.  The potential of the mevalonate pathway for enhanced isoprenoid production. , 2016, Biotechnology advances.

[198]  Siegfried Förster,et al.  Substrate Specificity of Mutants of the Hydroxynitrile Lyase from Manihot esculenta , 2003, Chembiochem : a European journal of chemical biology.

[199]  C. Ó’Fágáin,et al.  Gel-Filtration Chromatography , 2010, Methods in molecular biology.

[200]  N. Scrutton,et al.  Conversion of alcohols to enantiopure amines through dual-enzyme hydrogen-borrowing cascades , 2015, Science.

[201]  Luciano Galdieri,et al.  Protein Acetylation and Acetyl Coenzyme A Metabolism in Budding Yeast , 2014, Eukaryotic Cell.

[202]  Ryan A McClure,et al.  Discovery of the Tyrobetaine Natural Products and Their Biosynthetic Gene Cluster via Metabologenomics. , 2018, ACS chemical biology.

[203]  Stephan Ladisch,et al.  Construction of long DNA molecules using long PCR-based fusion of several fragments simultaneously. , 2004, Nucleic acids research.

[204]  Daniel C. Ducat,et al.  Improving carbon fixation pathways. , 2012, Current Opinion in Chemical Biology.

[205]  Andrew F Gardner,et al.  Archaeal DNA replication and repair: new genetic, biophysical and molecular tools for discovering and characterizing enzymes, pathways and mechanisms. , 2018, FEMS microbiology reviews.

[206]  Wouter Van Hecke,et al.  Advances in in-situ product recovery (ISPR) in whole cell biotechnology during the last decade. , 2014, Biotechnology advances.

[207]  D. Pant,et al.  A review of the substrates used in microbial fuel cells (MFCs) for sustainable energy production. , 2010, Bioresource technology.

[208]  Vinayagamurthy Balamurugan,et al.  An overview of heterologous expression host systems for the production of recombinant proteins , 2016 .

[209]  Frank Hollmann,et al.  Enzyme-mediated oxidations for the chemist , 2011 .

[210]  Christoph Wilhelm Sensen,et al.  Phoenix 2: a locally installable large-scale 16S rRNA gene sequence analysis pipeline with Web interface. , 2013, Journal of biotechnology.

[211]  John M. Woodley,et al.  Introducing an in situ capping strategy in systems biocatalysis to access 6-aminohexanoic acid. , 2014 .

[212]  Uwe T. Bornscheuer,et al.  A multi-enzyme cascade reaction for the production of 6-hydroxyhexanoic acid , 2019, Zeitschrift fur Naturforschung. C, Journal of biosciences.

[213]  Rudi Fasan,et al.  Enhancing the Efficiency and Regioselectivity of P450 Oxidation Catalysts by Unnatural Amino Acid Mutagenesis , 2014, Chembiochem : a European journal of chemical biology.

[214]  M. De Mey,et al.  Metabolic engineering of Escherichia coli into a versatile glycosylation platform: production of bio-active quercetin glycosides , 2015, Microbial Cell Factories.

[215]  P. Yuan,et al.  Optimization of Protein Expression in Mammalian Cells , 2018, Current protocols in protein science.

[216]  K. Nielsen,et al.  Protein expression-yeast. , 2014, Methods in enzymology.

[217]  Oliver May,et al.  Enantioselective reduction of ketones with "designer cells" at high substrate concentrations: highly efficient access to functionalized optically active alcohols. , 2006, Angewandte Chemie.

[218]  Alistair Elfick,et al.  PaperClip: rapid multi-part DNA assembly from existing libraries , 2014, Nucleic acids research.

[219]  R. Norman,et al.  Electrosynthesis of Commodity Chemicals by an Autotrophic Microbial Community , 2012, Applied and Environmental Microbiology.

[220]  G. Tucker,et al.  Enzymes in food processing , 1995 .

[221]  Zengyi Shao,et al.  DNA assembler, an in vivo genetic method for rapid construction of biochemical pathways , 2008, Nucleic acids research.

[222]  Guoping Zhao,et al.  Tandem assembly of the epothilone biosynthetic gene cluster by in vitro site-specific recombination , 2011, Scientific reports.

[223]  R. Berka,et al.  From the Lab to the Farm: An Industrial Perspective of Plant Beneficial Microorganisms , 2016, Front. Plant Sci..

[224]  Guocheng Du,et al.  How to achieve high-level expression of microbial enzymes , 2013, Bioengineered.

[225]  Harald Gröger,et al.  Enantioselective Rearrangement Coupled with Water Addition: Direct Synthesis of Enantiomerically Pure Saturated Carboxylic Acids from α,β‐Unsaturated Aldehydes , 2014 .

[226]  Julie B. Zimmerman,et al.  The Green ChemisTREE: 20 years after taking root with the 12 principles , 2018 .

[227]  J M Liesch,et al.  Biosynthesis of fluorothreonine and fluoroacetic acid by the thienamycin producer, Streptomyces cattleya. , 1986, The Journal of antibiotics.

[228]  Georg Steinkellner,et al.  Regioselective ortho-carboxylation of phenols catalyzed by benzoic acid decarboxylases: a biocatalytic equivalent to the Kolbe–Schmitt reaction , 2014 .

[229]  G. Stephanopoulos,et al.  Distributing a metabolic pathway among a microbial consortium enhances production of natural products , 2015, Nature Biotechnology.

[230]  Kurt Faber,et al.  Multienzyme One-Pot Cascade for the Stereoselective Hydroxyethyl Functionalization of Substituted Phenols , 2018, Organic letters.

[231]  Bernd Nidetzky,et al.  Downstream Processing of Nucleoside‐Diphospho‐Sugars from Sucrose Synthase Reaction Mixtures at Decreased Solvent Consumption , 2016 .

[232]  Andreas Schmid,et al.  Whole-cell biocatalysis for selective and productive C-O functional group introduction and modification. , 2013, Chemical Society reviews.

[233]  Vera Meyer,et al.  Polycistronic gene expression in Aspergillus niger , 2017, Microbial Cell Factories.

[234]  Wolfgang Kroutil,et al.  Regioselective Biocatalytic Hydroxylation of Fatty Acids by Cytochrome P450s , 2018, Catalysis Letters.

[235]  Kurt Faber,et al.  Amination of ω-Functionalized Aliphatic Primary Alcohols by a Biocatalytic Oxidation–Transamination Cascade , 2015, ChemCatChem.

[236]  Apostolos Alissandratos,et al.  Biocatalysis for the application of CO2 as a chemical feedstock , 2015, Beilstein journal of organic chemistry.

[237]  Donald Hilvert,et al.  A Chemically Programmed Proximal Ligand Enhances the Catalytic Properties of a Heme Enzyme. , 2016, Journal of the American Chemical Society.

[238]  Nobutada Kimura,et al.  Chapter 14 – Novel Biological Resources Screened From Uncultured Bacteria by a Metagenomic Method , 2018 .

[239]  Qingjie Sun,et al.  Fractionation of debranched starch with different molecular weights via edible alcohol precipitation , 2018, Food Hydrocolloids.

[240]  Huimin Zhao,et al.  Customized optimization of metabolic pathways by combinatorial transcriptional engineering , 2012, Nucleic acids research.

[241]  R. E. Huber,et al.  m-Fluorotyrosine substitution in beta-galactosidase; evidence for the existence of a catalytically active tyrosine. , 1985, Biochemical and biophysical research communications.

[242]  Gibson S. Nyanhongo,et al.  Two-step enzymatic functionalisation of polyamide with phenolics , 2012 .

[243]  Matthias Schöck,et al.  First evaluation of alkylpyrazine application as a novel method to decrease microbial contaminations in processed meat products , 2018, AMB Express.

[244]  K. S. Egorova,et al.  Ionic liquids in whole-cell biocatalysis: a compromise between toxicity and efficiency , 2018, Biophysical Reviews.

[245]  C. Welch,et al.  Enabling Biocatalysis by High-Throughput Protein Engineering Using Droplet Microfluidics Coupled to Mass Spectrometry , 2018, ACS omega.

[246]  Tetsuya Deguchi,et al.  Purification and Characterization of a Nylon-Degrading Enzyme , 1998, Applied and Environmental Microbiology.

[247]  Joseph J. Heijnen,et al.  Gas bubble induced oil recovery from emulsions stabilised by yeast components , 2016 .

[248]  Michal Shapira,et al.  Transgene Expression in Microalgae—From Tools to Applications , 2016, Front. Plant Sci..

[249]  P. Domínguez de María,et al.  From batch to fed-batch and to continuous packed-bed reactors: Lipase-catalyzed esterifications in low viscous deep-eutectic-solvents with buffer as cosolvent. , 2019, Bioresource technology.

[250]  Dan S. Tawfik,et al.  The moderately efficient enzyme: evolutionary and physicochemical trends shaping enzyme parameters. , 2011, Biochemistry.

[251]  Frances H Arnold,et al.  Directed Evolution of a Cytochrome P450 Carbene Transferase for Selective Functionalization of Cyclic Compounds. , 2019, Journal of the American Chemical Society.

[252]  Keith E. J. Tyo,et al.  Isoprenoid Pathway Optimization for Taxol Precursor Overproduction in Escherichia coli , 2010, Science.

[253]  Luis Serrano,et al.  In Situ Overlap and Sequence Synthesis During DNA Assembly , 2013, ACS synthetic biology.

[254]  Wolfgang Zimmermann,et al.  Comparison of the hydrolysis of polyethylene terephthalate fibers by a hydrolase from Fusarium oxysporum LCH I and Fusarium solani f. sp. pisi. , 2007, Biotechnology journal.

[255]  Andreas Schmid,et al.  The microbial cell-functional unit for energy dependent multistep biocatalysis. , 2014, Current opinion in biotechnology.

[256]  Birgit Wiltschi,et al.  Expressed protein modifications: making synthetic proteins. , 2012, Methods in molecular biology.

[257]  John E. Harries,et al.  Increases in greenhouse forcing inferred from the outgoing longwave radiation spectra of the Earth in 1970 and 1997 , 2001, Nature.

[258]  Rui Oliveira,et al.  Synthetic Core Promoters as Universal Parts for Fine-Tuning Expression in Different Yeast Species , 2016, ACS synthetic biology.

[259]  G. Iacazio,et al.  Epoxide hydrolase and its application in organic synthesis , 2016 .

[260]  Martina Geier,et al.  Human FMO2-based microbial whole-cell catalysts for drug metabolite synthesis , 2015, Microbial Cell Factories.

[261]  Jibin Sun,et al.  Production of 5-aminolevulinic acid by cell free multi-enzyme catalysis. , 2016, Journal of biotechnology.

[262]  Richard A. Gross,et al.  Cutinase-Catalyzed Hydrolysis of Poly(ethylene terephthalate) , 2009 .

[263]  Roger A. Sheldon,et al.  The combi-CLEA approach: enzymatic cascade synthesis of enantiomerically pure (S)-mandelic acid , 2013 .

[264]  Gabriele Berg,et al.  Plant–microbe interactions promoting plant growth and health: perspectives for controlled use of microorganisms in agriculture , 2009, Applied Microbiology and Biotechnology.

[265]  Yusuf Chisti,et al.  Biotechnology-a sustainable alternative for chemical industry. , 2005, Biotechnology advances.

[266]  Murray R. Gray,et al.  Stabilization of Oil-Water Emulsions by Hydrophobic Bacteria , 2004, Applied and Environmental Microbiology.

[267]  Jean-Marc Daran,et al.  Polycistronic expression of a β-carotene biosynthetic pathway in Saccharomyces cerevisiae coupled to β-ionone production. , 2014, Journal of biotechnology.

[268]  Yue Jiang,et al.  Chlorella species as hosts for genetic engineering and expression of heterologous proteins: Progress, challenge and perspective , 2016, Biotechnology journal.

[269]  J. Thornton,et al.  Splicing by Overlap Extension PCR to Obtain Hybrid DNA Products. , 2016, Methods in molecular biology.

[270]  Nan Zhang,et al.  Biosynthesis and biotechnological application of non-canonical amino acids: Complex and unclear. , 2018, Biotechnology advances.

[271]  David Baker,et al.  Enantioselective enzymes by computational design and in silico screening. , 2015, Angewandte Chemie.

[272]  B. Wanner,et al.  One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[273]  T. Przybycien,et al.  Alternative bioseparation operations: life beyond packed-bed chromatography. , 2004, Current opinion in biotechnology.

[274]  S. Varfolomeyev,et al.  Insertion of an unnatural amino acid into the protein structure: preparation and properties of 3-fluorotyrosine-containing organophosphate hydrolase , 2006 .

[275]  Hafiz M N Iqbal,et al.  Multi-point enzyme immobilization, surface chemistry, and novel platforms: a paradigm shift in biocatalyst design , 2018, Critical reviews in biotechnology.

[276]  Florian Rudroff,et al.  Selective Enzymatic Transformation to Aldehydes in vivo by Fungal Carboxylate Reductase from Neurospora crassa , 2016, Advanced synthesis & catalysis.

[277]  Wolfgang Zimmermann,et al.  Synthetic polyester-hydrolyzing enzymes from thermophilic actinomycetes. , 2014, Advances in applied microbiology.

[278]  Hans Marx,et al.  Synthetic Biology Assisting Metabolic Pathway Engineering , 2016 .

[279]  Yoon-Mo Koo,et al.  Whole-Cell Biocatalysis in Ionic Liquids. , 2018, Advances in biochemical engineering/biotechnology.

[280]  C. M. Dupureur,et al.  Differential effects of isomeric incorporation of fluorophenylalanines into PvuII endonuclease , 2001, Proteins: Structure, Function, and Bioinformatics.

[281]  Bingtao Zhao,et al.  Process effect of microalgal-carbon dioxide fixation and biomass production: A review , 2014 .

