Comparative transcriptomics of primary cells in vertebrates
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Martin S. Taylor | Jordan A. Ramilowski | Robert S. Young | Piero Carninci | Y. Hayashizaki | T. Lassmann | A. Forrest | T. Kasukawa | L. Marchionni | M. Itoh | H. Kawaji | J. Severin | R. Andersson | E. Arner | Y. Ishizu | M. Lizio | I. Abugessaisa | Shohei Noma | T. Alam | A. Hasegawa | L. Khachigian | H. Tarui | Guojun Sheng | Michiel J. L. de Hoon | Saumya Agrawal
[1] Feng Yang,et al. miR-22 Is a Novel Mediator of Vascular Smooth Muscle Cell Phenotypic Modulation and Neointima Formation , 2017, Circulation.
[2] Piero Carninci,et al. Monitoring transcription initiation activities in rat and dog , 2017, Scientific Data.
[3] Astrid Gall,et al. Ensembl 2018 , 2017, Nucleic Acids Res..
[4] Evan Bolton,et al. Database resources of the National Center for Biotechnology Information , 2017, Nucleic Acids Res..
[5] Piero Carninci,et al. Systematic analysis of transcription start sites in avian development , 2017, PLoS biology.
[6] P. Argani,et al. MicroRNA expression profiling of Xp11 renal cell carcinoma. , 2017, Human pathology.
[7] Piero Carninci,et al. FANTOM5 CAGE profiles of human and mouse reprocessed for GRCh38 and GRCm38 genome assemblies , 2017, Scientific Data.
[8] Jay W. Shin,et al. An integrated expression atlas of miRNAs and their promoters in human and mouse , 2017, Nature Biotechnology.
[9] Fabian J Theis,et al. The Human Cell Atlas , 2017, bioRxiv.
[10] R. Guigó,et al. Comparative transcriptomics in human and mouse , 2017, Nature Reviews Genetics.
[11] G. Wagner,et al. The origin and evolution of cell types , 2016, Nature Reviews Genetics.
[12] Gregory J. Goodall,et al. A network-biology perspective of microRNA function and dysfunction in cancer , 2016, Nature Reviews Genetics.
[13] Vincent J. Lynch,et al. The Transcriptomic Evolution of Mammalian Pregnancy: Gene Expression Innovations in Endometrial Stromal Fibroblasts , 2016, Genome biology and evolution.
[14] Robert S. Young,et al. Enhancer Turnover Is Associated with a Divergent Transcriptional Response to Glucocorticoid in Mouse and Human Macrophages , 2016, The Journal of Immunology.
[15] G. Wagner,et al. Character trees from transcriptome data: Origin and individuation of morphological characters and the so-called "species signal". , 2015, Journal of experimental zoology. Part B, Molecular and developmental evolution.
[16] Martin S. Taylor,et al. The frequent evolutionary birth and death of functional promoters in mouse and human , 2015, Genome research.
[17] Piero Carninci,et al. A draft network of ligand–receptor-mediated multicellular signalling in human , 2015, Nature Communications.
[18] Thomas J. Ha,et al. Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells , 2015, Science.
[19] Thomas R. Gingeras,et al. Comparison of the transcriptional landscapes between human and mouse tissues , 2014, Proceedings of the National Academy of Sciences.
[20] Z. Weng,et al. Principles of regulatory information conservation between mouse and human , 2014, Nature.
[21] W. Huber,et al. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 , 2014, Genome Biology.
[22] Prudence Mutowo-Meullenet,et al. The GOA database: Gene Ontology annotation updates for 2015 , 2014, Nucleic Acids Res..
[23] Shane J. Neph,et al. A comparative encyclopedia of DNA elements in the mouse genome , 2014, Nature.
[24] Tatiana A. Tatusova,et al. Gene: a gene-centered information resource at NCBI , 2014, Nucleic Acids Res..
