MiRFinder: an improved approach and software implementation for genome-wide fast microRNA precursor scans
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Bin Fan | Kui Li | Zhi-Liang Hu | Max F. Rothschild | Ting-Hua Huang | Shu-Hong Zhao | M. Rothschild | Zhi-Liang Hu | B. Fan | Kui Li | Shumiao Zhao | Ting Huang
[1] P. Rouzé,et al. Detection of 91 potential conserved plant microRNAs in Arabidopsis thaliana and Oryza sativa identifies important target genes. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[2] Santosh K. Mishra,et al. De novo SVM classification of precursor microRNAs from genomic pseudo hairpins using global and intrinsic folding measures , 2007, Bioinform..
[3] Ola R. Snøve,et al. Reliable prediction of Drosha processing sites improves microRNA gene prediction. , 2007, Bioinformatics.
[4] Edouard Bertrand,et al. Exportin-5 Mediates Nuclear Export of Minihelix-containing RNAs* , 2003, The Journal of Biological Chemistry.
[5] Ron Shamir,et al. Accurate identification of alternatively spliced exons using support vector machine , 2005, Bioinform..
[6] B. Bass,et al. A Role for the RNase III Enzyme DCR-1 in RNA Interference and Germ Line Development in Caenorhabditis elegans , 2001, Science.
[7] William Stafford Noble,et al. Assessing computational tools for the discovery of transcription factor binding sites , 2005, Nature Biotechnology.
[8] Fei Li,et al. Classification of real and pseudo microRNA precursors using local structure-sequence features and support vector machine , 2005, BMC Bioinformatics.
[9] Sanghyuk Lee,et al. MicroRNA genes are transcribed by RNA polymerase II , 2004, The EMBO journal.
[10] Stijn van Dongen,et al. miRBase: microRNA sequences, targets and gene nomenclature , 2005, Nucleic Acids Res..
[11] M S Waterman,et al. Identification of common molecular subsequences. , 1981, Journal of molecular biology.
[12] J. Sabina,et al. Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. , 1999, Journal of molecular biology.
[13] Terrence S. Furey,et al. The UCSC Genome Browser Database: update 2006 , 2005, Nucleic Acids Res..
[14] K. Czaplinski,et al. Exportin 5 is a RanGTP-dependent dsRNA-binding protein that mediates nuclear export of pre-miRNAs. , 2004, RNA.
[15] B. Cullen,et al. Exportin-5 mediates the nuclear export of pre-microRNAs and short hairpin RNAs. , 2003, Genes & development.
[16] C. Burge,et al. The microRNAs of Caenorhabditis elegans. , 2003, Genes & development.
[17] U. Kutay,et al. Nuclear Export of MicroRNA Precursors , 2004, Science.
[18] Jin-Wu Nam,et al. Genomics of microRNA. , 2006, Trends in genetics : TIG.
[19] L. Lim,et al. An Abundant Class of Tiny RNAs with Probable Regulatory Roles in Caenorhabditis elegans , 2001, Science.
[20] A. Pasquinelli,et al. A Cellular Function for the RNA-Interference Enzyme Dicer in the Maturation of the let-7 Small Temporal RNA , 2001, Science.
[21] Fei Li,et al. MicroRNA identification based on sequence and structure alignment , 2005, Bioinform..
[22] Mihaela Zavolan,et al. Identification of Clustered Micrornas Using an Ab Initio Prediction Method , 2022 .
[23] B. Patterson,et al. Letter to the editor. , 2018, Journal of professional nursing : official journal of the American Association of Colleges of Nursing.
[24] C. Sander,et al. Identification of microRNAs of the herpesvirus family , 2005, Nature Methods.
[25] V. Ambros,et al. An Extensive Class of Small RNAs in Caenorhabditis elegans , 2001, Science.
[26] T. Tuschl,et al. Identification of Novel Genes Coding for Small Expressed RNAs , 2001, Science.
[27] D. Bartel,et al. Computational identification of plant microRNAs and their targets, including a stress-induced miRNA. , 2004, Molecular cell.
[28] G. Hannon,et al. C . elegans involved in developmental timing in Dicer functions in RNA interference and in synthesis of small RNA , 2001 .
[29] Ting Wang,et al. The UCSC Genome Browser Database: update 2009 , 2008, Nucleic Acids Res..
[30] V. Kim,et al. The nuclear RNase III Drosha initiates microRNA processing , 2003, Nature.
[31] B. Cullen,et al. Human microRNAs are processed from capped, polyadenylated transcripts that can also function as mRNAs. , 2004, RNA.
[32] G. Rubin,et al. Computational identification of Drosophila microRNA genes , 2003, Genome Biology.
[33] Byoung-Tak Zhang,et al. Human microRNA prediction through a probabilistic co-learning model of sequence and structure , 2005, Nucleic acids research.
[34] F. Slack,et al. Control of developmental timing by small temporal RNAs: a paradigm for RNA‐mediated regulation of gene expression , 2002, BioEssays : news and reviews in molecular, cellular and developmental biology.
[35] Peter F. Stadler,et al. Hairpins in a Haystack: recognizing microRNA precursors in comparative genomics data , 2006, ISMB.