[282]  E. Dlugokencky,et al.  Non-CO2 greenhouse gases and climate change , 2011, Nature.

[283]  Claudia Schmidt‐Dannert,et al.  A roadmap for biocatalysis – functional and spatial orchestration of enzyme cascades , 2016, Microbial biotechnology.

[284]  Takeshi Kawabata,et al.  Biochemical and genetic analysis of a cutinase-type polyesterase from a thermophilic Thermobifida alba AHK119 , 2011, Applied Microbiology and Biotechnology.

[285]  Zhengxiang Wang,et al.  Metabolic engineering of Escherichia coli: a sustainable industrial platform for bio-based chemical production. , 2013, Biotechnology advances.

[286]  Clarisse Ribeiro,et al.  Bioactive albumin functionalized polylactic acid membranes for improved biocompatibility , 2013 .

[287]  Tao Chen,et al.  Metabolic engineering of Corynebacterium glutamicum for efficient production of succinate from lignocellulosic hydrolysate , 2018, Biotechnology for Biofuels.

[288]  Gill Stephens,et al.  Screening ionic liquids for use in biotransformations with whole microbial cells , 2011 .

[289]  Gjalt W Huisman,et al.  On the development of new biocatalytic processes for practical pharmaceutical synthesis. , 2013, Current opinion in chemical biology.

[290]  R. Gross,et al.  Exploring chain length selectivity in HIC-catalyzed polycondensation reactions. , 2010, Biomacromolecules.

[291]  François Jérôme,et al.  Deep eutectic solvents: syntheses, properties and applications. , 2012, Chemical Society reviews.

[292]  Micheal C. Wilson,et al.  Metagenomic approaches for exploiting uncultivated bacteria as a resource for novel biosynthetic enzymology. , 2013, Chemistry & biology.

[293]  David Baker,et al.  De Novo Enzyme Design Using Rosetta3 , 2011, PloS one.

[294]  Karl-Erich Jaeger,et al.  Alternative hosts for functional (meta)genome analysis , 2014, Applied Microbiology and Biotechnology.

[295]  Wolfgang Kroutil,et al.  Vinylation of Unprotected Phenols Using a Biocatalytic System. , 2015, Angewandte Chemie.

[296]  Michael E Himmel,et al.  A versatile 2A peptide-based bicistronic protein expressing platform for the industrial cellulase producing fungus, Trichoderma reesei , 2017, Biotechnology for Biofuels.

[297]  Nicholas J. Turner,et al.  Combined Imine Reductase and Amine Oxidase Catalyzed Deracemization of Nitrogen Heterocycles , 2016 .

[298]  Peer M. Schenk,et al.  Microalgae Isolation and Selection for Prospective Biodiesel Production , 2012 .

[299]  Sibylle Herzer,et al.  Downstream Processing Technologies/Capturing and Final Purification : Opportunities for Innovation, Change, and Improvement. A Review of Downstream Processing Developments in Protein Purification. , 2018, Advances in biochemical engineering/biotechnology.

[300]  C. Hertweck,et al.  A Gene Cluster Encoding Rhizoxin Biosynthesis in “Burkholderia rhizoxina”, the Bacterial Endosymbiont of the Fungus Rhizopus microsporus , 2007, Chembiochem : a European journal of chemical biology.

[301]  John M Woodley,et al.  Biocatalysis for pharmaceutical intermediates: the future is now. , 2007, Trends in biotechnology.

[302]  Gordon G Wallace,et al.  High Acetic Acid Production Rate Obtained by Microbial Electrosynthesis from Carbon Dioxide. , 2015, Environmental science & technology.

[303]  Dong Wook Kim,et al.  Genetic incorporation of unnatural amino acids biosynthesized from α-keto acids by an aminotransferase , 2014 .

[304]  John M. Woodley,et al.  Role of Biocatalysis in Sustainable Chemistry. , 2017, Chemical reviews.

[305]  Joseph P. Adams,et al.  Biocatalysis: A Pharma Perspective , 2019, Advanced Synthesis & Catalysis.

[306]  Largus T Angenent,et al.  Cathodes as electron donors for microbial metabolism: which extracellular electron transfer mechanisms are involved? , 2011, Bioresource technology.

[307]  Maximilian Ccjc Ebert,et al.  Computational tools for enzyme improvement: why everyone can - and should - use them. , 2017, Current opinion in chemical biology.

[308]  Wim Soetaert,et al.  Enzymatic glycosylation of small molecules: challenging substrates require tailored catalysts. , 2012, Chemistry.

[309]  J. Pronk,et al.  Pyruvate Metabolism in Saccharomyces cerevisiae , 1996, Yeast.

[310]  Wolfgang Kroutil,et al.  Recent Developments of Cascade Reactions Involving ω‑Transaminases , 2014 .

[311]  Bernd Nidetzky,et al.  Preparative Asymmetric Synthesis of Canonical and Non‐canonical α‐amino Acids Through Formal Enantioselective Biocatalytic Amination of Carboxylic Acids , 2019, Advanced Synthesis & Catalysis.

[312]  Jin Kim Montclare,et al.  Evolving proteins of novel composition. , 2006, Angewandte Chemie.

[313]  Udo Kragl,et al.  Industrial biotechnology—the future of green chemistry? , 2011 .

[314]  S. Atsumi,et al.  Synthetic biology and metabolic engineering approaches to produce biofuels. , 2013, Chemical reviews.

[315]  Kurt Faber,et al.  Biocatalytic Oxidative Cascade for the Conversion of Fatty Acids into α‐Ketoacids via Internal H2O2 Recycling , 2017, Angewandte Chemie.

[316]  P N L Lens,et al.  Biological and Bioelectrochemical Recovery of Critical and Scarce Metals. , 2016, Trends in biotechnology.

[317]  Andreas Karoly Gombert,et al.  Stabilization mechanisms of oil-in-water emulsions by Saccharomyces cerevisiae. , 2016, Colloids and surfaces. B, Biointerfaces.

[318]  Andreas Schmid,et al.  Direct Terminal Alkylamino‐Functionalization via Multistep Biocatalysis in One Recombinant Whole‐Cell Catalyst , 2013 .

[319]  C. Collins,et al.  Modular optimization of multi-gene pathways for fatty acids production in E. coli , 2013, Nature Communications.

[320]  Xueyang Feng,et al.  Compartmentalized metabolic engineering for biochemical and biofuel production. , 2017, Biotechnology journal.

[321]  László Poppe,et al.  Lipase-catalyzed kinetic resolution of 2-methylene-substituted cycloalkanols in batch and continuous-flow modes , 2010 .

[322]  Yoon-Ah Na,et al.  The Actinobacterium Corynebacterium glutamicum, an Industrial Workhorse. , 2016, Journal of microbiology and biotechnology.

[323]  Andreas Schmid,et al.  Whole‐cell‐based CYP153A6‐catalyzed (S)‐limonene hydroxylation efficiency depends on host background and profits from monoterpene uptake via AlkL , 2013, Biotechnology and bioengineering.

[324]  Andreas Schmid,et al.  Biocatalytic conversion of cycloalkanes to lactones using an in‐vivo cascade in Pseudomonas taiwanensis VLB120 , 2018, Biotechnology and bioengineering.

[325]  Jay D. Keasling,et al.  High-Level Production of Amorpha-4,11-Diene, a Precursor of the Antimalarial Agent Artemisinin, in Escherichia coli , 2009, PloS one.

[326]  Jürgen Pleiss,et al.  Enzyme Toolbox: Novel Enantiocomplementary Imine Reductases , 2014, Chembiochem : a European journal of chemical biology.

[327]  Jan Marienhagen,et al.  Direct oxidation of cycloalkanes to cycloalkanones with oxygen in water. , 2013, Angewandte Chemie.

[328]  J. Woodley,et al.  Guidelines and Cost Analysis for Catalyst Production in Biocatalytic Processes , 2011 .

[329]  Tara L. Deans,et al.  Tools and applications in synthetic biology. , 2016, Advanced drug delivery reviews.

[330]  P. Adlercreutz,et al.  Immobilisation and application of lipases in organic media. , 2013, Chemical Society reviews.

[331]  J. Hartley,et al.  DNA cloning using in vitro site-specific recombination. , 2000, Genome research.

[332]  Haruyuki Atomi,et al.  Overview of the genetic tools in the Archaea , 2012, Front. Microbio..

[333]  Hong Xu,et al.  Systematic unravelling of the biosynthesis of poly (L-diaminopropionic acid) in Streptomyces albulus PD-1 , 2015, Scientific Reports.

[334]  Huifeng Jiang,et al.  Engineering microbial cell factories for the production of plant natural products: from design principles to industrial-scale production , 2017, Microbial Cell Factories.

[335]  J Craig Venter,et al.  One-step assembly in yeast of 25 overlapping DNA fragments to form a complete synthetic Mycoplasma genitalium genome , 2008, Proceedings of the National Academy of Sciences.

[336]  Pierre Friedlingstein,et al.  Persistence of climate changes due to a range of greenhouse gases , 2010, Proceedings of the National Academy of Sciences.

[337]  M. Ikeda Towards bacterial strains overproducing l-tryptophan and other aromatics by metabolic engineering , 2006, Applied Microbiology and Biotechnology.

[338]  W. R. Farmer,et al.  Improving lycopene production in Escherichia coli by engineering metabolic control , 2000, Nature Biotechnology.

[339]  Frank Hollmann,et al.  A Bi‐enzymatic Convergent Cascade for ε‐Caprolactone Synthesis Employing 1,6‐Hexanediol as a ‘Double‐Smart Cosubstrate’ , 2015 .

[340]  Frances H Arnold,et al.  Directed Evolution: Bringing New Chemistry to Life , 2017, Angewandte Chemie.

[341]  Wolfgang Wiechert,et al.  Tailoring a Stabilized Variant of Hydroxynitrile Lyase from Arabidopsis thaliana , 2012, Chembiochem : a European journal of chemical biology.

[342]  Nediljko Budisa,et al.  Azatryptophans endow proteins with intrinsic blue fluorescence , 2008, Proceedings of the National Academy of Sciences.

[343]  Jin Kim Montclare,et al.  Enhanced Refoldability and Thermoactivity of Fluorinated Phosphotriesterase , 2011, Chembiochem : a European journal of chemical biology.

[344]  Martin J. Warren,et al.  Employing bacterial microcompartment technology to engineer a shell-free enzyme-aggregate for enhanced 1,2-propanediol production in Escherichia coli , 2016, Metabolic engineering.

[345]  Bernd Nidetzky,et al.  Biotransformations in microstructured reactors: more than flowing with the stream? , 2011, Trends in biotechnology.

[346]  Ali Movahedi,et al.  Multiple overlap extension PCR (MOE-PCR): an effective technical shortcut to high throughput synthetic biology , 2016 .

[347]  Karl-Erich Jaeger,et al.  Novel tools for the functional expression of metagenomic DNA. , 2010, Methods in molecular biology.

[348]  Pamela A Silver,et al.  Encapsulation as a Strategy for the Design of Biological Compartmentalization. , 2016, Journal of molecular biology.

[349]  Krist V. Gernaey,et al.  Advances in the Process Development of Biocatalytic Processes , 2013 .

[350]  U. Bornscheuer,et al.  An enzyme cascade synthesis of ε-caprolactone and its oligomers. , 2015, Angewandte Chemie.

[351]  Daniel Mink,et al.  Enabling Selective and Sustainable P450 Oxygenation Technology. Production of 4-Hydroxy-α-isophorone on Kilogram Scale , 2016 .

[352]  Huimin Zhao,et al.  High Throughput Screening and Selection Methods for Directed Enzyme Evolution , 2014, Industrial & engineering chemistry research.

[353]  Sangkyu Park,et al.  Expression of serotonin derivative synthetic genes on a single self-processing polypeptide and the production of serotonin derivatives in microbes , 2008, Applied Microbiology and Biotechnology.

[354]  Jens Schrader,et al.  Efficient hydroxylation of 1,8-cineole with monoterpenoid-resistant recombinant Pseudomonas putida GS1 , 2016, World journal of microbiology & biotechnology.

[355]  Martin D. Ryan,et al.  Ribosome “Skipping”: “Stop-Carry On” or “StopGo” Translation , 2010 .

[356]  Wolfgang Kroutil,et al.  Recent biocatalytic oxidation–reduction cascades , 2011, Current opinion in chemical biology.

[357]  F. Arnold Design by Directed Evolution , 1998 .

[358]  Bernd Nidetzky,et al.  Leloir Glycosyltransferases as Biocatalysts for Chemical Production , 2018 .

[359]  S. Venkata Mohan,et al.  Microbial catalyzed electrochemical systems: a bio-factory with multi-facet applications. , 2014, Bioresource technology.

[360]  A. Furtado,et al.  Long-read sequencing of the coffee bean transcriptome reveals the diversity of full-length transcripts , 2017, GigaScience.

[361]  Durda Vasic-Racki,et al.  History of Industrial Biotransformations Dreams and Realities , 2006 .

[362]  Karthish Manthiram,et al.  Multiply mutated Gaussia luciferases provide prolonged and intense bioluminescence. , 2009, Biochemical and biophysical research communications.

[363]  R. Milo,et al.  A survey of carbon fixation pathways through a quantitative lens. , 2012, Journal of experimental botany.

[364]  J. Hahn,et al.  Efficient production of acetoin in Saccharomyces cerevisiae by disruption of 2,3-butanediol dehydrogenase and expression of NADH oxidase , 2016, Scientific Reports.

[365]  D. Baker,et al.  The coming of age of de novo protein design , 2016, Nature.

[366]  Baojun Wang,et al.  CyanoGate: A Modular Cloning Suite for Engineering Cyanobacteria Based on the Plant MoClo Syntax1[OPEN] , 2019, Plant Physiology.