[25] T. Meehan,et al. An atlas of active enhancers across human cell types and tissues , 2014, Nature.
[26] Cesare Furlanello,et al. A promoter-level mammalian expression atlas , 2015 .
[27] H. Lodish,et al. Transcriptional divergence and conservation of human and mouse erythropoiesis , 2014, Proceedings of the National Academy of Sciences.
[28] Ana Kozomara,et al. miRBase: annotating high confidence microRNAs using deep sequencing data , 2013, Nucleic Acids Res..
[29] Henk M. W. Verheul,et al. Analysis of the genomic response of human prostate cancer cells to histone deacetylase inhibitors , 2013, Epigenetics.
[30] C. Burge,et al. Evolutionary Dynamics of Gene and Isoform Regulation in Mammalian Tissues , 2012, Science.
[31] Mikhail Pachkov,et al. SwissRegulon, a database of genome-wide annotations of regulatory sites: recent updates , 2012, Nucleic Acids Res..
[32] David Haussler,et al. The UCSC genome browser and associated tools , 2012, Briefings Bioinform..
[33] Raymond K. Auerbach,et al. An Integrated Encyclopedia of DNA Elements in the Human Genome , 2012, Nature.
[34] N. Goldman,et al. Conservation and divergence in Toll-like receptor 4-regulated gene expression in primary human versus mouse macrophages , 2012, Proceedings of the National Academy of Sciences.
[35] Mikhail Pachkov,et al. MotEvo: integrated Bayesian probabilistic methods for inferring regulatory sites and motifs on multiple alignments of DNA sequences , 2012, Bioinform..
[36] Giovanni Parmigiani,et al. Integrating diverse genomic data using gene sets , 2011, Genome Biology.
[37] S. Bergmann,et al. The evolution of gene expression levels in mammalian organs , 2011, Nature.
[38] L. Marchionni,et al. Molecular effects of genistein on male urethral development. , 2011, The Journal of urology.
[39] Martin S. Taylor,et al. The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line , 2009, Nature Genetics.
[40] Esther T. Chan,et al. Conservation of core gene expression in vertebrate tissues , 2009, Journal of biology.
[41] Ting Wang,et al. The UCSC Genome Browser Database: update 2009 , 2008, Nucleic Acids Res..
[42] D. Arendt. The evolution of cell types in animals: emerging principles from molecular studies , 2008, Nature Reviews Genetics.
[43] S. Carroll. Evo-Devo and an Expanding Evolutionary Synthesis: A Genetic Theory of Morphological Evolution , 2008, Cell.
[44] D. Gifford,et al. Tissue-specific transcriptional regulation has diverged significantly between human and mouse , 2007, Nature Genetics.
[45] B. Hall,et al. Human cell type diversity, evolution, development, and classification with special reference to cells derived from the neural crest , 2006, Biological reviews of the Cambridge Philosophical Society.
[46] Terrence S. Furey,et al. The UCSC Genome Browser Database: update 2006 , 2005, Nucleic Acids Res..
[47] Giovanni Parmigiani,et al. MergeMaid: R Tools for Merging and Cross-Study Validation of Gene Expression Data , 2004, Statistical applications in genetics and molecular biology.
[48] Giovanni Parmigiani,et al. A Cross-Study Comparison of Gene Expression Studies for the Molecular Classification of Lung Cancer , 2004, Clinical Cancer Research.
[49] D. Haussler,et al. Aligning multiple genomic sequences with the threaded blockset aligner. , 2004, Genome research.
[50] A. Orth,et al. Large-scale analysis of the human and mouse transcriptomes , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[51] M. King,et al. Evolution at two levels in humans and chimpanzees. , 1975, Science.
[52] R. Britten,et al. Repetitive and Non-Repetitive DNA Sequences and a Speculation on the Origins of Evolutionary Novelty , 1971, The Quarterly Review of Biology.
[53] Albert J. Vilella,et al. EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates. , 2009, Genome research.