[367]  Ren Wei,et al.  Microbial enzymes for the recycling of recalcitrant petroleum‐based plastics: how far are we? , 2017, Microbial biotechnology.

[368]  W. Leitner,et al.  Biocatalysis in ionic liquids: batchwise and continuous flow processes using supercritical carbon dioxide as the mobile phase. , 2002, Chemical communications.

[369]  Krist V Gernaey,et al.  Microscale technology and biocatalytic processes: opportunities and challenges for synthesis. , 2015, Trends in biotechnology.

[370]  Jan Marienhagen,et al.  Phosphorothioate-based ligase-independent gene cloning (PLICing): An enzyme-free and sequence-independent cloning method. , 2010, Analytical biochemistry.

[371]  R. Abed,et al.  Metabolic engineering of Cyanobacteria and microalgae for enhanced production of biofuels and high‐value products , 2016, Journal of applied microbiology.

[372]  Aman A Desai,et al.  Sitagliptin manufacture: a compelling tale of green chemistry, process intensification, and industrial asymmetric catalysis. , 2011, Angewandte Chemie.

[373]  C. Satishchandran,et al.  Chain reaction cloning: a one-step method for directional ligation of multiple DNA fragments. , 2000, Gene.

[374]  Cathleen Zeymer,et al.  Directed Evolution of Protein Catalysts. , 2018, Annual review of biochemistry.

[375]  D. Court,et al.  Genetic engineering using homologous recombination. , 2002, Annual review of genetics.

[376]  Guo-Qiang Chen,et al.  Synthetic Biology of Polyhydroxyalkanoates (PHA). , 2018, Advances in biochemical engineering/biotechnology.

[377]  Bernd Nidetzky,et al.  Glycosyltransferase cascades made fit for chemical production: Integrated biocatalytic process for the natural polyphenol C‐glucoside nothofagin , 2018, Biotechnology and bioengineering.

[378]  Ana M Azevedo,et al.  Chromatography-free recovery of biopharmaceuticals through aqueous two-phase processing. , 2009, Trends in biotechnology.

[379]  Derek R Lovley,et al.  Graphite electrodes as electron donors for anaerobic respiration. , 2004, Environmental microbiology.

[380]  Bonnie Berger,et al.  Metagenomic binning through low-density hashing , 2017, bioRxiv.

[381]  Moritz Pott,et al.  Speeding up enzyme discovery and engineering with ultrahigh-throughput methods. , 2018, Current opinion in structural biology.

[382]  Sergio Riva,et al.  New Trends in the In Situ Enzymatic Recycling of NAD(P)(H) Cofactors , 2014 .

[383]  Colin J Jackson,et al.  Improving a natural enzyme activity through incorporation of unnatural amino acids. , 2011, Journal of the American Chemical Society.

[384]  Feijian Ni,et al.  Research on ASR in China and its energy recycling with pyrolysis method , 2015 .

[385]  Ralf J. M. Weber,et al.  Mass appeal: metabolite identification in mass spectrometry-focused untargeted metabolomics , 2012, Metabolomics.

[386]  Paul N. Devine,et al.  Biocatalytic Asymmetric Synthesis of Chiral Amines from Ketones Applied to Sitagliptin Manufacture , 2010, Science.

[387]  Sergio Sánchez,et al.  Synthetic biology era: Improving antibiotic's world. , 2017, Biochemical pharmacology.

[388]  R. Saiki,et al.  A general method of in vitro preparation and specific mutagenesis of DNA fragments: study of protein and DNA interactions. , 1988, Nucleic acids research.

[389]  Juliana Christina Thomas,et al.  Biocatalysis in continuous-flow mode: A case-study in the enzymatic kinetic resolution of secondary alcohols via acylation and deacylation reactions mediated by Novozym 435® , 2017 .

[390]  V. Křen,et al.  Sweet antibiotics - the role of glycosidic residues in antibiotic and antitumor activity and their randomization. , 2008, FEMS microbiology reviews.

[391]  Jörg Bohlmann,et al.  Enzymes for synthetic biology of ambroxide-related diterpenoid fragrance compounds. , 2015, Advances in biochemical engineering/biotechnology.

[392]  Michael Sander,et al.  Biomimetic Approach to Enhance Enzymatic Hydrolysis of the Synthetic Polyester Poly(1,4-butylene adipate): Fusing Binding Modules to Esterases. , 2015, Biomacromolecules.

[393]  W. Brondyk Selecting an appropriate method for expressing a recombinant protein. , 2009, Methods in enzymology.

[394]  Jesse Greener,et al.  A Generalized Kinetic Framework Applied to Whole‐Cell Bioelectrocatalysis in Bioflow Reactors Clarifies Performance Enhancements for Geobacter Sulfurreducens Biofilms , 2019, ChemElectroChem.

[395]  Awanish Kumar,et al.  Strategies for the Production of Recombinant Protein in Escherichia coli , 2013, The Protein Journal.

[396]  J. Woodley,et al.  Choice of biocatalyst form for scalable processes. , 2006, Biochemical Society transactions.

[397]  Deepak Pant,et al.  Carbon dioxide reduction by mixed and pure cultures in microbial electrosynthesis using an assembly of graphite felt and stainless steel as a cathode. , 2015, Bioresource technology.

[398]  J. Bäckvall,et al.  Artificial Metalloenzymes in Asymmetric Catalysis: Key Developments and Future Directions , 2015 .

[399]  Joerg H. Schrittwieser,et al.  Multi-Enzymatic Cascade Reactions: Overview and Perspectives , 2011 .

[400]  Enrique Herrero Acero,et al.  Enzymatic hydrolysis of poly(ethyleneterephthalate) used for and analysed by pore modification of track-etched membranes. , 2017, New biotechnology.

[401]  Pierre Friedlingstein,et al.  Carbon cycle feedbacks and future climate change , 2015, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences.

[402]  Adam M. Feist,et al.  Generation of an atlas for commodity chemical production in Escherichia coli and a novel pathway prediction algorithm, GEM-Path. , 2014, Metabolic engineering.

[403]  A. John Blacker,et al.  Chapter 12:The Growing Impact of Continuous Flow Methods on the Twelve Principles of Green Chemistry , 2016 .

[404]  Eduardo Busto Recent Developments in the Preparation of Carbohydrate Derivatives from Achiral Building Blocks by using Aldolases , 2016 .

[405]  W. Koh,et al.  Single-cell genome sequencing: current state of the science , 2016, Nature Reviews Genetics.

[406]  S. Tringe,et al.  Metatranscriptomic insights on gene expression and regulatory controls in Candidatus Accumulibacter phosphatis , 2015, The ISME Journal.

[407]  D. Court,et al.  Recombineering: a homologous recombination-based method of genetic engineering , 2009, Nature Protocols.

[408]  Bernd Nidetzky,et al.  Integration of whole-cell reaction and product isolation: Highly hydrophobic solvents promote in situ substrate supply and simplify extractive product isolation. , 2017, Journal of biotechnology.

[409]  Wei-Hua Chen,et al.  The MASTER (methylation-assisted tailorable ends rational) ligation method for seamless DNA assembly , 2013, Nucleic acids research.

[410]  Byung-Gee Kim,et al.  Engineering Transaminase for Stability Enhancement and Site‐Specific Immobilization through Multiple Noncanonical Amino Acids Incorporation , 2015 .

[411]  Wolfgang Kroutil,et al.  Stereoselective Cascade to C3-Methylated Strictosidine Derivatives Employing Transaminases and Strictosidine Synthases , 2016 .

[412]  Ka-Yiu San,et al.  Metabolic engineering of Escherichia coli: increase of NADH availability by overexpressing an NAD(+)-dependent formate dehydrogenase. , 2002, Metabolic engineering.

[413]  Yong Jiang,et al.  Expanding the product spectrum of value added chemicals in microbial electrosynthesis through integrated process design-A review. , 2018, Bioresource technology.

[414]  Daniele Mancinelli,et al.  Nano-Filtration and Ultra-Filtration Ceramic Membranes for Food Processing: A Mini Review , 2015 .

[415]  Jian Chen,et al.  Enhanced activity toward PET by site-directed mutagenesis of Thermobifida fusca cutinase-CBM fusion protein. , 2013, Carbohydrate polymers.

[416]  Wei Zhang,et al.  Multigene Pathway Engineering with Regulatory Linkers (M-PERL). , 2016, ACS synthetic biology.

[417]  Mauro Majone,et al.  Bioelectrochemical reduction of CO(2) to CH(4) via direct and indirect extracellular electron transfer by a hydrogenophilic methanogenic culture. , 2010, Bioresource technology.

[418]  Clemens Mayer,et al.  Directed Evolution of a Designer Enzyme Featuring an Unnatural Catalytic Amino Acid , 2019, Angewandte Chemie.

[419]  D. Barrie Johnson,et al.  Biomining in reverse gear: Using bacteria to extract metals from oxidised ores , 2015 .

[420]  Jef D Boeke,et al.  Coupling Yeast Golden Gate and VEGAS for Efficient Assembly of the Violacein Pathway in Saccharomyces cerevisiae. , 2018, Methods in molecular biology.

[421]  P. D. de Jong,et al.  Ligation-independent cloning of PCR products (LIC-PCR). , 1990, Nucleic acids research.

[422]  Christopher K Prier,et al.  Recent preparative applications of redox enzymes. , 2019, Current opinion in chemical biology.

[423]  Byung-Gee Kim,et al.  Enhancing Thermostability and Organic Solvent Tolerance of ω-Transaminase through Global Incorporation of Fluorotyrosine , 2014 .

[424]  Frank Hannemann,et al.  A recombinant CYP11B1 dependent Escherichia coli biocatalyst for selective cortisol production and optimization towards a preparative scale , 2015, Microbial Cell Factories.

[425]  Bernd Nidetzky,et al.  Process intensification for O2‐dependent enzymatic transformations in continuous single‐phase pressurized flow , 2019, Biotechnology and bioengineering.

[426]  David Eisen,et al.  Orchestrating the biosynthesis of an unnatural pyrrolysine amino Acid for its direct incorporation into proteins inside living cells. , 2015, Chemistry.

[427]  Gabriele Sadowski,et al.  Applied catastrophic phase inversion: a continuous non-centrifugal phase separation step in biphasic whole-cell biocatalysis , 2016, Journal of Industrial Microbiology & Biotechnology.

[428]  K. Murphy,et al.  Lambda Gam protein inhibits the helicase and chi-stimulated recombination activities of Escherichia coli RecBCD enzyme , 1991, Journal of bacteriology.

[429]  Sergey I. Nikolenko,et al.  SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing , 2012, J. Comput. Biol..

[430]  Aldo R. Boccaccini,et al.  Engineering of Metabolic Pathways by Artificial Enzyme Channels , 2015, Front. Bioeng. Biotechnol..

[431]  S. Elledge,et al.  Harnessing homologous recombination in vitro to generate recombinant DNA via SLIC , 2007, Nature Methods.

[432]  Lidija Fras Zemljič,et al.  Comparison of oxygen plasma and cutinase effect on polyethylene terephthalate surface , 2013 .

[433]  Geert-Jan Witkamp,et al.  Influence of solute type and concentration on ice scaling in fluidized bed ice crystallizers , 2006 .

[434]  Guobin Liang,et al.  Optimizing mixed culture of two acidophiles to improve copper recovery from printed circuit boards (PCBs). , 2013, Journal of hazardous materials.

[435]  Huimin Zhao,et al.  Directed evolution of a cellobiose utilization pathway in Saccharomyces cerevisiae by simultaneously engineering multiple proteins , 2013, Microbial Cell Factories.

[436]  Ajay Singh,et al.  Developments in the use of Bacillus species for industrial production. , 2004, Canadian journal of microbiology.

[437]  Frank Buchholz,et al.  A new logic for DNA engineering using recombination in Escherichia coli , 1998, Nature Genetics.

[438]  V. Farmer,et al.  Reduction of certain aromatic acids to aldehydes and alcohols by Polystictus versicolor. , 1959, Biochimica et biophysica acta.

[439]  Keith E. J. Tyo,et al.  Stabilized gene duplication enables long-term selection-free heterologous pathway expression , 2009, Nature Biotechnology.

[440]  P. Wang,et al.  Transforming Flask Reaction into Cell-Based Synthesis: Production of Polyhydroxylated Molecules via Engineered Escherichia coli , 2015 .

[441]  G. Bennett,et al.  Novel pathway engineering design of the anaerobic central metabolic pathway in Escherichia coli to increase succinate yield and productivity. , 2005, Metabolic engineering.

[442]  Lothar Brecker,et al.  Diastereoselective Synthesis of Glycosyl Phosphates by Using a Phosphorylase–Phosphatase Combination Catalyst , 2015, Angewandte Chemie.

[443]  Gerald Striedner,et al.  High-level biosynthesis of norleucine in E. coli for the economic labeling of proteins. , 2016, Journal of biotechnology.

[444]  D. Bastin,et al.  Bio hydrometallurgical recovery of metals from Fine Shredder Residues , 2011 .

[445]  Michael Sauer,et al.  Targeting enzymes to the right compartment: metabolic engineering for itaconic acid production by Aspergillus niger. , 2013, Metabolic engineering.

[446]  Anton Glieder,et al.  Production of Recombinant Human Aldehyde Oxidase in Escherichia coli and Optimization of Its Application for the Preparative Synthesis of Oxidized Drug Metabolites , 2014 .

[447]  Yeo Joon Yoon,et al.  Enhanced Heterologous Production of Desosaminyl Macrolides and Their Hydroxylated Derivatives by Overexpression of the pikD Regulatory Gene in Streptomyces venezuelae , 2008, Applied and Environmental Microbiology.

[448]  Gregory Butler,et al.  SnowyOwl: accurate prediction of fungal genes by using RNA-Seq and homology information to select among ab initio models , 2014, BMC Bioinformatics.

[449]  Maria C Cuellar,et al.  Breaking oil-in-water emulsions stabilized by yeast. , 2015, Colloids and surfaces. B, Biointerfaces.

[450]  Yasuhisa Asano,et al.  Hydroxynitrile Lyases: Insights into Biochemistry, Discovery, and Engineering , 2011 .

[451]  Sathya Srinivasachari,et al.  Automation aided optimization of cloning, expression and purification of enzymes of the bacterial sialic acid catabolic and sialylation pathways enzymes for structural studies , 2018, Microbial biotechnology.

[452]  Manfred Zinn,et al.  Enzymatic surface hydrolysis of PET : effect of structural diversity on kinetic properties of cutinases from thermobifida , 2011 .

[453]  David Baker,et al.  An exciting but challenging road ahead for computational enzyme design , 2010, Protein science : a publication of the Protein Society.

[454]  Jens Schrader,et al.  De novo production of the monoterpenoid geranic acid by metabolically engineered Pseudomonas putida , 2014, Microbial Cell Factories.

[455]  Wolfgang Kroutil,et al.  One-Pot, Two-Module Three-Step Cascade To Transform Phenol Derivatives to Enantiomerically Pure (R)- or (S)-p-Hydroxyphenyl Lactic Acids , 2016 .

[456]  Matthias Hess,et al.  A perspective: metatranscriptomics as a tool for the discovery of novel biocatalysts. , 2009, Journal of biotechnology.

[457]  Fernando Geu-Flores,et al.  USER fusion: a rapid and efficient method for simultaneous fusion and cloning of multiple PCR products , 2007, Nucleic acids research.

[458]  Joseph A. Rollin,et al.  High-yield hydrogen production from biomass by in vitro metabolic engineering: Mixed sugars coutilization and kinetic modeling , 2015, Proceedings of the National Academy of Sciences.

[459]  Joshua Britton,et al.  Continuous flow biocatalysis. , 2018, Chemical Society reviews.

[460]  Jan Marienhagen,et al.  Biocatalytic hydroxylation of n-butane with in situ cofactor regeneration at low temperature and under normal pressure , 2012, Beilstein journal of organic chemistry.

[461]  Florian Rudroff,et al.  Fusion proteins of an enoate reductase and a Baeyer-Villiger monooxygenase facilitate the synthesis of chiral lactones , 2017, Biological chemistry.

[462]  A. A. Yolov,et al.  Constructing DNA by polymerase recombination , 1990, Nucleic Acids Res..

[463]  Jay D Keasling,et al.  CasEMBLR: Cas9-Facilitated Multiloci Genomic Integration of in Vivo Assembled DNA Parts in Saccharomyces cerevisiae. , 2015, ACS synthetic biology.

[464]  Veeresh Juturu,et al.  Heterologous Protein Expression in Pichia pastoris: Latest Research Progress and Applications , 2018, Chembiochem : a European journal of chemical biology.

[465]  Harald Pichler,et al.  Identifying and engineering the ideal microbial terpenoid production host , 2019, Applied Microbiology and Biotechnology.

[466]  N. Ferrer-Miralles,et al.  General introduction: recombinant protein production and purification of insoluble proteins. , 2015, Methods in molecular biology.

[467]  Alessandro Pellis,et al.  Fully renewable polyesters via polycondensation catalyzed by Thermobifida cellulosilytica cutinase 1: an integrated approach , 2017 .

[468]  N. N. Gerber,et al.  Geosmin, an Earthy-Smelling Substance Isolated from Actinomycetes , 1965 .

[469]  Alessandro Pellis,et al.  Biocatalyzed approach for the surface functionalization of poly(L‐lactic acid) films using hydrolytic enzymes , 2015, Biotechnology journal.

[470]  Jian Chen,et al.  Cutinase: characteristics, preparation, and application. , 2013, Biotechnology advances.

[471]  Birgit Wiltschi,et al.  Protein Building Blocks and the Expansion of the Genetic Code , 2016 .

[472]  João G. Crespo Developments in Membrane Science for Downstream Processing , 2009 .

[473]  R. Heal,et al.  Novel intercellular communication system in Escherichia coli that confers antibiotic resistance between physically separated populations , 2002, Journal of applied microbiology.

[474]  L. Lebrun,et al.  New grafted polymer membrane for extraction, separation and recovery processes of sucrose, glucose and fructose from the sugar industry discharges , 2018, Separation and Purification Technology.

[475]  Anna H. Kaksonen,et al.  The role of microorganisms in gold processing and recovery—A review , 2014 .

[476]  Lothar Elling,et al.  Enzyme Module Systems for the Synthesis of Uridine 5′‐Diphospho‐α‐D‐glucuronic Acid and Non‐Sulfated Human Natural Killer Cell‐1 (HNK‐1) Epitope , 2015 .

[477]  D. Bolam,et al.  Carbohydrate-binding modules: fine-tuning polysaccharide recognition. , 2004, The Biochemical journal.

[478]  P. Kim,et al.  Recombinant Protein Expression System in Corynebacterium glutamicum and Its Application , 2018, Front. Microbiol..

[479]  S. Atsumi,et al.  Toward aldehyde and alkane production by removing aldehyde reductase activity in Escherichia coli. , 2014, Metabolic engineering.

[480]  J. Keasling,et al.  High-level semi-synthetic production of the potent antimalarial artemisinin , 2013, Nature.

[481]  Kumaran Narayanan,et al.  Bacterial Artificial Chromosome Mutagenesis Using Recombineering , 2010, Journal of biomedicine & biotechnology.

[482]  Wolfgang Zimmermann,et al.  Engineered bacterial polyester hydrolases efficiently degrade polyethylene terephthalate due to relieved product inhibition , 2016, Biotechnology and bioengineering.

[483]  Andrew J. Carnell,et al.  Synthetic Cascades by Combining Evolved Biocatalysts and Artificial Enzymes , 2014 .

[484]  Helmut Schwab,et al.  Design of inducible expression vectors for improved protein production in Ralstonia eutropha H16 derived host strains. , 2016, Journal of biotechnology.

[485]  D. Barrie Johnson,et al.  Ferredox: A biohydrometallurgical processing concept for limonitic nickel laterites , 2011 .

[486]  Andrew B. Martin,et al.  Generation of a bacterium with a 21 amino acid genetic code. , 2003, Journal of the American Chemical Society.

[487]  S. Dequin,et al.  Cofactor engineering in Saccharomyces cerevisiae: Expression of a H2O-forming NADH oxidase and impact on redox metabolism. , 2006, Metabolic engineering.

[488]  Alessandro Pellis,et al.  Understanding Potentials and Restrictions of Solvent‐Free Enzymatic Polycondensation of Itaconic Acid: An Experimental and Computational Analysis , 2015 .

[489]  Anton Glieder,et al.  Engineering the Pichia pastoris methanol oxidation pathway for improved NADH regeneration during whole-cell biotransformation. , 2010, Metabolic engineering.

[490]  Andreas Schmid,et al.  Constitutively solvent‐tolerant Pseudomonas taiwanensis VLB120∆ C∆ ttgV supports particularly high‐styrene epoxidation activities when grown under glucose excess conditions , 2019, Biotechnology and bioengineering.

[491]  Cerasela Zoica Dinu,et al.  Industrial Applications of Enzymes: Recent Advances, Techniques, and Outlooks , 2018, Catalysts.

[492]  J. Mielenz,et al.  Metabolic Engineering of Candida Tropicalis for the Production of Long–Chain Dicarboxylic Acids , 1992, Bio/Technology.

[493]  Diego A. Alonso,et al.  Deep Eutectic Solvents: The Organic Reaction Medium of the Century , 2016 .

[494]  Maria Lodovica Gullino,et al.  Volatile organic compounds: a potential direct long-distance mechanism for antagonistic action of Fusarium oxysporum strain MSA 35. , 2009, Environmental microbiology.

[495]  A. Schmid,et al.  Outer Membrane Protein AlkL Boosts Biocatalytic Oxyfunctionalization of Hydrophobic Substrates in Escherichia coli , 2012, Applied and Environmental Microbiology.

[496]  Peter G. Schultz,et al.  Genomically Recoded Organisms Expand Biological Functions , 2013, Science.

[497]  Guangjuan Luo,et al.  Synthetic biology approaches to access renewable carbon source utilization in Corynebacterium glutamicum , 2018, Applied Microbiology and Biotechnology.

[498]  C. R. Wilson,et al.  Transformation of Fatty Acids Catalyzed by Cytochrome P450 Monooxygenase Enzymes of Candida tropicalis , 2003, Applied and Environmental Microbiology.

[499]  Youming Zhang,et al.  RecE/RecT and Redα/Redβ initiate double-stranded break repair by specifically interacting with their respective partners , 2000, Genes & Development.

[500]  Anita Šalić,et al.  Synergy of Microtechnology and Biotechnology: Microreactors as an Effective Tool
for Biotransformation Processes§ , 2018, Food technology and biotechnology.

[501]  Karl Gruber,et al.  Improving the Properties of Bacterial R‐Selective Hydroxynitrile Lyases for Industrial Applications , 2015 .

[502]  Christoph Wittmann,et al.  Metabolic engineering of industrial platform microorganisms for biorefinery applications--optimization of substrate spectrum and process robustness by rational and evolutive strategies. , 2013, Bioresource technology.

[503]  Nicholas J Turner,et al.  Artificial concurrent catalytic processes involving enzymes. , 2015, Chemical communications.

[504]  Bin Jia,et al.  Engineered biosynthesis of natural products in heterologous hosts. , 2015, Chemical Society reviews.

[505]  Douglas D Young,et al.  Playing with the Molecules of Life. , 2018, ACS chemical biology.

[506]  Frank Hollmann,et al.  Peroxygenase-Catalyzed Oxyfunctionalization Reactions Promoted by the Complete Oxidation of Methanol. , 2016, Angewandte Chemie.

[507]  Gunvor Røkke,et al.  BioBrick assembly standards and techniques and associated software tools. , 2014, Methods in molecular biology.

[508]  Rajni Hatti-Kaul,et al.  Improved production of 3-hydroxypropionaldehyde by complex formation with bisulfite during biotransformation of glycerol. , 2013, Biotechnology and bioengineering.

[509]  D. Craft,et al.  Identification and Characterization of the CYP52 Family of Candida tropicalis ATCC 20336, Important for the Conversion of Fatty Acids and Alkanes to α,ω-Dicarboxylic Acids , 2003, Applied and Environmental Microbiology.

[510]  Kurt Faber,et al.  Overcoming co-product inhibition in the nicotinamide independent asymmetric bioreduction of activated C=C-bonds using flavin-dependent ene-reductases , 2013, Biotechnology and bioengineering.

[511]  Ingo Klimant,et al.  Banning toxic heavy-metal catalysts from paints: enzymatic cross-linking of alkyd resins , 2013 .

[512]  T. L. Chacón-Lee,et al.  Microalgae for "Healthy" Foods-Possibilities and Challenges. , 2010, Comprehensive reviews in food science and food safety.

[513]  N. Friedman,et al.  Trinity: reconstructing a full-length transcriptome without a genome from RNA-Seq data , 2011, Nature Biotechnology.

[514]  Jörg Pietruszka,et al.  Enantioselective, Catalytic One‐Pot Synthesis of γ‐Butyrolactone‐Based Fragrances , 2018, ChemCatChem.

[515]  Weihong Yang,et al.  Investigation on the low-temperature pyrolysis of automotive shredder residue (ASR) for energy recovery and metal recycling. , 2018, Waste management.

[516]  Adam Godzik,et al.  Shotgun metaproteomics of the human distal gut microbiota , 2008, The ISME Journal.

[517]  Jay D Keasling,et al.  Metabolic engineering of microorganisms for isoprenoid production. , 2008, Natural product reports.

[518]  John M. Woodley,et al.  Reactor Selection for Effective Continuous Biocatalytic Production of Pharmaceuticals , 2019, Catalysts.

[519]  J. E. McIntyre,et al.  The Historical Development of Polyesters , 2004 .

[520]  G. Gilardi,et al.  Chimeric P450 enzymes: Activity of artificial redox fusions driven by different reductases for biotechnological applications , 2013, Biotechnology and applied biochemistry.

[521]  Johnny Gonzales,et al.  In vitro galactosylation of human IgG at 1 kg scale using recombinant galactosyltransferase. , 2005, Biotechnology and bioengineering.

[522]  Ana Tavares,et al.  New Generations of Ionic Liquids Applied to Enzymatic Biocatalysis , 2013 .

[523]  Morten Meldal,et al.  Peptidotriazoles on solid phase: [1,2,3]-triazoles by regiospecific copper(i)-catalyzed 1,3-dipolar cycloadditions of terminal alkynes to azides. , 2002, The Journal of organic chemistry.

[524]  Claudia Bernal,et al.  Integrating enzyme immobilization and protein engineering: An alternative path for the development of novel and improved industrial biocatalysts. , 2018, Biotechnology advances.

[525]  Alessandro Pellis,et al.  Exploring mild enzymatic sustainable routes for the synthesis of bio-degradable aromatic-aliphatic oligoesters. , 2016, Biotechnology journal.

[526]  Edward A McKenzie,et al.  Expression of recombinant proteins in insect and mammalian cells. , 2018, Methods.

[527]  An-Ping Zeng,et al.  The Connectivity Structure, Giant Strong Component and Centrality of Metabolic Networks , 2003, Bioinform..

[528]  Anne Pohlmann,et al.  Autotrophic Production of Stable-Isotope-Labeled Arginine in Ralstonia eutropha Strain H16 , 2012, Applied and Environmental Microbiology.

[529]  J. Woodley,et al.  Process limitations of a whole-cell P450 catalyzed reaction using a CYP153A-CPR fusion construct expressed in Escherichia coli , 2016, Applied Microbiology and Biotechnology.

[530]  P. Silver,et al.  A Catalytic Nanoreactor Based on in Vivo Encapsulation of Multiple Enzymes in an Engineered Protein Nanocompartment , 2016, Chembiochem : a European journal of chemical biology.

[531]  Minghua Zhou,et al.  Advances in bioleaching for recovery of metals and bioremediation of fuel ash and sewage sludge. , 2018, Bioresource technology.

[532]  Enrique Herrero Acero,et al.  Fusion of binding domains to Thermobifida cellulosilytica cutinase to tune sorption characteristics and enhancing PET hydrolysis. , 2013, Biomacromolecules.

[533]  C. Smolke,et al.  Advancing secondary metabolite biosynthesis in yeast with synthetic biology tools. , 2012, FEMS yeast research.

[534]  M. Hofrichter,et al.  Oxidations catalyzed by fungal peroxygenases. , 2014, Current opinion in chemical biology.

[535]  Daniel Mink,et al.  Large-Scale Synthesis of New Pyranoid Building Blocks Based on Aldolase-Catalysed Carbon-Carbon Bond Formation , 2008 .

[536]  G. Tasnádi,et al.  Relevant Practical Applications of Bioreduction Processes in the Synthesis of Active Pharmaceutical Ingredients , 2013 .

[537]  Maike Rabe,et al.  Enzymatic and chemical hydrolysis of poly(ethylene terephthalate) fabrics , 2008 .

[538]  Martin Hartmann,et al.  Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities , 2009, Applied and Environmental Microbiology.

[539]  Gabriele Berg,et al.  Mining for Nonribosomal Peptide Synthetase and Polyketide Synthase Genes Revealed a High Level of Diversity in the Sphagnum Bog Metagenome , 2015, Applied and Environmental Microbiology.

[540]  Bernd Nidetzky,et al.  Human Enzymes for Organic Synthesis , 2018, Angewandte Chemie.

[541]  Carola Engler,et al.  Golden Gate Shuffling: A One-Pot DNA Shuffling Method Based on Type IIs Restriction Enzymes , 2009, PloS one.

[542]  Dirk Weuster-Botz,et al.  Efficient whole-cell biotransformation in a biphasic ionic liquid/water system. , 2004, Angewandte Chemie.

[543]  Heming Wang,et al.  A comprehensive review of microbial electrochemical systems as a platform technology. , 2013, Biotechnology advances.

[544]  Aravind Madhavan,et al.  Applications of Microbial Enzymes in Food Industry. , 2018, Food technology and biotechnology.

[545]  K. R. Seddon,et al.  Ionic liquids: a taste of the future. , 2003, Nature materials.

[546]  M. Prentice,et al.  Bacterial microcompartments moving into a synthetic biological world. , 2013, Journal of biotechnology.

[547]  M. Platzer,et al.  Polyketide assembly lines of uncultivated sponge symbionts from structure-based gene targeting. , 2009, Nature chemical biology.

[548]  X. Chen,et al.  Specific cloning of human DNA as yeast artificial chromosomes by transformation-associated recombination. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[549]  Murray Moo-Young,et al.  Coupling the CRISPR/Cas9 System with Lambda Red Recombineering Enables Simplified Chromosomal Gene Replacement in Escherichia coli , 2015, Applied and Environmental Microbiology.

[550]  Jianfeng Bai,et al.  Bioleaching of metals from printed wire boards by Acidithiobacillus ferrooxidans and Acidithiobacillus thiooxidans and their mixture. , 2009, Journal of hazardous materials.

[551]  Quinn Lu,et al.  Production of protein complexes via co-expression. , 2011, Protein expression and purification.

[552]  Rajni Hatti-Kaul,et al.  Biotransformation of glycerol to 3-hydroxypropionaldehyde: improved production by in situ complexation with bisulfite in a fed-batch mode and separation on anion exchanger. , 2013, Journal of biotechnology.

[553]  Andrew A. Lacis,et al.  Atmospheric CO2: Principal Control Knob Governing Earth’s Temperature , 2010, Science.

[554]  J. Liao,et al.  Escherichia coli as a host for metabolic engineering. , 2018, Metabolic engineering.

[555]  Florian Rudroff,et al.  Opportunities and challenges for combining chemo- and biocatalysis , 2018, Nature Catalysis.

[556]  Vlada B Urlacher,et al.  Cytochrome P450 Monooxygenases in Biotechnology and Synthetic Biology. , 2019, Trends in biotechnology.

[557]  D. Botstein,et al.  Plasmid construction by homologous recombination in yeast. , 1987, Gene.

[558]  Antoine Danchin,et al.  From dirt to industrial applications: Pseudomonas putida as a Synthetic Biology chassis for hosting harsh biochemical reactions. , 2016, Current opinion in chemical biology.

[559]  Shirish H. Sonawane,et al.  A review on microreactors: Reactor fabrication, design, and cutting-edge applications , 2018, Chemical Engineering Science.

[560]  Daniela Monti,et al.  Amine transaminases in chiral amines synthesis: recent advances and challenges , 2017, World journal of microbiology & biotechnology.

[561]  Kechun Zhang,et al.  Expanding metabolism for total biosynthesis of the nonnatural amino acid L-homoalanine , 2010, Proceedings of the National Academy of Sciences.

[562]  Wolfgang Liebl,et al.  Screening and expression of genes from metagenomes. , 2013, Advances in applied microbiology.

[563]  Xueming Zhao,et al.  Multiplex iterative plasmid engineering for combinatorial optimization of metabolic pathways and diversification of protein coding sequences. , 2013, ACS synthetic biology.

[564]  Roland Wohlgemuth,et al.  The locks and keys to industrial biotechnology. , 2009, New biotechnology.

[565]  Frances H Arnold,et al.  Global incorporation of norleucine in place of methionine in cytochrome P450 BM‐3 heme domain increases peroxygenase activity , 2003, Biotechnology and bioengineering.

[566]  Jürgen Roos,et al.  Development of a Commercial Process for (S)-β-Phenylalanine(1) , 2011 .

[567]  D. B. Johnson,et al.  A New Direction for Biomining: Extraction of Metals by Reductive Dissolution of Oxidized Ores , 2013 .

[568]  Helmar Wiltsche,et al.  (R)‐Selective Nitroaldol Reaction Catalyzed by Metal‐Dependent Bacterial Hydroxynitrile Lyases , 2016 .

[569]  Marc Garcia-Borràs,et al.  Computational tools for the evaluation of laboratory-engineered biocatalysts , 2016, Chemical communications.

[570]  Martina Geier,et al.  Engineering Pichia pastoris for improved NADH regeneration: A novel chassis strain for whole-cell catalysis , 2015, Beilstein journal of organic chemistry.

[571]  Dörte Rother,et al.  (Chemo)enzymatic cascades - Nature's synthetic strategy transferred to the laboratory , 2015 .

[572]  Uwe T. Bornscheuer,et al.  A Fed‐Batch Synthetic Strategy for a Three‐Step Enzymatic Synthesis of Poly‐ϵ‐caprolactone , 2016 .

[573]  J. Bailey,et al.  Toward a science of metabolic engineering , 1991, Science.

[574]  Pedro Fernandes,et al.  Miniaturization in Biocatalysis , 2010, International journal of molecular sciences.

[575]  Xin Wang,et al.  Multiple-site genetic modifications in Escherichia coli using lambda-Red recombination and I-SceI cleavage , 2015, Biotechnology Letters.

[576]  Maxime Durot,et al.  Rapid and reliable DNA assembly via ligase cycling reaction. , 2014, ACS synthetic biology.

[577]  Tuck Seng Wong,et al.  Sequence saturation mutagenesis (SeSaM): a novel method for directed evolution. , 2004, Nucleic acids research.

[578]  Georg M. Guebitz,et al.  Discovery of Polyesterases from Moss-Associated Microorganisms , 2016, Applied and Environmental Microbiology.

[579]  H. Ruijssenaars,et al.  Bioproduction of p-hydroxybenzoate from renewable feedstock by solvent-tolerant Pseudomonas putida S12. , 2007, Journal of biotechnology.

[580]  Korneel Rabaey,et al.  Metabolic and practical considerations on microbial electrosynthesis. , 2011, Current opinion in biotechnology.

[581]  Veera Gnaneswar Gude,et al.  Green chemistry with process intensification for sustainable biodiesel production , 2018, Environmental Chemistry Letters.

[582]  Yasuhisa Asano,et al.  A new enzymatic method of acrylamide production. , 1982 .

[583]  Hafiz M N Iqbal,et al.  Graphene and graphene oxide: Functionalization and nano-bio-catalytic system for enzyme immobilization and biotechnological perspective. , 2018, International journal of biological macromolecules.

[584]  E. Delong,et al.  Environmental diversity of bacteria and archaea. , 2001, Systematic biology.

[585]  Robert M Kelly,et al.  Exploiting microbial hyperthermophilicity to produce an industrial chemical, using hydrogen and carbon dioxide , 2013, Proceedings of the National Academy of Sciences.

[586]  Gyoo Yeol Jung,et al.  Optimization of industrial microorganisms: recent advances in synthetic dynamic regulators , 2016, Journal of Industrial Microbiology & Biotechnology.

[587]  Derek R. Lovley,et al.  Microbial Electrosynthesis: Feeding Microbes Electricity To Convert Carbon Dioxide and Water to Multicarbon Extracellular Organic Compounds , 2010, mBio.

[588]  Erich Leitner,et al.  Whole-cell (+)-ambrein production in the yeast Pichia pastoris , 2018, Metabolic engineering communications.

[589]  Nediljko Budisa,et al.  Coupling Bioorthogonal Chemistries with Artificial Metabolism: Intracellular Biosynthesis of Azidohomoalanine and Its Incorporation into Recombinant Proteins , 2014, Molecules.

[590]  A. Robinson,et al.  Protein folding and secretion: mechanistic insights advancing recombinant protein production in S. cerevisiae. , 2014, Current opinion in biotechnology.

[591]  Jack T Pronk,et al.  Metabolic engineering strategies for optimizing acetate reduction, ethanol yield and osmotolerance in Saccharomyces cerevisiae , 2017, Biotechnology for Biofuels.

[592]  Georg Steinkellner,et al.  Identification of promiscuous ene-reductase activity by mining structural databases using active site constellations , 2014, Nature Communications.

[593]  Yinhua Lu,et al.  New strategies and approaches for engineering biosynthetic gene clusters of microbial natural products. , 2017, Biotechnology advances.

[594]  Karl Gruber,et al.  Comprehensive step-by-step engineering of an (R)-hydroxynitrile lyase for large-scale asymmetric synthesis. , 2003, Angewandte Chemie.

[595]  Wei-dong Yang,et al.  Genetic improvement of the microalga Phaeodactylum tricornutum for boosting neutral lipid accumulation. , 2015, Metabolic engineering.

[596]  Edgard Gnansounou,et al.  Cyanobacteria and microalgae: a positive prospect for biofuels. , 2011, Bioresource technology.

[597]  Kelly P. Nevin,et al.  Electrobiocommodities: powering microbial production of fuels and commodity chemicals from carbon dioxide with electricity. , 2013, Current opinion in biotechnology.

[598]  Zhiyu Zhang,et al.  Microbioreactors for Bioprocess Development , 2007 .

[599]  Paul N. Devine,et al.  Convergent Kilogram-Scale Synthesis of Dual Orexin Receptor Antagonist , 2013 .

[600]  René A Rozendal,et al.  Hydrogen production with a microbial biocathode. , 2008, Environmental science & technology.

[601]  Andreas Wilke,et al.  phylogenetic and functional analysis of metagenomes , 2022 .

[602]  Rainer Breitling,et al.  Synthetic biology advances for pharmaceutical production , 2015, Current opinion in biotechnology.

[603]  Frank Hollmann,et al.  Complete Enzymatic Oxidation of Methanol to Carbon Dioxide: Towards More Eco‐Efficient Regeneration Systems for Reduced Nicotinamide Cofactors , 2015 .

[604]  F. G. Mutti,et al.  Redox self-sufficient biocatalyst network for the amination of primary alcohols. , 2012, Angewandte Chemie.

[605]  Xiandong Meng,et al.  Widespread Polycistronic Transcripts in Fungi Revealed by Single-Molecule mRNA Sequencing , 2015, PloS one.

[606]  Víctor de Lorenzo,et al.  Pseudomonas putida as a functional chassis for industrial biocatalysis: From native biochemistry to trans-metabolism. , 2018, Metabolic engineering.

[607]  Gerhard G. Thallinger,et al.  Enzyme discovery beyond homology: a unique hydroxynitrile lyase in the Bet v1 superfamily , 2017, Scientific Reports.

[608]  M. Mercedes Maroto-Valer,et al.  An overview of current status of carbon dioxide capture and storage technologies , 2014 .

[609]  J. Keasling,et al.  Rapid metabolic pathway assembly and modification using serine integrase site-specific recombination , 2013, Nucleic acids research.

[610]  Andreas Schmid,et al.  Efficient phase separation and product recovery in organic‐aqueous bioprocessing using supercritical carbon dioxide , 2010, Biotechnology and bioengineering.

[611]  Y. Ting,et al.  Metal extraction from municipal solid waste (MSW) incinerator fly ash : Chemical leaching and fungal bioleaching , 2006 .

[612]  Uwe T. Bornscheuer,et al.  Discovery and Protein Engineering of Biocatalysts for Organic Synthesis , 2011 .

[613]  Margarida Casal,et al.  Tailoring cutinase activity towards polyethylene terephthalate and polyamide 6,6 fibers. , 2007, Journal of biotechnology.

[614]  Helmut Schwab,et al.  Versatile and stable vectors for efficient gene expression in Ralstonia eutropha H16. , 2014, Journal of biotechnology.

[615]  Farren J. Isaacs,et al.  Programming cells by multiplex genome engineering and accelerated evolution , 2009, Nature.

[616]  Wolfgang Liebl,et al.  A two-host fosmid system for functional screening of (meta)genomic libraries from extreme thermophiles. , 2009, Systematic and applied microbiology.

[617]  T. Maier,et al.  Semisynthetic production of unnatural L-α-amino acids by metabolic engineering of the cysteine-biosynthetic pathway , 2003, Nature Biotechnology.

[618]  James C Liao,et al.  Engineering a cyanobacterium as the catalyst for the photosynthetic conversion of CO2 to 1,2-propanediol , 2013, Microbial Cell Factories.

[619]  C. Smolke,et al.  Optimization of yeast-based production of medicinal protoberberine alkaloids , 2015, Microbial Cell Factories.

[620]  Xue Chen,et al.  Transcriptome analysis based on next-generation sequencing of non-model plants producing specialized metabolites of biotechnological interest. , 2013, Journal of biotechnology.

[621]  M. Wubbolts,et al.  Metabolic engineering for microbial production of aromatic amino acids and derived compounds. , 2001, Metabolic engineering.

[622]  Dirk Weuster-Botz,et al.  Evaluation of parallel milliliter-scale stirred-tank bioreactors for the study of biphasic whole-cell biocatalysis with ionic liquids. , 2012, Journal of biotechnology.

[623]  André Corrêa Amaral,et al.  Principles, techniques, and applications of biocatalyst immobilization for industrial application , 2015, Applied Microbiology and Biotechnology.

[624]  Gregory Stephanopoulos,et al.  Synthetic biology and metabolic engineering. , 2012, ACS synthetic biology.

[625]  Gabriele Berg,et al.  Replacing conventional decontamination of hatching eggs with a natural defense strategy based on antimicrobial, volatile pyrazines , 2017, Scientific Reports.

[626]  Jürgen Pleiss,et al.  Activation-Independent Cyclization of Monoterpenoids , 2011, Applied and Environmental Microbiology.

[627]  Xiaoyao Tan,et al.  Membrane microreactors for catalytic reactions , 2013 .

[628]  Praneeth Sadda,et al.  Versatile genetic assembly system (VEGAS) to assemble pathways for expression in S. cerevisiae , 2015, Nucleic acids research.

[629]  J. Marienhagen,et al.  Corynebacterium glutamicum as platform for the production of hydroxybenzoic acids , 2018, Microbial Cell Factories.

[630]  Nigel S Scrutton,et al.  Systematic methodology for the development of biocatalytic hydrogen-borrowing cascades: application to the synthesis of chiral α-substituted carboxylic acids from α-substituted α,β-unsaturated aldehydes. , 2015, Organic & biomolecular chemistry.

[631]  Jens Nielsen,et al.  Engineering yeast metabolism for production of terpenoids for use as perfume ingredients, pharmaceuticals and biofuels. , 2017, FEMS yeast research.

[632]  Peng George Wang,et al.  Enzymatic route to preparative-scale synthesis of UDP–GlcNAc/GalNAc, their analogues and GDP–fucose , 2010, Nature Protocols.

[633]  Erich Leitner,et al.  Production of the sesquiterpenoid (+)-nootkatone by metabolic engineering of Pichia pastoris. , 2014, Metabolic engineering.

[634]  Pablo I. Nikel,et al.  Chasing bacterial chassis for metabolic engineering: a perspective review from classical to non‐traditional microorganisms , 2018, Microbial biotechnology.

[635]  Nicholas J. Turner,et al.  One-Pot Cascade Synthesis of Mono- and Disubstituted Piperidines and Pyrrolidines using Carboxylic Acid Reductase (CAR), ω-Transaminase (ω-TA), and Imine Reductase (IRED) Biocatalysts , 2016 .

[636]  J. Retief,et al.  Phylogenetic analysis using PHYLIP. , 2000, Methods in molecular biology.

[637]  S. Panke,et al.  Toward Genome-Based Metabolic Engineering in Bacteria. , 2017, Advances in applied microbiology.

[638]  Huimin Zhao,et al.  Rapid characterization and engineering of natural product biosynthetic pathways via DNA assembler. , 2011, Molecular bioSystems.

[639]  Daniel P. Mulvihill,et al.  Solution structure of a bacterial microcompartment targeting peptide and its application in the construction of an ethanol bioreactor. , 2014, ACS synthetic biology.

[640]  David Sharples,et al.  Microbial expression systems for membrane proteins. , 2018, Methods.

[641]  Geoffrey R Akien,et al.  Online quantitative mass spectrometry for the rapid adaptive optimisation of automated flow reactors , 2016 .

[642]  T. Daußmann,et al.  Oxidoreductases and Hydroxynitrilase Lyases: Complementary Enzymatic Technologies for Chiral Alcohols , 2006 .

[643]  Andreas Schmid,et al.  The dynamic influence of cells on the formation of stable emulsions in organic–aqueous biotransformations , 2015, Journal of Industrial Microbiology & Biotechnology.

[644]  Daniel Mink,et al.  Directed evolution of an industrial biocatalyst: 2-deoxy-D-ribose 5-phosphate aldolase. , 2006, Biotechnology journal.

[645]  Andreas Schmid,et al.  Biofilms as living catalysts in continuous chemical syntheses. , 2012, Trends in biotechnology.

[646]  Jens Nielsen,et al.  Production of natural products through metabolic engineering of Saccharomyces cerevisiae. , 2015, Current opinion in biotechnology.

[647]  Richard Tran,et al.  Changing manufacturing paradigms in downstream processing and the role of alternative bioseparation technologies , 2014 .

[648]  Bernd Nidetzky,et al.  Integrated process design for biocatalytic synthesis by a Leloir Glycosyltransferase: UDP-glucose production with sucrose synthase. , 2017, Biotechnology and bioengineering.

[649]  Burkhard Morgenstern,et al.  AUGUSTUS: ab initio prediction of alternative transcripts , 2006, Nucleic Acids Res..

[650]  Brian C. Jackson,et al.  Aldehyde dehydrogenases in cellular responses to oxidative/electrophilic stress. , 2013, Free radical biology & medicine.

[651]  Clemens Mayer,et al.  A designer enzyme for hydrazone and oxime formation featuring an unnatural catalytic aniline residue , 2018, Nature Chemistry.

[652]  Gintaras Deikus,et al.  Metagenomic binning and association of plasmids with bacterial host genomes using DNA methylation , 2017, Nature Biotechnology.

[653]  Vineet K. Sharma,et al.  Reconstruction of Bacterial and Viral Genomes from Multiple Metagenomes , 2016, Front. Microbiol..

[654]  J. Forment,et al.  GoldenBraid 2.0: A Comprehensive DNA Assembly Framework for Plant Synthetic Biology1[C][W][OA] , 2013, Plant Physiology.

[655]  J Colprim,et al.  Microbial electrosynthesis of butyrate from carbon dioxide. , 2015, Chemical communications.

[656]  G. Bennett,et al.  The effect of NAPRTase overexpression on the total levels of NAD, the NADH/NAD+ ratio, and the distribution of metabolites in Escherichia coli. , 2002, Metabolic engineering.

[657]  Sahng-Ha Lee,et al.  Photobiocatalysis: Activating Redox Enzymes by Direct or Indirect Transfer of Photoinduced Electrons. , 2018, Angewandte Chemie.

[658]  Mikael Rørdam Andersen,et al.  Cell Factory Engineering. , 2017, Cell systems.

[659]  Isabel Rocha,et al.  Yeast metabolic chassis designs for diverse biotechnological products , 2016, Scientific Reports.

[660]  Nediljko Budisa,et al.  Residue-specific global fluorination of Candida antarctica lipase B in Pichia pastoris. , 2010, Molecular bioSystems.

[661]  Roger A Sheldon,et al.  Enzyme immobilisation in biocatalysis: why, what and how. , 2013, Chemical Society reviews.

[662]  Thomas Böttcher,et al.  Natural products and their biological targets: proteomic and metabolomic labeling strategies. , 2010, Angewandte Chemie.

[663]  J. Doyle,et al.  Bow Ties, Metabolism and Disease , 2022 .

[664]  Olaf Kruse,et al.  Birth of a Photosynthetic Chassis: A MoClo Toolkit Enabling Synthetic Biology in the Microalga Chlamydomonas reinhardtii. , 2018, ACS synthetic biology.

[665]  Bernhard Hauer,et al.  Loop‐Grafted Old Yellow Enzymes in the Bienzymatic Cascade Reduction of Allylic Alcohols , 2016, Chembiochem : a European journal of chemical biology.

[666]  Wolfgang Kroutil,et al.  Deracemisation of Mandelic Acid to Optically Pure Non-Natural L-Phenylglycine via a Redox-Neutral Biocatalytic Cascade , 2010 .

[667]  Wolfgang Kroutil,et al.  Enzyme-initiated domino (cascade) reactions , 2001 .

[668]  Nicholas J. Turner,et al.  Biocatalytic transamination with near-stoichiometric inexpensive amine donors mediated by bifunctional mono- and di-amine transaminases , 2017 .

[669]  E. Myers,et al.  Basic local alignment search tool. , 1990, Journal of molecular biology.

[670]  Margit Winkler,et al.  Enzymatic One‐Step Reduction of Carboxylates to Aldehydes with Cell‐Free Regeneration of ATP and NADPH , 2019, Chemistry.

[671]  Partha P Mitra,et al.  Yeast artificial chromosomes employed for random assembly of biosynthetic pathways and production of diverse compounds in Saccharomyces cerevisiae , 2009, Microbial cell factories.

[672]  Ed Jones,et al.  Scaling Up Biocatalysis Reactions in Flow Reactors , 2012 .

[673]  Y. Tao,et al.  Whole-cell biocatalysts by design , 2017, Microbial Cell Factories.

[674]  Klaus Buchholz,et al.  Enzyme Technology: History and Current Trends , 2017 .

[675]  Lorenzo Galluzzi,et al.  Acetyl coenzyme A: a central metabolite and second messenger. , 2015, Cell metabolism.

[676]  Patrik R. Jones,et al.  Bioengineering and Biotechnology Perspective Article Cofactor Engineering for Enhancing the Flux of Metabolic Pathways , 2022 .

[677]  Georg Steinkellner,et al.  Surface engineering of a cutinase from Thermobifida cellulosilytica for improved polyester hydrolysis , 2013, Biotechnology and bioengineering.

[678]  Hyungdon Yun,et al.  Incorporating unnatural amino acids to engineer biocatalysts for industrial bioprocess applications , 2015, Biotechnology journal.

[679]  Timothy S. Ham,et al.  Production of the antimalarial drug precursor artemisinic acid in engineered yeast , 2006, Nature.

[680]  Helen R. Watling,et al.  Review of Biohydrometallurgical Metals Extraction from Polymetallic Mineral Resources , 2014 .

[681]  Zhiguo Su,et al.  Improvement of the Production Efficiency of l-(+)-Tartaric Acid by Heterogeneous Whole-Cell Bioconversion , 2014, Applied Biochemistry and Biotechnology.

[682]  Xiaoyun Su,et al.  Harnessing the knowledge of protein secretion for enhanced protein production in filamentous fungi , 2019, World Journal of Microbiology and Biotechnology.

[683]  Jay D Keasling,et al.  Enhanced lycopene production in Escherichia coli engineered to synthesize isopentenyl diphosphate and dimethylallyl diphosphate from mevalonate , 2006, Biotechnology and bioengineering.

[684]  Ata Akcil,et al.  Biotechnological strategies for the recovery of valuable and critical raw materials from waste electrical and electronic equipment (WEEE) - A review. , 2019, Journal of hazardous materials.

[685]  Gopalakrishnan Kumar,et al.  Promoted electromethanosynthesis in a two-chamber microbial electrolysis cells (MECs) containing a hybrid biocathode covered with graphite felt (GF) , 2016 .

[686]  Jens Nielsen,et al.  Synthetic Biology for Engineering Acetyl Coenzyme A Metabolism in Yeast , 2014, mBio.

[687]  Pablo Carbonell,et al.  XTMS: pathway design in an eXTended metabolic space , 2014, Nucleic Acids Res..

[688]  Martina Micheletti,et al.  Microscale bioprocess optimisation. , 2006, Current opinion in biotechnology.

[689]  D Gani,et al.  Analysis of the aphthovirus 2A/2B polyprotein 'cleavage' mechanism indicates not a proteolytic reaction, but a novel translational effect: a putative ribosomal 'skip'. , 2001, The Journal of general virology.

[690]  G J Lye,et al.  Application of in situ product-removal techniques to biocatalytic processes. , 1999, Trends in biotechnology.

[691]  Matthew D Truppo,et al.  Biocatalysis in the Pharmaceutical Industry: The Need for Speed. , 2017, ACS medicinal chemistry letters.

[692]  B. Cravatt,et al.  Activity-based protein profiling: from enzyme chemistry to proteomic chemistry. , 2008, Annual review of biochemistry.

[693]  Uwe T. Bornscheuer,et al.  Biocatalytic Access to Chiral Polyesters by an Artificial Enzyme Cascade Synthesis , 2015 .

[694]  T. Gulder,et al.  Direct Pathway Cloning Combined with Sequence- and Ligation-Independent Cloning for Fast Biosynthetic Gene Cluster Refactoring and Heterologous Expression. , 2018, ACS synthetic biology.

[695]  Hirofumi Hirai,et al.  Degradation of Polyethylene and Nylon-66 by the Laccase-Mediator System , 2001 .

[696]  Pär Tufvesson,et al.  Process considerations for the scale-up and implementation of biocatalysis , 2010 .

[697]  Falk Harnisch,et al.  Electrobiorefineries: Unlocking the Synergy of Electrochemical and Microbial Conversions. , 2018, Angewandte Chemie.

[698]  Peng George Wang,et al.  Facile Enzymatic Synthesis of Phosphorylated Ketopentoses , 2016 .

[699]  Alessandro Pellis,et al.  Large scale applications of immobilized enzymes call for sustainable and inexpensive solutions: rice husks as renewable alternatives to fossil-based organic resins , 2016 .

[700]  Ernst Weber,et al.  A Modular Cloning System for Standardized Assembly of Multigene Constructs , 2011, PloS one.

[701]  Kristel Bernaerts,et al.  Cloning and Expression of Metagenomic DNA in Streptomyces lividans and Subsequent Fermentation for Optimized Production. , 2017, Methods in molecular biology.

[702]  Wolf-Dieter Fessner,et al.  Recent progress in stereoselective synthesis with aldolases. , 2010, Current opinion in chemical biology.

[703]  R. Kazlauskas,et al.  Increasing the Reaction Rate of Hydroxynitrile Lyase from Hevea brasiliensis toward Mandelonitrile by Copying Active Site Residues from an Esterase that Accepts Aromatic Esters , 2014, Chembiochem : a European journal of chemical biology.

[704]  Gregory Hughes,et al.  Development of an Immobilized Transaminase Capable of Operating in Organic Solvent , 2012 .

[705]  Ulrich Schwaneberg,et al.  An engineered outer membrane pore enables an efficient oxygenation of aromatics and terpenes , 2016 .

[706]  Zhiguang Zhu,et al.  Water Splitting for High‐Yield Hydrogen Production Energized by Biomass Xylooligosaccharides Catalyzed by an Enzyme Cocktail , 2016 .

[707]  Dominic Esposito,et al.  Gateway cloning for protein expression. , 2009, Methods in molecular biology.

[708]  H. Mori,et al.  Metabolomics approach for enzyme discovery. , 2006, Journal of proteome research.

[709]  Carola Engler,et al.  A One Pot, One Step, Precision Cloning Method with High Throughput Capability , 2008, PloS one.

[710]  Guocheng Du,et al.  Advances and prospects of Bacillus subtilis cellular factories: From rational design to industrial applications. , 2018, Metabolic engineering.

[711]  Bernd Nidetzky,et al.  Coated‐wall microreactor for continuous biocatalytic transformations using immobilized enzymes , 2009, Biotechnology journal.

[712]  Derek R Lovley,et al.  Powering microbes with electricity: direct electron transfer from electrodes to microbes. , 2011, Environmental microbiology reports.

[713]  J. Keasling,et al.  The Need for Integrated Approaches in Metabolic Engineering. , 2016, Cold Spring Harbor perspectives in biology.

[714]  Amir Feizi,et al.  Altered sterol composition renders yeast thermotolerant , 2014, Science.

[715]  Ulrich Krühne,et al.  Development of in situ product removal strategies in biocatalysis applying scaled‐down unit operations , 2017, Biotechnology and bioengineering.

[716]  R C Cox,et al.  Incorporation of an unnatural amino acid in the active site of porcine pancreatic phospholipase A2. Substitution of histidine by 1,2,4-triazole-3-alanine yields an enzyme with high activity at acidic pH. , 1996, Protein engineering.

[717]  G. Huisman,et al.  Engineering the third wave of biocatalysis , 2012, Nature.

[718]  B. Seiboth,et al.  Cellulases and beyond: the first 70 years of the enzyme producer Trichoderma reesei , 2016, Microbial Cell Factories.

[719]  Guoqiang Chen,et al.  Engineering bacteria for enhanced polyhydroxyalkanoates (PHA) biosynthesis , 2017, Synthetic and systems biotechnology.

[720]  Bernhard Hauer,et al.  Directed Evolution Empowered Redesign of Natural Proteins for the Sustainable Production of Chemicals and Pharmaceuticals. , 2018, Angewandte Chemie.

[721]  B. Witholt,et al.  Effects of Biosurfactant and Emulsification on Two-Liquid Phase Pseudomonas oleovorans Cultures and Cell-Free Emulsions Containing n-Decane , 1998 .

[722]  Wolfgang Kroutil,et al.  Combined batch and continuous flow procedure to the chemo-enzymatic synthesis of biaryl moiety of Odanacatib , 2014 .

[723]  John M Woodley,et al.  New opportunities for biocatalysis: making pharmaceutical processes greener. , 2008, Trends in biotechnology.

[724]  Lars Holger Schlieper,et al.  Liquid-Liquid Phase Separation in Gravity Settler with Inclined Plates , 2004 .

[725]  Joeri Beauprez,et al.  One step DNA assembly for combinatorial metabolic engineering. , 2014, Metabolic engineering.

[726]  Huimin Zhao,et al.  New tools for reconstruction and heterologous expression of natural product biosynthetic gene clusters. , 2016, Natural product reports.

[727]  Philipp L. Wesche,et al.  DNA Sequence Error Rates in Genbank Records Estimated using the Mouse Genome as a Reference , 2004, DNA sequence : the journal of DNA sequencing and mapping.

[728]  Kurt Faber,et al.  Biotransformations in Organic Chemistry , 1992 .

[729]  Han N. Lim,et al.  Fundamental relationship between operon organization and gene expression , 2011, Proceedings of the National Academy of Sciences.

[730]  Michael H Hecht,et al.  A de novo enzyme catalyzes a life-sustaining reaction in Escherichia coli. , 2018, Nature chemical biology.

[731]  Nicholas J Turner,et al.  Whole-Cell Biocatalysts for Stereoselective C-H Amination Reactions. , 2016, Angewandte Chemie.

[732]  Andreas Karau,et al.  Membrane reactors at Degussa. , 2005, Advances in biochemical engineering/biotechnology.

[733]  Liviu Mihai Dumitru,et al.  Bio‐Electrocatalytic Application of Microorganisms for Carbon Dioxide Reduction to Methane , 2016, ChemSusChem.

[734]  Jonas Baltrusaitis,et al.  Status and perspectives of CO2 conversion into fuels and chemicals by catalytic, photocatalytic and electrocatalytic processes , 2013 .

[735]  Hyungdon Yun,et al.  Unnatural amino acid mutagenesis-based enzyme engineering. , 2015, Trends in biotechnology.

[736]  Jian Wang,et al.  SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler , 2012, GigaScience.

[737]  Yiwei Mo,et al.  Novel strategies of bioleaching metals from printed circuit boards (PCBs) in mixed cultivation of two acidophiles , 2010 .

[738]  Jay D. Keasling,et al.  Production of amorphadiene in yeast, and its conversion to dihydroartemisinic acid, precursor to the antimalarial agent artemisinin , 2012, Proceedings of the National Academy of Sciences.

[739]  D. G. Gibson,et al.  Enzymatic assembly of DNA molecules up to several hundred kilobases , 2009, Nature Methods.

[740]  Mattheos A G Koffas,et al.  Metabolic pathway balancing and its role in the production of biofuels and chemicals. , 2015, Current opinion in biotechnology.

[741]  Peter G Schultz,et al.  A genetically encoded photocaged amino acid. , 2004, Journal of the American Chemical Society.

[742]  Wolfgang Zimmermann,et al.  A disulfide bridge in the calcium binding site of a polyester hydrolase increases its thermal stability and activity against polyethylene terephthalate , 2016, FEBS open bio.

[743]  Andrew Care,et al.  Tools and strategies for constructing cell-free enzyme pathways. , 2019, Biotechnology advances.

[744]  Jens Nielsen,et al.  Impact of synthetic biology and metabolic engineering on industrial production of fine chemicals. , 2015, Biotechnology advances.

[745]  D. J. Mattern,et al.  Synthetic biology tools for bioprospecting of natural products in eukaryotes. , 2014, Chemistry & biology.

[746]  Jay D Keasling,et al.  BglBricks: A flexible standard for biological part assembly , 2010, Journal of biological engineering.

[747]  Jens Nielsen,et al.  Modular Pathway Rewiring of Yeast for Amino Acid Production. , 2018, Methods in enzymology.

[748]  Ángel Berenguer-Murcia,et al.  Importance of the Support Properties for Immobilization or Purification of Enzymes , 2015 .

[749]  J. Pronk,et al.  Engineering cytosolic acetyl-coenzyme A supply in Saccharomyces cerevisiae: Pathway stoichiometry, free-­energy conservation and redox-cofactor balancing , 2016 .

[750]  Andreas Schmid,et al.  Overcoming the Gas–Liquid Mass Transfer of Oxygen by Coupling Photosynthetic Water Oxidation with Biocatalytic Oxyfunctionalization , 2017, Angewandte Chemie.

[751]  Nicholas J Turner,et al.  A Regio- and Stereoselective ω-Transaminase/Monoamine Oxidase Cascade for the Synthesis of Chiral 2,5-Disubstituted Pyrrolidines , 2014, Angewandte Chemie.

[752]  Florian Rudroff,et al.  Double site saturation mutagenesis of the human cytochrome P450 2D6 results in regioselective steroid hydroxylation , 2013, The FEBS journal.

[753]  Jacob Beal,et al.  CIDAR MoClo: Improved MoClo Assembly Standard and New E. coli Part Library Enable Rapid Combinatorial Design for Synthetic and Traditional Biology. , 2016, ACS synthetic biology.

[754]  M. Delepierre,et al.  Aerial Exposure to the Bacterial Volatile Compound Trimethylamine Modifies Antibiotic Resistance of Physically Separated Bacteria by Raising Culture Medium pH , 2014, mBio.

[755]  Bernd Nidetzky,et al.  Multiphase biotransformations in microstructured reactors: opportunities for biocatalytic process intensification and smart flow processing , 2013 .

[756]  Rouhallah Sharifi,et al.  Sniffing bacterial volatile compounds for healthier plants. , 2018, Current opinion in plant biology.

[757]  Haruyuki Atomi,et al.  Microbial enzymes involved in carbon dioxide fixation. , 2002, Journal of bioscience and bioengineering.

[758]  Alessandro Pellis,et al.  The Closure of the Cycle: Enzymatic Synthesis and Functionalization of Bio-Based Polyesters. , 2016, Trends in biotechnology.

[759]  Tanja Woyke,et al.  Function-driven single-cell genomics , 2015, Microbial biotechnology.

[760]  Tom Ellis,et al.  DNA assembly for synthetic biology: from parts to pathways and beyond. , 2011, Integrative biology : quantitative biosciences from nano to macro.

[761]  Natalia N. Ivanova,et al.  Insights into the phylogeny and coding potential of microbial dark matter , 2013, Nature.

[762]  T Gaasterland,et al.  MAGPIE: automated genome interpretation. , 1996, Trends in genetics : TIG.

[763]  Donald Hilvert,et al.  Stereodivergent Evolution of Artificial Enzymes for the Michael Reaction. , 2018, Angewandte Chemie.

[764]  Ulrich Schwaneberg,et al.  To get what we aim for – progress in diversity generation methods , 2013, The FEBS journal.

[765]  Bruce E Logan,et al.  Enhanced start-up of anaerobic facultatively autotrophic biocathodes in bioelectrochemical systems. , 2013, Journal of biotechnology.

[766]  Byoung-In Sang,et al.  Extracellular electron transfer from cathode to microbes: application for biofuel production , 2016, Biotechnology for Biofuels.

[767]  Ana Segura,et al.  Mechanisms of solvent tolerance in gram-negative bacteria. , 2002, Annual review of microbiology.

[768]  G. Stephanopoulos,et al.  Compartmentalization of metabolic pathways in yeast mitochondria improves production of branched chain alcohols , 2013, Nature Biotechnology.

[769]  G L Gilliland,et al.  Enzymes harboring unnatural amino acids: mechanistic and structural analysis of the enhanced catalytic activity of a glutathione transferase containing 5-fluorotryptophan. , 1998, Biochemistry.

[770]  Rohana Abu,et al.  Application of Enzyme Coupling Reactions to Shift Thermodynamically Limited Biocatalytic Reactions , 2015 .

[771]  Junhua Tao,et al.  Development of a Chemoenzymatic Manufacturing Process for Pregabalin , 2008 .

[772]  Rocco Moretti,et al.  Computational enzyme design. , 2013, Angewandte Chemie.

[773]  Mickael Malnoy,et al.  Chemical diversity of microbial volatiles and their potential for plant growth and productivity , 2015, Front. Plant Sci..

[774]  T. Uchiyama,et al.  Functional metagenomics for enzyme discovery: challenges to efficient screening. , 2009, Current opinion in biotechnology.

[775]  C. Carvalho Whole cell biocatalysts: essential workers from Nature to the industry , 2017 .

[776]  Bernd Nidetzky,et al.  Microfluidic Reactor for Continuous Flow Biotransformations with Immobilized Enzymes: the Example of Lactose Hydrolysis by a Hyperthermophilic β_cont;‐Glycoside Hydrolase , 2008 .

[777]  James C Liao,et al.  Metabolic engineering of cyanobacteria for photosynthetic 3-hydroxypropionic acid production from CO2 using Synechococcus elongatus PCC 7942. , 2015, Metabolic engineering.

[778]  K. Helliwell,et al.  Establishing Chlamydomonas reinhardtii as an industrial biotechnology host , 2015, The Plant journal : for cell and molecular biology.

[779]  Yong Jiang,et al.  Bioelectrochemical systems for simultaneously production of methane and acetate from carbon dioxide at relatively high rate , 2013 .

[780]  Rudy Pandjaitan,et al.  In vivo evolution of metabolic pathways by homeologous recombination in mitotic cells. , 2014, Metabolic engineering.

[781]  D. Palmer,et al.  Biotechnological Advances in Bacterial Microcompartment Technology. , 2019, Trends in biotechnology.

[782]  Kerstin Steiner,et al.  Protein Engineering: Recent Trends , 2017 .

[783]  Jay D Keasling,et al.  Optimization of the mevalonate-based isoprenoid biosynthetic pathway in Escherichia coli for production of the anti-malarial drug precursor amorpha-4,11-diene. , 2009, Metabolic engineering.

[784]  Masayuki Inui,et al.  Recent advances in metabolic engineering of Corynebacterium glutamicum for bioproduction of value-added aromatic chemicals and natural products , 2018, Applied Microbiology and Biotechnology.

[785]  Ulrich Schwaneberg,et al.  The Sequence Saturation Mutagenesis (SeSaM) method. , 2014, Methods in molecular biology.

[786]  Yinjie J. Tang,et al.  Metabolic Burden: Cornerstones in Synthetic Biology and Metabolic Engineering Applications. , 2016, Trends in biotechnology.

[787]  Alexander Steinbüchel,et al.  Ralstonia eutropha H16 in progress: Applications beside PHAs and establishment as production platform by advanced genetic tools , 2018, Critical reviews in biotechnology.

[788]  B. Witholt,et al.  Using proteins in their natural environment: potential and limitations of microbial whole-cell hydroxylations in applied biocatalysis. , 2001, Current opinion in biotechnology.

[789]  Kurt Faber,et al.  Enantioselective biocatalytic formal α-amination of hexanoic acid to l-norleucine. , 2018, Organic & biomolecular chemistry.

[790]  Uwe T. Bornscheuer,et al.  Direct biocatalytic one-pot-transformation of cyclohexanol with molecular oxygen into ɛ-caprolactone. , 2013, Enzyme and microbial technology.

[791]  Jaroslav Filip,et al.  Progress in biocatalysis with immobilized viable whole cells: systems development, reaction engineering and applications , 2017, Biotechnology Letters.

[792]  Matthew Bogyo,et al.  A Role for the Protease Falcipain 1 in Host Cell Invasion by the Human Malaria Parasite , 2002, Science.

[793]  Hao Yan,et al.  A Three‐Enzyme Pathway with an Optimised Geometric Arrangement to Facilitate Substrate Transfer , 2016, Chembiochem : a European journal of chemical biology.

[794]  Jin Kim Montclare,et al.  Identification and comparison of cutinases for synthetic polyester degradation , 2011, Applied Microbiology and Biotechnology.

[795]  C. Tomlin,et al.  Expression-level optimization of a multi-enzyme pathway in the absence of a high-throughput assay , 2013, Nucleic acids research.

[796]  Nicholas J. Turner,et al.  Synthesis of 2,5‐Disubstituted Pyrrolidine Alkaloids via A One‐Pot Cascade Using Transaminase and Reductive Aminase Biocatalysts , 2018, ChemCatChem.

[797]  Wolfgang Kroutil,et al.  Biocatalytic synthesis of enantiopure building blocks for pharmaceuticals. , 2013, Drug discovery today. Technologies.

[798]  Antonio Di Pietro,et al.  The Top 10 fungal pathogens in molecular plant pathology. , 2012, Molecular plant pathology.

[799]  A. Csikász-Nagy,et al.  Module-based construction of plasmids for chromosomal integration of the fission yeast Schizosaccharomyces pombe , 2015, Open Biology.

[800]  Aditya M. Kunjapur,et al.  Microbial Engineering for Aldehyde Synthesis , 2015, Applied and Environmental Microbiology.

[801]  Joerg H. Schrittwieser,et al.  Artificial Biocatalytic Linear Cascades for Preparation of Organic Molecules. , 2018, Chemical reviews.

[802]  S. Ho,et al.  Site-directed mutagenesis by overlap extension using the polymerase chain reaction. , 1989, Gene.

[803]  Mark J.H. Simmons,et al.  Biofilms and their engineered counterparts: A new generation of immobilised biocatalysts , 2012 .

[804]  Nicola J. Patron,et al.  A golden gate modular cloning toolbox for plants. , 2014, ACS synthetic biology.

[805]  Thomas R Ward,et al.  Genetic Optimization of Metalloenzymes: Enhancing Enzymes for Non-Natural Reactions. , 2016, Angewandte Chemie.

[806]  T. Sharpton An introduction to the analysis of shotgun metagenomic data , 2014, Front. Plant Sci..

[807]  T. Ellis,et al.  Bricks and blueprints: methods and standards for DNA assembly , 2015, Nature Reviews Molecular Cell Biology.

[808]  Nicholas J Turner,et al.  InspIRED by Nature: NADPH-Dependent Imine Reductases (IREDs) as Catalysts for the Preparation of Chiral Amines. , 2016, Chemistry.

[809]  Wolfgang Kroutil,et al.  Biocatalytic Imine Reduction and Reductive Amination of Ketones , 2015 .

[810]  Yu-Guo Zheng,et al.  Biocatalytic hydrolysis of chlorinated nicotinamides by a superior AS family amidase and its application in enzymatic production of 2-chloronicotinic acid. , 2018, Bioorganic chemistry.

[811]  Jens Nielsen,et al.  Engineering Robustness of Microbial Cell Factories , 2017, Biotechnology journal.

[812]  A. Granell,et al.  GoldenBraid: An Iterative Cloning System for Standardized Assembly of Reusable Genetic Modules , 2011, PloS one.

[813]  R Staden,et al.  The staden sequence analysis package , 1996, Molecular biotechnology.

[814]  Alessandro Pellis,et al.  Evolving biocatalysis to meet bioeconomy challenges and opportunities. , 2018, New biotechnology.

[815]  R. Léon,et al.  Overexpression of an exogenous phytoene synthase gene in the unicellular alga Chlamydomonas reinhardtii leads to an increase in the content of carotenoids , 2011, Biotechnology progress.

[816]  Carlos G. Acevedo-Rocha,et al.  Lipase Congeners Designed by Genetic Code Engineering , 2011 .

[817]  C. Syldatk,et al.  Hydantoinases and related enzymes as biocatalysts for the synthesis of unnatural chiral amino acids. , 2001, Current opinion in biotechnology.

[818]  Huimin Zhao,et al.  Combinatorial Design of a Highly Efficient Xylose-Utilizing Pathway in Saccharomyces cerevisiae for the Production of Cellulosic Biofuels , 2012, Applied and Environmental Microbiology.

[819]  Jan Brezovsky,et al.  Computational tools for designing and engineering enzymes. , 2014, Current opinion in chemical biology.

[820]  Gabriela Alves Macedo,et al.  Cutinases: properties and industrial applications. , 2009, Advances in applied microbiology.

[821]  Kevin Clancy,et al.  DNA Assembly Tools and Strategies for the Generation of Plasmids. , 2014, Microbiology spectrum.

[822]  A. Braun,et al.  Production of human cytochrome P450 2D6 drug metabolites with recombinant microbes--a comparative study. , 2012, Biotechnology journal.

[823]  Manfred T. Reetz,et al.  Directed Evolution of Artificial Metalloenzymes , 2015 .

[824]  S. Hirota,et al.  Artificial enzymes with protein scaffolds: structural design and modification. , 2014, Bioorganic & medicinal chemistry.

[825]  Georg M. Guebitz,et al.  Surface engineering of polyester-degrading enzymes to improve efficiency and tune specificity , 2018, Applied Microbiology and Biotechnology.

[826]  Alessandro Pellis,et al.  Ultrasound-enhanced enzymatic hydrolysis of poly(ethylene terephthalate). , 2016, Bioresource technology.

[827]  Guangyin Zhen,et al.  Understanding methane bioelectrosynthesis from carbon dioxide in a two-chamber microbial electrolysis cells (MECs) containing a carbon biocathode. , 2015, Bioresource technology.

[828]  Kerstin Steiner,et al.  Recent advances in rational approaches for enzyme engineering , 2012, Computational and structural biotechnology journal.

[829]  Korneel Rabaey,et al.  Conversion of Wastes into Bioelectricity and Chemicals by Using Microbial Electrochemical Technologies , 2012, Science.

[830]  Andreas Schmid,et al.  Continuous multistep synthesis of perillic acid from limonene by catalytic biofilms under segmented flow , 2017, Biotechnology and bioengineering.

[831]  J. Keasling,et al.  Engineering Cellular Metabolism , 2016, Cell.

[832]  Alexander Siegl,et al.  PKS and NRPS gene clusters from microbial symbiont cells of marine sponges by whole genome amplification. , 2009, Environmental microbiology reports.

[833]  Sabine Willscher,et al.  Biomining: metal recovery from ores with microorganisms. , 2014, Advances in biochemical engineering/biotechnology.

[834]  Wim Soetaert,et al.  Biotechnological advances in UDP-sugar based glycosylation of small molecules. , 2015, Biotechnology advances.

[835]  Gregory Stephanopoulos,et al.  Combinatorial Engineering of 1-Deoxy-D-Xylulose 5-Phosphate Pathway Using Cross-Lapping In Vitro Assembly (CLIVA) Method , 2013, PloS one.

[836]  K. Oldenburg,et al.  Recombination-mediated PCR-directed plasmid construction in vivo in yeast. , 1997, Nucleic acids research.

[837]  H. Noorman,et al.  Key Green Engineering Research Areas for Sustainable Manufacturing: A Perspective from Pharmaceutical and Fine Chemicals Manufacturers , 2011 .

[838]  Wolfgang Zimmermann,et al.  Ca2+ and Mg2+ binding site engineering increases the degradation of polyethylene terephthalate films by polyester hydrolases from Thermobifida fusca. , 2015, Biotechnology journal.

[839]  Kai Blin,et al.  antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences , 2011, Nucleic Acids Res..

[840]  Rob Knight,et al.  Using QIIME to Analyze 16S rRNA Gene Sequences from Microbial Communities , 2011, Current protocols in bioinformatics.

[841]  Kazuya Yamanaka,et al.  Epsilon-poly-L-lysine dispersity is controlled by a highly unusual nonribosomal peptide synthetase. , 2008, Nature chemical biology.

[842]  Seon-Won Kim,et al.  Microbial Platform for Terpenoid Production: Escherichia coli and Yeast , 2018, Front. Microbiol..

[843]  Ipsita Roy,et al.  Converting Enzymes into Tools of Industrial Importance. , 2017, Recent patents on biotechnology.

[844]  Ying-Jin Yuan,et al.  Engineering Saccharomyces cerevisiae for geranylgeraniol overproduction by combinatorial design , 2017, Scientific Reports.

[845]  I. Horne,et al.  ENZYMATIC BIOREMEDIATION: FROM ENZYME DISCOVERY TO APPLICATIONS , 2004, Clinical and experimental pharmacology & physiology.

[846]  P. Nikel,et al.  A New Player in the Biorefineries Field: Phasin PhaP Enhances Tolerance to Solvents and Boosts Ethanol and 1,3-Propanediol Synthesis in Escherichia coli , 2017, Applied and Environmental Microbiology.

[847]  Christine A. Orengo,et al.  Metagenome Mining: A Sequence Directed Strategy for the Retrieval of Enzymes for Biocatalysis , 2016 .

[848]  J. Woodley,et al.  Guidelines for development and implementation of biocatalytic P450 processes , 2015, Applied Microbiology and Biotechnology.

[849]  J. Zucko,et al.  ClustScan: an integrated program package for the semi-automatic annotation of modular biosynthetic gene clusters and in silico prediction of novel chemical structures , 2008, Nucleic acids research.

[850]  Andy Reisinger,et al.  How much do direct livestock emissions actually contribute to global warming? , 2018, Global change biology.

[851]  Weihong Jiang,et al.  High-Efficiency Scarless Genetic Modification in Escherichia coli by Using Lambda Red Recombination and I-SceI Cleavage , 2014, Applied and Environmental Microbiology.

[852]  Nathan J Hillson,et al.  Development of a broad-host synthetic biology toolbox for ralstonia eutropha and its application to engineering hydrocarbon biofuel production , 2013, Microbial Cell Factories.

[853]  Bin Chen,et al.  A Substrate Fed-Batch Biphasic Catalysis Process for the Production of Natural Crosslinking Agent Genipin with Fusarium solani ACCC 36223. , 2015, Journal of microbiology and biotechnology.

[854]  Wolfgang Kroutil,et al.  Artificial Biocatalytic Linear Cascades to Access Hydroxy Acids, Lactones, and α- and β-Amino Acids , 2018 .

[855]  Martina Letizia Contente,et al.  Continuous flow biocatalysis: production and in-line purification of amines by immobilised transaminase from Halomonas elongata , 2017 .

[856]  Ángel Berenguer-Murcia,et al.  Strategies for the one-step immobilization-purification of enzymes as industrial biocatalysts. , 2015, Biotechnology advances.

[857]  Roland Wohlgemuth,et al.  Biocatalysis--key to sustainable industrial chemistry. , 2010, Current opinion in biotechnology.

[858]  Zhen Kang,et al.  Directed evolution combined with synthetic biology strategies expedite semi-rational engineering of genes and genomes , 2015, Bioengineered.

[859]  Mauro Majone,et al.  Electrochemically assisted methane production in a biofilm reactor , 2011 .

[860]  Helmut Schwab,et al.  Improvement of a stereoselective biocatalytic synthesis by substrate and enzyme engineering: 2-hydroxy-(4'-oxocyclohexyl)acetonitrile as the model. , 2008, Chemistry.

[861]  P. Adams,et al.  Analytics for Metabolic Engineering , 2015, Front. Bioeng. Biotechnol..

[862]  Gibson S. Nyanhongo,et al.  ADVANCES IN THE APPLICATION OF OXIDATIVE ENZYMES IN BIOPOLYMER CHEMISTRY AND BIOMATERIAL RESEARCH , 2012 .